Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09865

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,163,260	+		LRK55_RS09860	0.26	-3.7
2,163,260	+		LRK55_RS09860	0.26	-0.9
2,163,260	+		LRK55_RS09860	0.26	+0.1
2,163,260	+		LRK55_RS09860	0.26	+0.5
2,163,260	+		LRK55_RS09860	0.26	-0.8
2,163,261	-		LRK55_RS09860	0.26	-1.1
2,163,261	-		LRK55_RS09860	0.26	+1.2
2,163,261	-		LRK55_RS09860	0.26	-0.4
2,163,261	-		LRK55_RS09860	0.26	-0.5
2,163,261	-		LRK55_RS09860	0.26	+0.1
2,163,609	-		LRK55_RS09860	0.66	+0.9
2,163,782	+		LRK55_RS09860	0.85	-0.1
2,163,782	+		LRK55_RS09860	0.85	-0.1
2,163,783	-		LRK55_RS09860	0.85	-1.7
2,163,783	-		LRK55_RS09860	0.85	-2.5
2,163,815	+		LRK55_RS09860	0.89	-1.3
2,163,848	+				+1.5
2,163,945	-				-1.9
2,163,957	+				-0.2
2,163,958	-				+1.2
2,163,958	-				+0.4
2,163,958	-				-1.6
2,163,958	-				+0.0
2,163,958	-				+0.5
2,164,193	+		LRK55_RS09865	0.32	-0.9
2,164,193	+		LRK55_RS09865	0.32	+0.2
2,164,194	-		LRK55_RS09865	0.32	+0.6
2,164,194	-		LRK55_RS09865	0.32	+0.1
2,164,221	+		LRK55_RS09865	0.37	-1.5
2,164,370	+		LRK55_RS09865	0.62	-0.6
2,164,371	-		LRK55_RS09865	0.63	+0.4
2,164,371	-		LRK55_RS09865	0.63	+1.3
2,164,514	+		LRK55_RS09865	0.87	+1.6
2,164,515	-		LRK55_RS09865	0.87	-1.5
2,164,586	+				-0.3
2,164,587	-				+0.2
2,164,649	+				-1.6
2,164,900	+				+0.5
2,164,900	+				+0.5
2,164,901	-				-0.2
2,164,901	-				-0.5
2,164,992	+		LRK55_RS09870	0.13	+0.4
2,164,992	+		LRK55_RS09870	0.13	-1.5
2,164,992	+		LRK55_RS09870	0.13	+0.5
2,164,992	+		LRK55_RS09870	0.13	+0.7
2,164,992	+		LRK55_RS09870	0.13	+0.0
2,164,993	-		LRK55_RS09870	0.13	-1.3
2,164,993	-		LRK55_RS09870	0.13	-1.3