Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16545

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
3,592,711	+				-2.0
3,592,776	+		LRK55_RS16535	0.14	+0.3
3,592,787	-		LRK55_RS16535	0.15	-0.2
3,592,817	-		LRK55_RS16535	0.20	-0.2
3,592,840	+		LRK55_RS16535	0.23	-0.7
3,592,840	+		LRK55_RS16535	0.23	-0.9
3,592,841	-		LRK55_RS16535	0.23	-0.2
3,592,842	+		LRK55_RS16535	0.23	-0.9
3,592,842	+		LRK55_RS16535	0.23	-0.5
3,592,889	+		LRK55_RS16535	0.30	-0.5
3,592,889	+		LRK55_RS16535	0.30	+0.2
3,592,997	-		LRK55_RS16535	0.46	-0.2
3,593,011	-		LRK55_RS16535	0.48	+0.3
3,593,021	+		LRK55_RS16535	0.49	+0.7
3,593,033	+		LRK55_RS16535	0.51	-0.2
3,593,033	+		LRK55_RS16535	0.51	+0.5
3,593,051	+		LRK55_RS16535	0.54	+0.5
3,593,051	+		LRK55_RS16535	0.54	-0.9
3,593,051	+		LRK55_RS16535	0.54	-2.6
3,593,064	+		LRK55_RS16535	0.55	-0.6
3,593,068	+		LRK55_RS16535	0.56	+0.3
3,593,068	+		LRK55_RS16535	0.56	+0.3
3,593,072	+		LRK55_RS16535	0.57	-0.3
3,593,072	+		LRK55_RS16535	0.57	-0.2
3,593,072	+		LRK55_RS16535	0.57	-1.5
3,593,073	-		LRK55_RS16535	0.57	-1.6
3,593,099	-		LRK55_RS16535	0.61	+0.3
3,593,099	-		LRK55_RS16535	0.61	-1.9
3,593,124	+		LRK55_RS16535	0.64	-2.7
3,593,124	+		LRK55_RS16535	0.64	+0.8
3,593,124	+		LRK55_RS16535	0.64	-0.2
3,593,135	+		LRK55_RS16535	0.66	+0.3
3,593,136	-		LRK55_RS16535	0.66	-0.7
3,593,136	-		LRK55_RS16535	0.66	-0.9
3,593,136	-		LRK55_RS16535	0.66	-0.6
3,593,153	-		LRK55_RS16535	0.68	-0.3
3,593,159	+		LRK55_RS16535	0.69	+0.1
3,593,159	+		LRK55_RS16535	0.69	-0.0
3,593,160	-		LRK55_RS16535	0.69	-0.6
3,593,160	-		LRK55_RS16535	0.69	-0.6
3,593,160	-		LRK55_RS16535	0.69	+0.0
3,593,160	-		LRK55_RS16535	0.69	+0.1
3,593,160	-		LRK55_RS16535	0.69	-1.8
3,593,252	+		LRK55_RS16535	0.83	-0.1
3,593,253	-		LRK55_RS16535	0.83	-0.3
3,593,253	-		LRK55_RS16535	0.83	+0.2
3,593,253	-		LRK55_RS16535	0.83	+0.5
3,593,254	+		LRK55_RS16535	0.83	-1.6
3,593,254	+		LRK55_RS16535	0.83	-0.8
3,593,254	+		LRK55_RS16535	0.83	-1.2
3,593,254	+		LRK55_RS16535	0.83	-0.7
3,593,254	+		LRK55_RS16535	0.83	-0.1
3,593,254	+		LRK55_RS16535	0.83	+0.7
3,593,255	-		LRK55_RS16535	0.83	+2.9
3,593,255	-		LRK55_RS16535	0.83	-0.9
3,593,255	-		LRK55_RS16535	0.83	-3.9
3,593,336	+				+1.2
3,593,336	+				+0.2
3,593,367	+				+0.8
3,593,367	+				-0.2
3,593,367	+				-0.3
3,593,367	+				+0.0
3,593,367	+				-1.0
3,593,368	-				-2.6
3,593,368	-				-0.8
3,593,417	+				-0.3
3,593,417	+				+1.0
3,593,417	+				-0.1
3,593,417	+				+0.7
3,593,417	+				+0.7
3,593,417	+				+0.3
3,593,417	+				-0.3
3,593,417	+				-0.4
3,593,417	+				+1.7
3,593,417	+				+0.8
3,593,417	+				+2.0
3,593,417	+				+0.6
3,593,418	-				+0.1
3,593,418	-				+0.9
3,593,418	-				-1.2
3,593,418	-				-2.3
3,593,418	-				-1.5
3,593,418	-				-2.7
3,593,441	+				-0.8
3,593,457	+				-0.7
3,593,457	+				+0.7
3,593,457	+				+0.8
3,593,457	+				+0.4
