Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01069

Experiment: Outgrowth from agar plate co-culture with Enterobacter sp. TBS_079

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01067 and MPMX20_01068 are separated by 1 nucleotidesMPMX20_01068 and MPMX20_01069 are separated by 12 nucleotidesMPMX20_01069 and MPMX20_01070 are separated by 50 nucleotidesMPMX20_01070 and MPMX20_01071 are separated by 151 nucleotides MPMX20_01067: MPMX20_01067 - Mechanosensitive channel MscK, at 1,123,529 to 1,126,876 _01067 MPMX20_01068: MPMX20_01068 - hypothetical protein, at 1,126,878 to 1,127,063 _01068 MPMX20_01069: MPMX20_01069 - Primosomal replication protein N'', at 1,127,076 to 1,127,603 _01069 MPMX20_01070: MPMX20_01070 - Inner membrane protein YbaN, at 1,127,654 to 1,128,031 _01070 MPMX20_01071: MPMX20_01071 - Adenine phosphoribosyltransferase, at 1,128,183 to 1,128,734 _01071 Position (kb) 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1at 1126.079 kb on + strand, within MPMX20_01067at 1126.087 kb on - strand, within MPMX20_01067at 1126.087 kb on - strand, within MPMX20_01067at 1126.107 kb on + strand, within MPMX20_01067at 1126.115 kb on - strand, within MPMX20_01067at 1126.116 kb on + strand, within MPMX20_01067at 1126.124 kb on - strand, within MPMX20_01067at 1126.150 kb on + strand, within MPMX20_01067at 1126.205 kb on - strand, within MPMX20_01067at 1126.515 kb on + strand, within MPMX20_01067at 1126.541 kb on + strand, within MPMX20_01067at 1126.547 kb on + strandat 1126.559 kb on + strandat 1126.618 kb on + strandat 1126.629 kb on + strandat 1126.629 kb on + strandat 1126.634 kb on + strandat 1126.637 kb on - strandat 1126.637 kb on - strandat 1126.651 kb on - strandat 1126.658 kb on - strandat 1126.700 kb on - strandat 1126.711 kb on + strandat 1126.713 kb on + strandat 1126.719 kb on - strandat 1126.727 kb on + strandat 1126.787 kb on - strandat 1126.789 kb on + strandat 1126.909 kb on + strand, within MPMX20_01068at 1126.909 kb on + strand, within MPMX20_01068at 1126.917 kb on - strand, within MPMX20_01068at 1126.932 kb on - strand, within MPMX20_01068at 1126.932 kb on - strand, within MPMX20_01068at 1127.007 kb on - strand, within MPMX20_01068at 1127.029 kb on + strand, within MPMX20_01068at 1127.082 kb on + strandat 1127.082 kb on + strandat 1127.082 kb on + strandat 1127.142 kb on + strand, within MPMX20_01069at 1127.142 kb on + strand, within MPMX20_01069at 1127.150 kb on - strand, within MPMX20_01069at 1127.150 kb on - strand, within MPMX20_01069at 1127.351 kb on - strand, within MPMX20_01069at 1127.358 kb on - strand, within MPMX20_01069at 1127.380 kb on + strand, within MPMX20_01069at 1127.437 kb on - strand, within MPMX20_01069at 1127.555 kb on + strandat 1127.696 kb on + strand, within MPMX20_01070at 1127.696 kb on + strand, within MPMX20_01070at 1127.717 kb on + strand, within MPMX20_01070at 1127.759 kb on + strand, within MPMX20_01070at 1127.760 kb on - strand, within MPMX20_01070at 1127.794 kb on + strand, within MPMX20_01070at 1127.868 kb on + strand, within MPMX20_01070at 1127.876 kb on - strand, within MPMX20_01070at 1127.876 kb on - strand, within MPMX20_01070at 1127.971 kb on - strand, within MPMX20_01070at 1128.035 kb on - strandat 1128.093 kb on + strandat 1128.093 kb on + strandat 1128.104 kb on + strandat 1128.150 kb on + strandat 1128.152 kb on + strandat 1128.160 kb on - strandat 1128.160 kb on - strandat 1128.185 kb on + strandat 1128.203 kb on + strandat 1128.234 kb on + strandat 1128.234 kb on + strandat 1128.239 kb on + strand, within MPMX20_01071at 1128.242 kb on - strand, within MPMX20_01071at 1128.244 kb on + strand, within MPMX20_01071at 1128.250 kb on + strand, within MPMX20_01071at 1128.280 kb on - strand, within MPMX20_01071at 1128.313 kb on + strand, within MPMX20_01071at 1128.313 kb on + strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.321 kb on - strand, within MPMX20_01071at 1128.367 kb on + strand, within MPMX20_01071at 1128.368 kb on - strand, within MPMX20_01071at 1128.410 kb on + strand, within MPMX20_01071at 1128.476 kb on + strand, within MPMX20_01071at 1128.535 kb on - strand, within MPMX20_01071

