Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09895

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,168,255	+				+2.4
2,168,255	+				-3.1
2,168,255	+				+1.3
2,168,255	+				-1.1
2,168,256	-				+0.3
2,168,256	-				+0.7
2,168,256	-				+1.7
2,168,256	-				-0.3
2,168,256	-				-0.6
2,168,533	+		LRK55_RS09890	0.30	+0.5
2,168,534	-		LRK55_RS09890	0.30	+0.1
2,168,534	-		LRK55_RS09890	0.30	+1.0
2,168,534	-		LRK55_RS09890	0.30	+3.3
2,168,534	-		LRK55_RS09890	0.30	-0.3
2,168,534	-		LRK55_RS09890	0.30	-1.8
2,168,560	+		LRK55_RS09890	0.33	-0.8
2,168,560	+		LRK55_RS09890	0.33	-0.7
2,168,560	+		LRK55_RS09890	0.33	-0.2
2,168,561	-		LRK55_RS09890	0.33	+0.1
2,168,561	-		LRK55_RS09890	0.33	-0.8
2,168,629	+		LRK55_RS09890	0.40	+0.4
2,168,630	-		LRK55_RS09890	0.40	+0.3
2,168,630	-		LRK55_RS09890	0.40	+0.8
2,168,630	-		LRK55_RS09890	0.40	+0.5
2,168,749	+		LRK55_RS09890	0.54	+0.2
2,168,749	+		LRK55_RS09890	0.54	-1.1
2,168,749	+		LRK55_RS09890	0.54	-1.6
2,169,146	-				+0.1
2,169,146	-				+0.1
2,169,201	-				+0.3
2,169,201	-				-0.1
2,169,202	+				-0.2
2,169,202	+				-0.4
2,169,202	+				+0.1
2,169,202	+				-0.1
2,169,202	+				-1.9
2,169,202	+				+0.7
2,169,202	+				-0.1
2,169,203	-				-0.2
2,169,203	-				-0.0
2,169,203	-				+0.2
2,169,203	-				+0.1
2,169,203	-				-1.0
2,169,596	+		LRK55_RS09895	0.33	-1.8
2,169,596	+		LRK55_RS09895	0.33	-1.5
2,169,596	+		LRK55_RS09895	0.33	-0.3
2,169,596	+		LRK55_RS09895	0.33	+0.3
2,169,597	-		LRK55_RS09895	0.33	-1.2
2,169,597	-		LRK55_RS09895	0.33	-2.0
2,169,597	-		LRK55_RS09895	0.33	-3.5
2,169,597	-		LRK55_RS09895	0.33	-3.2
2,169,597	-		LRK55_RS09895	0.33	-0.2
2,169,597	-		LRK55_RS09895	0.33	+0.6
2,169,602	+		LRK55_RS09895	0.33	+0.9
2,169,602	+		LRK55_RS09895	0.33	-3.0
2,169,603	-		LRK55_RS09895	0.33	+0.9
2,169,603	-		LRK55_RS09895	0.33	-0.4
2,169,603	-		LRK55_RS09895	0.33	-0.4
2,169,603	-		LRK55_RS09895	0.33	-1.3
2,169,603	-		LRK55_RS09895	0.33	+3.0
2,170,071	-		LRK55_RS09895	0.72	+1.5
2,170,071	-		LRK55_RS09895	0.72	+1.6
2,170,071	-		LRK55_RS09895	0.72	+1.9
2,170,251	-		LRK55_RS09895	0.87	-0.4
2,170,465	+				+0.2
2,170,466	-				+0.4
2,170,944	+		LRK55_RS09900	0.53	-0.9
2,170,944	+		LRK55_RS09900	0.53	+0.7
2,170,944	+		LRK55_RS09900	0.53	-1.1
2,170,945	-		LRK55_RS09900	0.53	-0.8
2,170,977	+		LRK55_RS09900	0.56	+1.5
2,170,977	+		LRK55_RS09900	0.56	-1.9
2,170,977	+		LRK55_RS09900	0.56	+0.6
2,170,977	+		LRK55_RS09900	0.56	+0.8
2,170,977	+		LRK55_RS09900	0.56	+0.7
2,170,977	+		LRK55_RS09900	0.56	+1.0
2,170,977	+		LRK55_RS09900	0.56	-2.4
2,170,978	-		LRK55_RS09900	0.56	-0.1
2,170,978	-		LRK55_RS09900	0.56	+0.9
2,170,978	-		LRK55_RS09900	0.56	-0.1
2,170,978	-		LRK55_RS09900	0.56	+1.1
2,170,980	+		LRK55_RS09900	0.56	+0.6
2,170,980	+		LRK55_RS09900	0.56	+0.3
2,170,981	-		LRK55_RS09900	0.57	-2.6
2,170,981	-		LRK55_RS09900	0.57	+0.1
2,171,251	-		LRK55_RS09900	0.82	-0.4
2,171,251	-		LRK55_RS09900	0.82	+1.6