Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07125

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
1,541,227	+		LRK55_RS07120	0.48	-2.3
1,541,228	-		LRK55_RS07120	0.48	+0.1
1,541,228	-		LRK55_RS07120	0.48	+0.7
1,541,228	-		LRK55_RS07120	0.48	+0.9
1,541,228	-		LRK55_RS07120	0.48	-0.1
1,541,314	+		LRK55_RS07120	0.53	+0.8
1,541,314	+		LRK55_RS07120	0.53	-0.0
1,541,314	+		LRK55_RS07120	0.53	+1.6
1,541,315	-		LRK55_RS07120	0.53	-2.8
1,541,405	+		LRK55_RS07120	0.58	-2.5
1,541,406	-		LRK55_RS07120	0.58	+2.0
1,541,438	+		LRK55_RS07120	0.59	-3.0
1,541,438	+		LRK55_RS07120	0.59	-0.9
1,541,438	+		LRK55_RS07120	0.59	-1.0
1,541,439	-		LRK55_RS07120	0.60	-1.3
1,541,439	-		LRK55_RS07120	0.60	+0.4
1,541,439	-		LRK55_RS07120	0.60	-2.4
1,541,440	+		LRK55_RS07120	0.60	+0.7
1,541,440	+		LRK55_RS07120	0.60	-1.8
1,541,440	+		LRK55_RS07120	0.60	-1.6
1,541,441	-		LRK55_RS07120	0.60	-0.3
1,541,441	-		LRK55_RS07120	0.60	-0.7
1,541,441	-		LRK55_RS07120	0.60	+2.0
1,541,441	-		LRK55_RS07120	0.60	+1.0
1,541,441	-		LRK55_RS07120	0.60	-0.6
1,541,441	-		LRK55_RS07120	0.60	-2.1
1,541,441	-		LRK55_RS07120	0.60	-2.0
1,541,441	-		LRK55_RS07120	0.60	+1.2
1,541,769	+		LRK55_RS07120	0.77	-0.9
1,541,813	-		LRK55_RS07120	0.80	-1.4
1,541,893	+		LRK55_RS07120	0.84	-0.4
1,541,893	+		LRK55_RS07120	0.84	-1.5
1,541,893	+		LRK55_RS07120	0.84	+0.9
1,541,893	+		LRK55_RS07120	0.84	+0.1
1,541,893	+		LRK55_RS07120	0.84	-2.0
1,541,893	+		LRK55_RS07120	0.84	+0.3
1,541,893	+		LRK55_RS07120	0.84	+0.2
1,541,893	+		LRK55_RS07120	0.84	-0.4
1,541,893	+		LRK55_RS07120	0.84	-2.7
1,541,893	+		LRK55_RS07120	0.84	-0.1
1,541,893	+		LRK55_RS07120	0.84	-0.6
1,541,894	-		LRK55_RS07120	0.84	-0.6
1,541,894	-		LRK55_RS07120	0.84	-0.0
1,541,894	-		LRK55_RS07120	0.84	-1.4
1,541,894	-		LRK55_RS07120	0.84	+0.8
1,541,941	+		LRK55_RS07120	0.87	+1.1
1,541,942	-		LRK55_RS07120	0.87	+0.6
1,541,942	-		LRK55_RS07120	0.87	-1.1
1,541,942	-		LRK55_RS07120	0.87	+0.9
1,541,942	-		LRK55_RS07120	0.87	+0.5
1,541,942	-		LRK55_RS07120	0.87	-0.8
1,542,345	+				-2.6
1,542,345	+				-1.5
1,542,345	+				+0.6
1,542,346	-				+1.0
1,542,375	+				+0.7
1,542,378	+				-0.4
1,542,378	+				+0.2
1,542,378	+				-0.7
1,542,378	+				+0.3
1,542,379	-				-0.7
1,542,379	-				+0.6
1,542,584	+		LRK55_RS07125	0.19	+1.7
1,542,584	+		LRK55_RS07125	0.19	+2.8
1,542,584	+		LRK55_RS07125	0.19	-2.7
1,542,584	+		LRK55_RS07125	0.19	+0.8