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Enterobacter sp. TBS_079
remove
1,126,079 + MPMX20_01067 0.76 -1.1
1,126,087 - MPMX20_01067 0.76 -0.3
1,126,087 - MPMX20_01067 0.76 -1.3
1,126,107 + MPMX20_01067 0.77 +0.8
1,126,115 - MPMX20_01067 0.77 -0.6
1,126,116 + MPMX20_01067 0.77 -1.1
1,126,124 - MPMX20_01067 0.78 -1.0
1,126,150 + MPMX20_01067 0.78 -2.1
1,126,205 - MPMX20_01067 0.80 -0.9
1,126,515 + MPMX20_01067 0.89 +1.0
1,126,541 + MPMX20_01067 0.90 -0.9
1,126,547 + -0.3
1,126,559 + -0.1
1,126,618 + -1.1
1,126,629 + -0.9
1,126,629 + +1.2
1,126,634 + -0.5
1,126,637 - -0.5
1,126,637 - -1.0
1,126,651 - -1.5
1,126,658 - +0.5
1,126,700 - -0.7
1,126,711 + -2.6
1,126,713 + -0.7
1,126,719 - -0.3
1,126,727 + -0.2
1,126,787 - -0.2
1,126,789 + -1.0
1,126,909 + MPMX20_01068 0.17 -0.8
1,126,909 + MPMX20_01068 0.17 -1.0
1,126,917 - MPMX20_01068 0.21 -2.0
1,126,932 - MPMX20_01068 0.29 -0.5
1,126,932 - MPMX20_01068 0.29 +0.2
1,127,007 - MPMX20_01068 0.69 -1.0
1,127,029 + MPMX20_01068 0.81 -1.7
1,127,082 + -0.7
1,127,082 + +0.7
1,127,082 + -2.2
1,127,142 + MPMX20_01069 0.12 -0.4
1,127,142 + MPMX20_01069 0.12 -0.6
1,127,150 - MPMX20_01069 0.14 +0.4
1,127,150 - MPMX20_01069 0.14 +0.2
1,127,351 - MPMX20_01069 0.52 +0.1
1,127,358 - MPMX20_01069 0.53 +0.2
1,127,380 + MPMX20_01069 0.58 -0.7
1,127,437 - MPMX20_01069 0.68 +0.3
1,127,555 + -0.7
1,127,696 + MPMX20_01070 0.11 -1.8
1,127,696 + MPMX20_01070 0.11 +0.0
1,127,717 + MPMX20_01070 0.17 +0.4
1,127,759 + MPMX20_01070 0.28 +0.0
1,127,760 - MPMX20_01070 0.28 +1.2
1,127,794 + MPMX20_01070 0.37 +0.2
1,127,868 + MPMX20_01070 0.57 +1.3
1,127,876 - MPMX20_01070 0.59 -0.1
1,127,876 - MPMX20_01070 0.59 +0.1
1,127,971 - MPMX20_01070 0.84 -0.2
1,128,035 - -1.0
1,128,093 + +0.1
1,128,093 + +0.3
1,128,104 + -1.8
1,128,150 + -0.3
1,128,152 + -0.9
1,128,160 - -2.8
1,128,160 - -1.5
1,128,185 + +0.3
1,128,203 + +0.1
1,128,234 + +0.6
1,128,234 + +0.6
1,128,239 + MPMX20_01071 0.10 -1.8
1,128,242 - MPMX20_01071 0.11 -0.5
1,128,244 + MPMX20_01071 0.11 -0.7
1,128,250 + MPMX20_01071 0.12 -0.0
1,128,280 - MPMX20_01071 0.18 -0.8
1,128,313 + MPMX20_01071 0.24 +0.2
1,128,313 + MPMX20_01071 0.24 -0.7
1,128,321 - MPMX20_01071 0.25 +0.4
1,128,321 - MPMX20_01071 0.25 -0.8
1,128,321 - MPMX20_01071 0.25 -0.3
1,128,367 + MPMX20_01071 0.33 -1.0
1,128,368 - MPMX20_01071 0.34 -1.4
1,128,410 + MPMX20_01071 0.41 -1.0
1,128,476 + MPMX20_01071 0.53 -1.0
1,128,535 - MPMX20_01071 0.64 -1.1

Or see this region's nucleotide sequence