Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS08365

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
1,828,569	+				-0.3
1,828,569	+				-2.8
1,828,569	+				+2.0
1,828,569	+				-2.1
1,828,569	+				+0.7
1,828,569	+				+0.9
1,828,569	+				-0.6
1,828,569	+				-2.2
1,828,569	+				-2.3
1,828,569	+				+0.2
1,828,569	+				-0.7
1,828,569	+				-0.7
1,828,569	+				-0.5
1,828,569	+				-3.3
1,828,570	-				-1.6
1,828,570	-				+0.6
1,828,570	-				+0.7
1,828,570	-				-0.6
1,828,570	-				-0.3
1,828,570	-				-2.4
1,828,570	-				-0.4
1,828,570	-				-0.0
1,828,570	-				-1.1
1,828,705	+		LRK55_RS08360	0.12	-0.3
1,828,705	+		LRK55_RS08360	0.12	+0.4
1,828,705	+		LRK55_RS08360	0.12	+0.1
1,828,705	+		LRK55_RS08360	0.12	-1.8
1,828,705	+		LRK55_RS08360	0.12	-1.9
1,828,705	+		LRK55_RS08360	0.12	-1.1
1,828,706	-		LRK55_RS08360	0.12	-2.8
1,828,706	-		LRK55_RS08360	0.12	-3.7
1,828,706	-		LRK55_RS08360	0.12	-1.2
1,828,706	-		LRK55_RS08360	0.12	-1.6
1,828,706	-		LRK55_RS08360	0.12	-2.1
1,828,706	-		LRK55_RS08360	0.12	-1.3
1,829,128	+		LRK55_RS08360	0.63	-0.8
1,829,158	+		LRK55_RS08360	0.67	-1.0
1,829,158	+		LRK55_RS08360	0.67	-0.3
1,829,158	+		LRK55_RS08360	0.67	+0.2
1,829,158	+		LRK55_RS08360	0.67	-3.2
1,829,158	+		LRK55_RS08360	0.67	-1.5
1,829,158	+		LRK55_RS08360	0.67	-1.2
1,829,158	+		LRK55_RS08360	0.67	-0.1
1,829,159	-		LRK55_RS08360	0.67	+0.8
1,829,159	-		LRK55_RS08360	0.67	-1.6
1,829,159	-		LRK55_RS08360	0.67	-1.9
1,829,159	-		LRK55_RS08360	0.67	-2.1
1,829,159	-		LRK55_RS08360	0.67	-1.9
1,829,159	-		LRK55_RS08360	0.67	-3.6
1,829,248	+		LRK55_RS08360	0.78	-2.2
1,829,248	+		LRK55_RS08360	0.78	-0.5
1,829,249	-		LRK55_RS08360	0.78	-0.6
1,829,249	-		LRK55_RS08360	0.78	-4.8
1,829,249	-		LRK55_RS08360	0.78	+0.1
1,829,260	+		LRK55_RS08360	0.79	-1.1
1,829,260	+		LRK55_RS08360	0.79	-1.9
1,829,261	-		LRK55_RS08360	0.79	-1.9
1,829,261	-		LRK55_RS08360	0.79	+0.0
1,829,261	-		LRK55_RS08360	0.79	+3.0
1,829,261	-		LRK55_RS08360	0.79	+0.2
1,829,404	+				-1.7
1,829,404	+				-2.8
1,829,404	+				+0.9
1,829,404	+				-0.2
1,829,405	-				-3.9
1,829,405	-				-1.4
1,829,832	-				-0.1
1,829,899	+		LRK55_RS08370	0.16	-0.2
1,829,899	+		LRK55_RS08370	0.16	+1.9
1,829,899	+		LRK55_RS08370	0.16	-0.3
1,829,900	-		LRK55_RS08370	0.16	-0.6
1,829,900	-		LRK55_RS08370	0.16	+0.1
1,829,900	-		LRK55_RS08370	0.16	-0.9
1,829,900	-		LRK55_RS08370	0.16	+1.7
1,830,076	+		LRK55_RS08370	0.48	-1.6
1,830,076	+		LRK55_RS08370	0.48	-1.6
1,830,076	+		LRK55_RS08370	0.48	-1.4
1,830,077	-		LRK55_RS08370	0.49	+0.6
1,830,077	-		LRK55_RS08370	0.49	+0.5
1,830,384	+				-0.9
1,830,384	+				-0.5
1,830,384	+				-1.5
1,830,385	-				+2.2
1,830,385	-				-0.7
1,830,385	-				-3.0
1,830,405	+				-0.2
1,830,405	+				+0.4
1,830,405	+				-1.1
1,830,405	+				+1.8
1,830,405	+				-1.6
1,830,405	+				+2.2
1,830,405	+				+0.3
1,830,406	-				-0.4
1,830,406	-				-1.3
1,830,406	-				-0.8
1,830,406	-				-0.3
1,830,406	-				+0.2
1,830,406	-				+0.5
1,830,406	-				+0.3
1,830,420	+				-0.4
1,830,420	+				+0.2
1,830,420	+				+1.3
1,830,421	-				+0.2
1,830,421	-				+0.4
1,830,600	+		LRK55_RS08375	0.43	-0.4
1,830,600	+		LRK55_RS08375	0.43	-0.6
1,830,601	-		LRK55_RS08375	0.44	-1.1
1,830,601	-		LRK55_RS08375	0.44	-0.1
1,830,601	-		LRK55_RS08375	0.44	+0.2
1,830,601	-		LRK55_RS08375	0.44	+0.3
1,830,601	-		LRK55_RS08375	0.44	-0.8
1,830,684	+		LRK55_RS08375	0.59	+0.1
1,830,685	-		LRK55_RS08375	0.59	+0.3