3,593,457	+				-0.1
3,593,457	+				-0.0
3,593,457	+				-2.1
3,593,457	+				+0.1
3,593,458	-				-1.7
3,593,458	-				-2.2
3,593,458	-				-0.9
3,593,458	-				-0.7
3,593,458	-				-1.3
3,593,458	-				+0.5
3,593,458	-				-1.0
3,593,458	-				+1.4
3,593,458	-				-2.0
3,593,458	-				-0.6
3,593,466	+				+0.3
3,593,467	-				-0.4
3,593,521	-				+0.4
3,593,532	+		LRK55_RS16540	0.12	-2.5
3,593,533	-		LRK55_RS16540	0.13	+2.6
3,593,569	+		LRK55_RS16540	0.31	+0.6
3,593,569	+		LRK55_RS16540	0.31	-0.1
3,593,569	+		LRK55_RS16540	0.31	-0.1
3,593,570	-		LRK55_RS16540	0.32	-0.3
3,593,570	-		LRK55_RS16540	0.32	-1.0
3,593,570	-		LRK55_RS16540	0.32	-2.5
3,593,570	-		LRK55_RS16540	0.32	-1.2
3,593,570	-		LRK55_RS16540	0.32	-2.3
3,593,586	+		LRK55_RS16540	0.40	-2.9
3,593,586	+		LRK55_RS16540	0.40	+1.2
3,593,587	-		LRK55_RS16540	0.41	-2.6
3,593,587	-		LRK55_RS16540	0.41	-1.4
3,593,587	-		LRK55_RS16540	0.41	-1.5
3,593,587	-		LRK55_RS16540	0.41	-0.1
3,593,626	+		LRK55_RS16540	0.61	-1.8
3,593,627	-		LRK55_RS16540	0.61	-0.3
3,593,640	+		LRK55_RS16540	0.68	-0.2
3,593,640	+		LRK55_RS16540	0.68	+2.2
3,593,640	+		LRK55_RS16540	0.68	-0.7
3,593,641	-		LRK55_RS16540	0.68	-3.3
3,593,641	-		LRK55_RS16540	0.68	+0.1
3,593,650	+		LRK55_RS16540	0.73	-1.3
3,593,650	+		LRK55_RS16540	0.73	-1.3
3,593,651	-		LRK55_RS16540	0.73	+2.7
3,593,713	+				+0.9
3,593,714	-				+0.4
3,593,714	-				+1.5
3,593,714	-				-1.0
3,593,714	-				-0.7
3,593,714	-				-2.1
3,593,714	-				+0.6
3,593,714	-				-0.6
3,593,714	-				-0.4
3,593,715	-				+1.2
3,593,780	-		LRK55_RS16545	0.15	-1.5
3,593,802	+		LRK55_RS16545	0.19	-2.6
3,593,802	+		LRK55_RS16545	0.19	-2.2
3,593,802	+		LRK55_RS16545	0.19	+0.2
3,593,803	-		LRK55_RS16545	0.20	-1.2
3,593,803	-		LRK55_RS16545	0.20	+1.2
3,593,946	+		LRK55_RS16545	0.47	-0.2
3,593,947	-		LRK55_RS16545	0.47	+0.5
3,593,947	-		LRK55_RS16545	0.47	+0.4
3,593,947	-		LRK55_RS16545	0.47	-1.2
3,593,947	-		LRK55_RS16545	0.47	-3.3
3,593,947	-		LRK55_RS16545	0.47	+0.3
3,593,947	-		LRK55_RS16545	0.47	+0.4
3,593,947	-		LRK55_RS16545	0.47	-1.0
3,593,947	-		LRK55_RS16545	0.47	-0.0
3,593,947	-		LRK55_RS16545	0.47	-0.6
3,593,947	-		LRK55_RS16545	0.47	+0.7
3,593,947	-		LRK55_RS16545	0.47	-0.2
3,594,112	+		LRK55_RS16545	0.78	-1.0
3,594,112	+		LRK55_RS16545	0.78	-0.0
3,594,112	+		LRK55_RS16545	0.78	-1.0
3,594,112	+		LRK55_RS16545	0.78	+1.2
3,594,113	-		LRK55_RS16545	0.78	-0.6
3,594,329	+		LRK55_RS16550	0.10	-1.0
3,594,330	-		LRK55_RS16550	0.10	-2.3
3,594,330	-		LRK55_RS16550	0.10	-1.1
3,594,362	-		LRK55_RS16550	0.13	-0.0
3,594,362	-		LRK55_RS16550	0.13	-2.0
3,594,432	+		LRK55_RS16550	0.20	+0.4
3,594,432	+		LRK55_RS16550	0.20	+0.3
3,594,432	+		LRK55_RS16550	0.20	-2.2
3,594,432	+		LRK55_RS16550	0.20	-0.2
3,594,432	+		LRK55_RS16550	0.20	-1.6
3,594,432	+		LRK55_RS16550	0.20	+0.2
3,594,432	+		LRK55_RS16550	0.20	-0.3