1,542,584	+		LRK55_RS07125	0.19	-0.9
1,542,585	-		LRK55_RS07125	0.19	-2.2
1,542,627	+		LRK55_RS07125	0.21	+1.6
1,542,814	-		LRK55_RS07125	0.30	-0.1
1,542,939	+		LRK55_RS07125	0.36	+0.4
1,542,975	+		LRK55_RS07125	0.38	+0.2
1,542,975	+		LRK55_RS07125	0.38	-1.4
1,542,975	+		LRK55_RS07125	0.38	-1.1
1,542,975	+		LRK55_RS07125	0.38	-1.3
1,542,975	+		LRK55_RS07125	0.38	-0.8
1,542,975	+		LRK55_RS07125	0.38	+0.9
1,542,975	+		LRK55_RS07125	0.38	-3.0
1,542,975	+		LRK55_RS07125	0.38	-0.8
1,542,975	+		LRK55_RS07125	0.38	-0.2
1,542,975	+		LRK55_RS07125	0.38	-2.4
1,542,975	+		LRK55_RS07125	0.38	+2.4
1,542,975	+		LRK55_RS07125	0.38	+0.5
1,542,975	+		LRK55_RS07125	0.38	-0.4
1,542,975	+		LRK55_RS07125	0.38	+2.2
1,542,975	+		LRK55_RS07125	0.38	-0.1
1,542,975	+		LRK55_RS07125	0.38	+0.2
1,542,975	+		LRK55_RS07125	0.38	-0.8
1,542,975	+		LRK55_RS07125	0.38	+0.7
1,542,975	+		LRK55_RS07125	0.38	+0.4
1,542,976	-		LRK55_RS07125	0.38	+0.7
1,542,976	-		LRK55_RS07125	0.38	+0.1
1,542,976	-		LRK55_RS07125	0.38	-0.4
1,542,976	-		LRK55_RS07125	0.38	-1.4
1,542,976	-		LRK55_RS07125	0.38	+1.3
1,542,976	-		LRK55_RS07125	0.38	+1.7
1,542,976	-		LRK55_RS07125	0.38	-0.4
1,542,976	-		LRK55_RS07125	0.38	-0.4
1,542,976	-		LRK55_RS07125	0.38	-1.0
1,542,976	-		LRK55_RS07125	0.38	-1.6
1,542,976	-		LRK55_RS07125	0.38	+0.8
1,542,976	-		LRK55_RS07125	0.38	-3.5
1,542,976	-		LRK55_RS07125	0.38	-1.6
1,543,020	+		LRK55_RS07125	0.40	-1.8
1,543,020	+		LRK55_RS07125	0.40	-0.2
1,543,020	+		LRK55_RS07125	0.40	+1.1
1,543,021	-		LRK55_RS07125	0.40	-0.1
1,543,028	+		LRK55_RS07125	0.41	+0.6
1,543,029	-		LRK55_RS07125	0.41	-3.8
1,543,122	+		LRK55_RS07125	0.45	-0.4
1,543,123	-		LRK55_RS07125	0.45	-1.2
1,543,123	-		LRK55_RS07125	0.45	-0.2
1,543,123	-		LRK55_RS07125	0.45	+2.1
1,543,148	+		LRK55_RS07125	0.46	+1.1
1,543,148	+		LRK55_RS07125	0.46	+1.5
1,543,176	+		LRK55_RS07125	0.48	-1.5
1,543,176	+		LRK55_RS07125	0.48	+1.1
1,543,176	+		LRK55_RS07125	0.48	+1.8
1,543,177	-		LRK55_RS07125	0.48	-1.2
1,543,177	-		LRK55_RS07125	0.48	-0.7
1,543,177	-		LRK55_RS07125	0.48	-0.2
1,543,381	+		LRK55_RS07125	0.58	+1.1
1,543,596	+		LRK55_RS07125	0.68	+0.6
1,543,596	+		LRK55_RS07125	0.68	-0.6
1,543,596	+		LRK55_RS07125	0.68	-2.5
1,543,596	+		LRK55_RS07125	0.68	-1.7
1,543,596	+		LRK55_RS07125	0.68	-1.1
1,543,596	+		LRK55_RS07125	0.68	-0.2
1,543,596	+		LRK55_RS07125	0.68	+0.7
1,543,596	+		LRK55_RS07125	0.68	+0.5
