Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18715 and LRK55_RS18720 overlap by 4 nucleotides LRK55_RS18720 and LRK55_RS18725 are separated by 31 nucleotides LRK55_RS18725 and LRK55_RS18730 are separated by 94 nucleotides LRK55_RS18730 and LRK55_RS18735 overlap by 4 nucleotides
LRK55_RS18715: LRK55_RS18715 - cation transporter, at 82,027 to 82,650
_RS18715
LRK55_RS18720: LRK55_RS18720 - phosphatase PAP2 family protein, at 82,647 to 83,234
_RS18720
LRK55_RS18725: LRK55_RS18725 - cation diffusion facilitator family transporter, at 83,266 to 84,228
_RS18725
LRK55_RS18730: LRK55_RS18730 - P-II family nitrogen regulator, at 84,323 to 84,646
_RS18730
LRK55_RS18735: LRK55_RS18735 - CusA/CzcA family heavy metal efflux RND transporter, at 84,643 to 87,777
_RS18735
Position (kb) 83
84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 82.311 kb on - strand, within LRK55_RS18715 at 82.311 kb on - strand, within LRK55_RS18715 at 82.363 kb on - strand, within LRK55_RS18715 at 82.363 kb on - strand, within LRK55_RS18715 at 82.401 kb on - strand, within LRK55_RS18715 at 82.401 kb on - strand, within LRK55_RS18715 at 82.520 kb on + strand, within LRK55_RS18715 at 82.520 kb on + strand, within LRK55_RS18715 at 82.521 kb on - strand, within LRK55_RS18715 at 82.567 kb on + strand, within LRK55_RS18715 at 82.567 kb on + strand, within LRK55_RS18715 at 82.567 kb on + strand, within LRK55_RS18715 at 82.567 kb on + strand, within LRK55_RS18715 at 82.567 kb on + strand, within LRK55_RS18715 at 82.568 kb on - strand, within LRK55_RS18715 at 82.568 kb on - strand, within LRK55_RS18715 at 82.568 kb on - strand, within LRK55_RS18715 at 82.568 kb on - strand, within LRK55_RS18715 at 82.841 kb on + strand, within LRK55_RS18720 at 82.954 kb on + strand, within LRK55_RS18720 at 82.954 kb on + strand, within LRK55_RS18720 at 82.955 kb on - strand, within LRK55_RS18720 at 82.955 kb on - strand, within LRK55_RS18720 at 83.040 kb on - strand, within LRK55_RS18720 at 83.040 kb on - strand, within LRK55_RS18720 at 83.101 kb on - strand, within LRK55_RS18720 at 83.101 kb on - strand, within LRK55_RS18720 at 83.159 kb on + strand, within LRK55_RS18720 at 83.159 kb on + strand, within LRK55_RS18720 at 83.159 kb on + strand, within LRK55_RS18720 at 83.159 kb on + strand, within LRK55_RS18720 at 83.160 kb on - strand, within LRK55_RS18720 at 83.160 kb on - strand, within LRK55_RS18720 at 83.160 kb on - strand, within LRK55_RS18720 at 83.432 kb on + strand, within LRK55_RS18725 at 83.432 kb on + strand, within LRK55_RS18725 at 83.432 kb on + strand, within LRK55_RS18725 at 83.432 kb on + strand, within LRK55_RS18725 at 83.432 kb on + strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.433 kb on - strand, within LRK55_RS18725 at 83.477 kb on - strand, within LRK55_RS18725 at 83.477 kb on - strand, within LRK55_RS18725 at 83.574 kb on + strand, within LRK55_RS18725 at 83.574 kb on + strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.575 kb on - strand, within LRK55_RS18725 at 83.704 kb on - strand, within LRK55_RS18725 at 83.711 kb on + strand, within LRK55_RS18725 at 83.711 kb on + strand, within LRK55_RS18725 at 83.711 kb on + strand, within LRK55_RS18725 at 83.712 kb on - strand, within LRK55_RS18725 at 83.712 kb on - strand, within LRK55_RS18725 at 83.825 kb on - strand, within LRK55_RS18725 at 83.966 kb on + strand, within LRK55_RS18725 at 83.966 kb on + strand, within LRK55_RS18725 at 83.967 kb on - strand, within LRK55_RS18725 at 83.971 kb on - strand, within LRK55_RS18725 at 84.144 kb on - strand at 84.144 kb on - strand at 84.255 kb on + strand at 84.274 kb on + strand at 84.274 kb on + strand at 84.274 kb on + strand at 84.278 kb on + strand at 84.278 kb on + strand at 84.279 kb on - strand at 84.372 kb on + strand, within LRK55_RS18730 at 84.425 kb on + strand, within LRK55_RS18730 at 