3,594,432	+		LRK55_RS16550	0.20	+0.8
3,594,432	+		LRK55_RS16550	0.20	-2.0
3,594,432	+		LRK55_RS16550	0.20	-0.5
3,594,432	+		LRK55_RS16550	0.20	+0.5
3,594,432	+		LRK55_RS16550	0.20	+0.6
3,594,432	+		LRK55_RS16550	0.20	+2.0
3,594,432	+		LRK55_RS16550	0.20	+0.4
3,594,432	+		LRK55_RS16550	0.20	-1.0
3,594,433	-		LRK55_RS16550	0.20	-1.0
3,594,433	-		LRK55_RS16550	0.20	+0.8
3,594,433	-		LRK55_RS16550	0.20	+1.1
3,594,433	-		LRK55_RS16550	0.20	-0.1
3,594,433	-		LRK55_RS16550	0.20	-0.6
3,594,433	-		LRK55_RS16550	0.20	-0.1
3,594,433	-		LRK55_RS16550	0.20	+0.8
3,594,433	-		LRK55_RS16550	0.20	+1.3
3,594,433	-		LRK55_RS16550	0.20	-1.5
3,594,433	-		LRK55_RS16550	0.20	+0.0
3,594,433	-		LRK55_RS16550	0.20	-1.3
3,594,433	-		LRK55_RS16550	0.20	-3.5
3,594,433	-		LRK55_RS16550	0.20	+1.4
3,594,433	-		LRK55_RS16550	0.20	-0.2
3,594,453	-		LRK55_RS16550	0.22	+0.0
3,594,480	+		LRK55_RS16550	0.24	-2.0
3,594,543	+		LRK55_RS16550	0.30	-2.5
3,594,543	+		LRK55_RS16550	0.30	-0.6
3,594,543	+		LRK55_RS16550	0.30	-1.3
3,594,543	+		LRK55_RS16550	0.30	+0.5
3,594,544	-		LRK55_RS16550	0.30	+0.8
3,594,544	-		LRK55_RS16550	0.30	-0.9
3,594,544	-		LRK55_RS16550	0.30	-0.9
3,594,544	-		LRK55_RS16550	0.30	-0.6
3,594,544	-		LRK55_RS16550	0.30	-2.0
3,594,544	-		LRK55_RS16550	0.30	-0.8
3,594,544	-		LRK55_RS16550	0.30	-1.7
3,594,631	-		LRK55_RS16550	0.39	+0.8
3,594,631	-		LRK55_RS16550	0.39	+0.8
3,594,631	-		LRK55_RS16550	0.39	-0.3
3,594,685	-		LRK55_RS16550	0.44	-1.1
3,594,685	-		LRK55_RS16550	0.44	-1.0
3,594,685	-		LRK55_RS16550	0.44	-1.0
3,594,685	-		LRK55_RS16550	0.44	-3.1
3,594,685	-		LRK55_RS16550	0.44	-0.1
3,594,685	-		LRK55_RS16550	0.44	-0.7
3,594,722	-		LRK55_RS16550	0.47	-2.0
3,594,741	-		LRK55_RS16550	0.49	+1.1
3,594,741	-		LRK55_RS16550	0.49	-0.0
3,594,750	-		LRK55_RS16550	0.50	-2.0
3,594,824	-		LRK55_RS16550	0.57	-0.4
3,594,845	+		LRK55_RS16550	0.59	+0.6
3,594,845	+		LRK55_RS16550	0.59	-0.3
3,594,845	+		LRK55_RS16550	0.59	+0.4
3,594,913	+		LRK55_RS16550	0.65	-0.8
3,594,913	+		LRK55_RS16550	0.65	-1.1
3,594,914	-		LRK55_RS16550	0.65	+1.6
3,594,914	-		LRK55_RS16550	0.65	-1.7
3,594,914	-		LRK55_RS16550	0.65	+0.4
3,594,914	-		LRK55_RS16550	0.65	-2.0
3,594,914	-		LRK55_RS16550	0.65	-0.5
3,594,926	+		LRK55_RS16550	0.66	-0.0
3,594,926	+		LRK55_RS16550	0.66	-2.6
3,594,926	+		LRK55_RS16550	0.66	+1.5
3,594,927	-		LRK55_RS16550	0.66	+0.6
3,594,927	-		LRK55_RS16550	0.66	+0.0
3,594,927	-		LRK55_RS16550	0.66	+0.3
3,594,927	-		LRK55_RS16550	0.66	-2.8
3,594,951	+		LRK55_RS16550	0.69	-0.3
3,595,009	-		LRK55_RS16550	0.74	-0.3
3,595,087	+		LRK55_RS16550	0.81	+0.6
3,595,088	-		LRK55_RS16550	0.81	+0.0
3,595,088	-		LRK55_RS16550	0.81	-0.5
3,595,200	-				+0.3
3,595,200	-				+1.7
3,595,200	-				-0.3
3,595,200	-				+0.3
3,595,200	-				-0.6
3,595,200	-				-1.8
3,595,200	-				-1.0
3,595,206	-				-3.3
3,595,221	+				-1.4
3,595,222	-				-2.1