1,543,596	+		LRK55_RS07125	0.68	-1.8
1,543,596	+		LRK55_RS07125	0.68	-0.5
1,543,596	+		LRK55_RS07125	0.68	+1.2
1,543,597	-		LRK55_RS07125	0.68	-2.8
1,543,597	-		LRK55_RS07125	0.68	+0.5
1,543,597	-		LRK55_RS07125	0.68	-0.8
1,543,597	-		LRK55_RS07125	0.68	+2.8
1,543,597	-		LRK55_RS07125	0.68	-2.0
1,543,597	-		LRK55_RS07125	0.68	-1.1
1,543,597	-		LRK55_RS07125	0.68	-1.6
1,543,597	-		LRK55_RS07125	0.68	+0.1
1,543,597	-		LRK55_RS07125	0.68	-0.2
1,543,597	-		LRK55_RS07125	0.68	-1.4
1,543,597	-		LRK55_RS07125	0.68	-0.2
1,543,597	-		LRK55_RS07125	0.68	-0.3
1,543,597	-		LRK55_RS07125	0.68	+0.3
1,543,620	+		LRK55_RS07125	0.69	-2.7
1,543,620	+		LRK55_RS07125	0.69	+0.7
1,543,620	+		LRK55_RS07125	0.69	+0.9
1,543,621	-		LRK55_RS07125	0.69	-0.8
1,543,621	-		LRK55_RS07125	0.69	+2.2
1,543,621	-		LRK55_RS07125	0.69	-0.5
1,543,621	-		LRK55_RS07125	0.69	-0.8
1,543,873	+		LRK55_RS07125	0.81	-0.3
1,543,873	+		LRK55_RS07125	0.81	-3.3
1,543,975	+		LRK55_RS07125	0.86	-0.6
1,543,975	+		LRK55_RS07125	0.86	+1.4
1,543,976	-		LRK55_RS07125	0.86	-0.7
1,543,992	+		LRK55_RS07125	0.87	+0.4
1,543,993	-		LRK55_RS07125	0.87	-1.7
1,543,993	-		LRK55_RS07125	0.87	-1.8
1,543,993	-		LRK55_RS07125	0.87	-0.1
1,543,993	-		LRK55_RS07125	0.87	-0.0
1,543,993	-		LRK55_RS07125	0.87	+0.9
1,544,378	+				+0.7
1,544,504	-		LRK55_RS07130	0.15	-2.7
1,544,506	+		LRK55_RS07130	0.15	+0.2
1,544,506	+		LRK55_RS07130	0.15	+0.2
1,544,506	+		LRK55_RS07130	0.15	-0.9
1,544,506	+		LRK55_RS07130	0.15	-2.1
1,544,507	-		LRK55_RS07130	0.15	+0.8
1,544,554	+		LRK55_RS07130	0.19	-0.5
1,544,555	-		LRK55_RS07130	0.19	-1.3
1,544,579	+		LRK55_RS07130	0.21	+0.2
1,544,579	+		LRK55_RS07130	0.21	+0.0
1,544,581	+		LRK55_RS07130	0.21	-0.0
1,544,581	+		LRK55_RS07130	0.21	+0.6
1,544,581	+		LRK55_RS07130	0.21	-0.4
1,544,581	+		LRK55_RS07130	0.21	-2.7
1,544,582	-		LRK55_RS07130	0.21	-0.1
1,544,582	-		LRK55_RS07130	0.21	-1.4
1,544,600	-		LRK55_RS07130	0.22	-0.6
1,544,694	+		LRK55_RS07130	0.30	+0.8
1,544,694	+		LRK55_RS07130	0.30	+0.3
1,544,694	+		LRK55_RS07130	0.30	-2.2
1,544,695	-		LRK55_RS07130	0.30	-1.5
1,544,695	-		LRK55_RS07130	0.30	-2.3
1,544,695	-		LRK55_RS07130	0.30	-0.2
1,544,695	-		LRK55_RS07130	0.30	-1.0
1,544,791	+		LRK55_RS07130	0.38	+0.5
1,544,791	+		LRK55_RS07130	0.38	+0.9
1,544,792	-		LRK55_RS07130	0.38	+0.5
1,544,800	+		LRK55_RS07130	0.38	+1.5
1,544,800	+		LRK55_RS07130	0.38	-2.3