84.507 kb on + strand, within LRK55_RS18730 at 84.507 kb on + strand, within LRK55_RS18730 at 84.507 kb on + strand, within LRK55_RS18730 at 84.508 kb on - strand, within LRK55_RS18730 at 84.508 kb on - strand, within LRK55_RS18730 at 84.508 kb on - strand, within LRK55_RS18730 at 84.715 kb on + strand at 84.716 kb on - strand at 85.045 kb on - strand, within LRK55_RS18735 at 85.106 kb on + strand, within LRK55_RS18735 at 85.107 kb on - strand, within LRK55_RS18735 at 85.107 kb on - strand, within LRK55_RS18735 at 85.107 kb on - strand, within LRK55_RS18735 at 85.107 kb on - strand, within LRK55_RS18735 at 85.205 kb on + strand, within LRK55_RS18735 at 85.206 kb on - strand, within LRK55_RS18735 at 85.208 kb on + strand, within LRK55_RS18735
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM remove 82,311 - LRK55_RS18715 0.46 -0.5 82,311 - LRK55_RS18715 0.46 +3.1 82,363 - LRK55_RS18715 0.54 -0.0 82,363 - LRK55_RS18715 0.54 -1.2 82,401 - LRK55_RS18715 0.60 +1.8 82,401 - LRK55_RS18715 0.60 -2.7 82,520 + LRK55_RS18715 0.79 +0.5 82,520 + LRK55_RS18715 0.79 -0.6 82,521 - LRK55_RS18715 0.79 -0.1 82,567 + LRK55_RS18715 0.87 +1.0 82,567 + LRK55_RS18715 0.87 -0.2 82,567 + LRK55_RS18715 0.87 -0.1 82,567 + LRK55_RS18715 0.87 -0.9 82,567 + LRK55_RS18715 0.87 +0.1 82,568 - LRK55_RS18715 0.87 -1.0 82,568 - LRK55_RS18715 0.87 +0.4 82,568 - LRK55_RS18715 0.87 +0.5 82,568 - LRK55_RS18715 0.87 +0.7 82,841 + LRK55_RS18720 0.33 +0.5 82,954 + LRK55_RS18720 0.52 -0.2 82,954 + LRK55_RS18720 0.52 +0.4 82,955 - LRK55_RS18720 0.52 +0.4 82,955 - LRK55_RS18720 0.52 -0.2 83,040 - LRK55_RS18720 0.67 -1.9 83,040 - LRK55_RS18720 0.67 +1.1 83,101 - LRK55_RS18720 0.77 -0.5 83,101 - LRK55_RS18720 0.77 +1.0 83,159 + LRK55_RS18720 0.87 +1.1 83,159 + LRK55_RS18720 0.87 +0.3 83,159 + LRK55_RS18720 0.87 +0.4 83,159 + LRK55_RS18720 0.87 +0.2 83,160 - LRK55_RS18720 0.87 -2.2 83,160 - LRK55_RS18720 0.87 +0.2 83,160 - LRK55_RS18720 0.87 +0.4 83,432 + LRK55_RS18725 0.17 -0.4 83,432 + LRK55_RS18725 0.17 +0.1 83,432 + LRK55_RS18725 0.17 -2.1 83,432 + LRK55_RS18725 0.17 +1.3 83,432 + LRK55_RS18725 0.17 -0.9 83,433 - LRK55_RS18725 0.17 +0.1 83,433 - LRK55_RS18725 0.17 +0.2 83,433 - LRK55_RS18725 0.17 +0.3 83,433 - LRK55_RS18725 0.17 +0.5 83,433 - LRK55_RS18725 0.17 +1.2 83,433 - LRK55_RS18725 0.17 +0.5 83,433 - LRK55_RS18725 0.17 -0.7 83,477 - LRK55_RS18725 0.22 -1.8 83,477 - LRK55_RS18725 0.22 +0.1 83,574 + LRK55_RS18725 0.32 -0.1 83,574 + LRK55_RS18725 0.32 +0.3 83,575 - LRK55_RS18725 0.32 +0.2 83,575 - LRK55_RS18725 0.32 +0.6 83,575 - LRK55_RS18725 0.32 -0.9 83,575 - LRK55_RS18725 0.32 -1.1 83,575 - LRK55_RS18725 0.32 +1.4 83,575 - LRK55_RS18725 0.32 -0.7 83,575 - LRK55_RS18725 0.32 -0.1 83,575 - LRK55_RS18725 0.32 +0.4 83,704 - LRK55_RS18725 0.45 -0.1 83,711 + LRK55_RS18725 0.46 -0.1 83,711 + LRK55_RS18725 0.46 -0.2 83,711 + LRK55_RS18725 0.46 -1.8 83,712 - LRK55_RS18725 0.46 +0.3 83,712 - LRK55_RS18725 0.46 +1.9 83,825 - LRK55_RS18725 0.58 +1.0 83,966 + LRK55_RS18725 0.73 +0.0 83,966 + LRK55_RS18725 0.73 -0.3 83,967 - LRK55_RS18725 0.73 -2.8 83,971 - LRK55_RS18725 0.73 -0.4 84,144 - -1.8 84,144 - -0.5 84,255 + -0.0 84,274 + -1.9 84,274 + -0.5 84,274 + -0.1 84,278 + +0.5 84,278 + -2.2 84,279 - -2.4 84,372 + LRK55_RS18730 0.15 +0.8 84,425 + LRK55_RS18730 0.31 +2.4 84,507 + LRK55_RS18730 0.57 +0.9 84,507 + LRK55_RS18730 0.57 -0.1 84,507 + LRK55_RS18730 0.57 -0.8 84,508 - LRK55_RS18730 0.57 +0.2 84,508 - LRK55_RS18730 0.57 +0.0 84,508 - LRK55_RS18730 0.57 +0.3 84,715 + +1.1 84,716 - -1.4 85,045 - LRK55_RS18735 0.13 -0.2 85,106 + LRK55_RS18735 0.15 -1.3 85,107 - LRK55_RS18735 0.15 -2.8 85,107 - LRK55_RS18735 0.15 -1.2 85,107 - LRK55_RS18735 0.15 -1.0 85,107 - LRK55_RS18735 0.15 -0.9 85,205 + LRK55_RS18735 0.18 -2.2 85,206 - LRK55_RS18735 0.18 +0.5 85,208 + LRK55_RS18735 0.18 +0.5
Or see this region's nucleotide sequence