Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14355

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
3,167,089	+		LRK55_RS14345	0.58	+0.5
3,167,089	+		LRK55_RS14345	0.58	+0.5
3,167,089	+		LRK55_RS14345	0.58	-1.4
3,167,089	+		LRK55_RS14345	0.58	+0.7
3,167,090	-		LRK55_RS14345	0.58	-0.3
3,167,090	-		LRK55_RS14345	0.58	-1.0
3,167,221	+		LRK55_RS14345	0.79	-0.0
3,167,221	+		LRK55_RS14345	0.79	+1.4
3,167,221	+		LRK55_RS14345	0.79	+0.7
3,167,221	+		LRK55_RS14345	0.79	-0.1
3,167,339	+				+1.3
3,167,339	+				-0.6
3,167,340	-				+1.0
3,167,340	-				-0.5
3,167,340	-				-1.0
3,167,340	-				-0.2
3,167,340	-				+0.2
3,167,340	-				+1.4
3,167,340	-				+0.6
3,167,360	+				+0.2
3,167,557	+		LRK55_RS14350	0.29	+0.1
3,167,557	+		LRK55_RS14350	0.29	+0.6
3,167,558	-		LRK55_RS14350	0.29	-2.1
3,167,721	+		LRK55_RS14350	0.57	+0.1
3,167,722	-		LRK55_RS14350	0.57	-0.1
3,167,722	-		LRK55_RS14350	0.57	+0.0
3,167,740	+		LRK55_RS14350	0.60	-0.2
3,167,740	+		LRK55_RS14350	0.60	+0.9
3,167,741	-		LRK55_RS14350	0.60	+0.0
3,167,741	-		LRK55_RS14350	0.60	-1.2
3,167,741	-		LRK55_RS14350	0.60	-0.4
3,167,741	-		LRK55_RS14350	0.60	-0.7
3,167,741	-		LRK55_RS14350	0.60	+0.2
3,167,773	-		LRK55_RS14350	0.65	+1.6
3,168,058	+				-2.1
3,168,116	+				+1.9
3,168,116	+				+0.4
3,168,116	+				+0.5
3,168,116	+				+0.5
3,168,116	+				+0.8
3,168,116	+				+0.9
3,168,117	-				-1.0
3,168,117	-				+0.2
3,168,117	-				+0.0
3,168,132	+				+0.4
3,168,132	+				-0.3
3,168,133	-				+0.6
3,168,133	-				-0.0
3,168,133	-				-0.6
3,168,566	+		LRK55_RS14355	0.55	+1.1
3,168,566	+		LRK55_RS14355	0.55	-0.9
3,168,566	+		LRK55_RS14355	0.55	-0.6
3,168,567	-		LRK55_RS14355	0.55	-1.7
3,168,731	+		LRK55_RS14355	0.73	+1.1
3,168,731	+		LRK55_RS14355	0.73	+0.6
3,168,731	+		LRK55_RS14355	0.73	+0.3
3,168,731	+		LRK55_RS14355	0.73	+0.6
3,168,732	-		LRK55_RS14355	0.73	-0.7
3,168,732	-		LRK55_RS14355	0.73	-2.5
3,168,876	-		LRK55_RS14355	0.89	-1.8
3,168,876	-		LRK55_RS14355	0.89	-0.9
3,168,876	-		LRK55_RS14355	0.89	+1.9
3,168,876	-		LRK55_RS14355	0.89	+1.4
3,168,876	-		LRK55_RS14355	0.89	+0.6
3,169,414	+				-0.5
3,169,414	+				-1.7
3,169,414	+				-0.2
3,169,414	+				-0.2
3,169,415	-				-0.0
3,169,415	-				-0.9
3,169,415	-				-1.7
3,169,415	-				+0.5
3,169,415	-				+1.1
3,169,415	-				+1.0
3,169,415	-				+2.7
3,169,415	-				-2.8
3,169,415	-				-1.1
3,169,588	+		LRK55_RS14365	0.18	+0.0
3,169,766	+		LRK55_RS14365	0.57	-1.9
3,169,766	+		LRK55_RS14365	0.57	+0.9
3,169,766	+		LRK55_RS14365	0.57	-0.8
3,169,766	+		LRK55_RS14365	0.57	-0.9
3,169,767	-		LRK55_RS14365	0.57	-0.5
3,169,767	-		LRK55_RS14365	0.57	-0.7
3,169,767	-		LRK55_RS14365	0.57	-1.6
3,169,767	-		LRK55_RS14365	0.57	-1.4
3,169,835	+		LRK55_RS14365	0.72	+0.7
3,169,841	+		LRK55_RS14365	0.73	+0.9
3,169,841	+		LRK55_RS14365	0.73	-0.1
3,169,841	+		LRK55_RS14365	0.73	+0.9
3,169,841	+		LRK55_RS14365	0.73	-0.8
3,169,841	+		LRK55_RS14365	0.73	-2.0
3,169,841	+		LRK55_RS14365	0.73	+0.1
3,169,841	+		LRK55_RS14365	0.73	+0.5
3,169,841	+		LRK55_RS14365	0.73	-0.3
3,169,841	+		LRK55_RS14365	0.73	-1.7
3,169,841	+		LRK55_RS14365	0.73	+0.4
3,169,841	+		LRK55_RS14365	0.73	+2.2
3,169,841	+		LRK55_RS14365	0.73	+0.0
3,169,841	+		LRK55_RS14365	0.73	-2.5
3,169,841	+		LRK55_RS14365	0.73	+0.8
3,169,841	+		LRK55_RS14365	0.73	-1.2
3,169,841	+		LRK55_RS14365	0.73	-0.1
3,169,842	-		LRK55_RS14365	0.73	+0.4
3,169,842	-		LRK55_RS14365	0.73	+0.1
3,169,842	-		LRK55_RS14365	0.73	+0.1
3,169,842	-		LRK55_RS14365	0.73	+1.3
3,169,842	-		LRK55_RS14365	0.73	-1.1
3,169,842	-		LRK55_RS14365	0.73	+1.6
3,169,842	-		LRK55_RS14365	0.73	+0.5
3,169,842	-		LRK55_RS14365	0.73	-1.1
3,169,842	-		LRK55_RS14365	0.73	-1.4
3,169,842	-		LRK55_RS14365	0.73	+0.7
3,169,842	-		LRK55_RS14365	0.73	-0.1
3,169,842	-		LRK55_RS14365	0.73	-2.5
3,169,842	-		LRK55_RS14365	0.73	-0.7
3,169,842	-		LRK55_RS14365	0.73	-0.2
3,169,842	-		LRK55_RS14365	0.73	-0.0
3,169,874	+		LRK55_RS14365	0.80	-2.8
3,169,875	-		LRK55_RS14365	0.81	-1.1
3,169,875	-		LRK55_RS14365	0.81	+0.0
3,169,875	-		LRK55_RS14365	0.81	-1.1
3,169,875	-		LRK55_RS14365	0.81	+0.1
3,169,875	-		LRK55_RS14365	0.81	-0.9
3,169,932	-				+1.2