1,544,800	+		LRK55_RS07130	0.38	-0.4
1,544,801	-		LRK55_RS07130	0.39	-0.7
1,544,801	-		LRK55_RS07130	0.39	-1.1
1,544,917	+		LRK55_RS07130	0.48	-1.3
1,544,917	+		LRK55_RS07130	0.48	-0.1
1,544,917	+		LRK55_RS07130	0.48	-0.6
1,544,917	+		LRK55_RS07130	0.48	-2.6
1,544,917	+		LRK55_RS07130	0.48	-0.4
1,544,918	-		LRK55_RS07130	0.48	-1.8
1,544,918	-		LRK55_RS07130	0.48	+0.7
1,544,918	-		LRK55_RS07130	0.48	-2.7
1,544,950	+		LRK55_RS07130	0.50	+1.6
1,544,950	+		LRK55_RS07130	0.50	-0.4
1,544,950	+		LRK55_RS07130	0.50	-0.2
1,544,951	-		LRK55_RS07130	0.51	-3.6
1,544,951	-		LRK55_RS07130	0.51	-0.3
1,544,951	-		LRK55_RS07130	0.51	+0.8
1,544,981	+		LRK55_RS07130	0.53	-2.2
1,544,981	+		LRK55_RS07130	0.53	+0.8
1,544,992	+		LRK55_RS07130	0.54	+0.2
1,544,992	+		LRK55_RS07130	0.54	+0.2
1,544,993	-		LRK55_RS07130	0.54	-0.1
1,544,993	-		LRK55_RS07130	0.54	+0.3
1,545,001	+		LRK55_RS07130	0.55	-0.8
1,545,001	+		LRK55_RS07130	0.55	-0.2
1,545,001	+		LRK55_RS07130	0.55	+0.1
1,545,001	+		LRK55_RS07130	0.55	+0.4
1,545,001	+		LRK55_RS07130	0.55	-3.3
1,545,001	+		LRK55_RS07130	0.55	+0.9
1,545,001	+		LRK55_RS07130	0.55	-0.4
1,545,001	+		LRK55_RS07130	0.55	-0.5
1,545,001	+		LRK55_RS07130	0.55	+0.2
1,545,001	+		LRK55_RS07130	0.55	-0.2
1,545,001	+		LRK55_RS07130	0.55	-2.0
1,545,001	+		LRK55_RS07130	0.55	-0.7
1,545,001	+		LRK55_RS07130	0.55	-0.5
1,545,002	-		LRK55_RS07130	0.55	-0.4
1,545,002	-		LRK55_RS07130	0.55	-0.2
1,545,002	-		LRK55_RS07130	0.55	-3.0
1,545,002	-		LRK55_RS07130	0.55	-0.3
1,545,002	-		LRK55_RS07130	0.55	-1.5
1,545,002	-		LRK55_RS07130	0.55	-0.1
1,545,002	-		LRK55_RS07130	0.55	-3.2
1,545,002	-		LRK55_RS07130	0.55	+1.5
1,545,073	+		LRK55_RS07130	0.60	-0.1
1,545,073	+		LRK55_RS07130	0.60	-0.3
1,545,073	+		LRK55_RS07130	0.60	-0.1
1,545,073	+		LRK55_RS07130	0.60	+0.8
1,545,073	+		LRK55_RS07130	0.60	-0.8
1,545,074	-		LRK55_RS07130	0.60	-0.1
1,545,074	-		LRK55_RS07130	0.60	-0.7
1,545,074	-		LRK55_RS07130	0.60	-0.7
1,545,077	-		LRK55_RS07130	0.61	-3.4
1,545,094	-		LRK55_RS07130	0.62	-3.0
1,545,137	-		LRK55_RS07130	0.65	-0.2
1,545,142	+		LRK55_RS07130	0.66	-0.3
1,545,143	-		LRK55_RS07130	0.66	+0.2
1,545,143	-		LRK55_RS07130	0.66	-0.2
1,545,143	-		LRK55_RS07130	0.66	-0.8
1,545,143	-		LRK55_RS07130	0.66	-2.2
1,545,174	-		LRK55_RS07130	0.68	+1.2
1,545,182	-		LRK55_RS07130	0.69	+0.2
1,545,184	+		LRK55_RS07130	0.69	+4.0
1,545,248	+		LRK55_RS07130	0.74	-1.0