Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01260

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01255 and LRK55_RS01260 are separated by 165 nucleotidesLRK55_RS01260 and LRK55_RS01265 overlap by 4 nucleotidesLRK55_RS01265 and LRK55_RS01270 are separated by 31 nucleotidesLRK55_RS01270 and LRK55_RS01275 overlap by 4 nucleotides LRK55_RS01255: LRK55_RS01255 - oligopeptide:H+ symporter, at 274,370 to 275,923 _RS01255 LRK55_RS01260: LRK55_RS01260 - ribonuclease domain-containing protein, at 276,089 to 276,523 _RS01260 LRK55_RS01265: LRK55_RS01265 - barstar family protein, at 276,520 to 276,963 _RS01265 LRK55_RS01270: LRK55_RS01270 - RNA-binding S4 domain-containing protein, at 276,995 to 277,222 _RS01270 LRK55_RS01275: LRK55_RS01275 - arylamine N-acetyltransferase, at 277,219 to 278,034 _RS01275 Position (kb) 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 275.313 kb on + strand, within LRK55_RS01255at 275.313 kb on + strand, within LRK55_RS01255at 275.314 kb on - strand, within LRK55_RS01255at 275.314 kb on - strand, within LRK55_RS01255at 275.458 kb on - strand, within LRK55_RS01255at 275.634 kb on + strand, within LRK55_RS01255at 275.634 kb on + strand, within LRK55_RS01255at 275.634 kb on + strand, within LRK55_RS01255at 275.634 kb on + strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.635 kb on - strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.664 kb on + strand, within LRK55_RS01255at 275.665 kb on - strand, within LRK55_RS01255at 275.665 kb on - strand, within LRK55_RS01255at 275.665 kb on - strand, within LRK55_RS01255at 275.665 kb on - strand, within LRK55_RS01255at 275.665 kb on - strand, within LRK55_RS01255at 275.677 kb on - strand, within LRK55_RS01255at 275.715 kb on + strand, within LRK55_RS01255at 275.715 kb on + strand, within LRK55_RS01255at 275.715 kb on + strand, within LRK55_RS01255at 275.716 kb on - strand, within LRK55_RS01255at 275.716 kb on - strand, within LRK55_RS01255at 275.716 kb on - strand, within LRK55_RS01255at 275.716 kb on - strand, within LRK55_RS01255at 275.716 kb on - strand, within LRK55_RS01255at 275.782 kb on - strandat 275.782 kb on - strandat 275.832 kb on + strandat 275.832 kb on + strandat 275.871 kb on + strandat 275.871 kb on + strandat 275.871 kb on + strandat 275.871 kb on + strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.872 kb on - strandat 275.927 kb on + strandat 275.927 kb on + strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.928 kb on - strandat 275.989 kb on + strandat 275.989 kb on + strandat 275.990 kb on - strandat 275.990 kb on - strandat 276.054 kb on + strandat 276.054 kb on + strandat 276.054 kb on + strandat 276.055 kb on - strandat 276.055 kb on - strandat 276.055 kb on - strandat 276.055 kb on - strandat 276.055 kb on - strandat 276.249 kb on + strand, within LRK55_RS01260at 276.249 kb on + strand, within LRK55_RS01260at 276.249 kb on + strand, within LRK55_RS01260at 276.249 kb on + strand, within LRK55_RS01260at 276.347 kb on + strand, within LRK55_RS01260at 276.347 kb on + strand, within LRK55_RS01260at 276.348 kb on - strand, within LRK55_RS01260at 276.348 kb on - strand, within LRK55_RS01260at 276.348 kb on - strand, within LRK55_RS01260at 276.348 kb on - strand, within LRK55_RS01260at 276.348 kb on - strand, within LRK55_RS01260at 276.381 kb on - strand, within LRK55_RS01260at 276.381 kb on - strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.383 kb on + strand, within LRK55_RS01260at 276.384 kb on - strand, within LRK55_RS01260at 276.384 kb on - strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.392 kb on + strand, within LRK55_RS01260at 276.393 kb on - strand, within LRK55_RS01260at 276.393 kb on - strand, within LRK55_RS01260at 276.393 kb on - strand, within LRK55_RS01260at 276.393 kb on - strand, within LRK55_RS01260at 276.470 kb on + strand, within LRK55_RS01260at 276.470 kb on + strand, within LRK55_RS01260at 276.471 kb on - strand, within LRK55_RS01260at 276.471 kb on - strand, within LRK55_RS01260at 276.471 kb on - strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.473 kb on + strand, within LRK55_RS01260at 276.474 kb on - strand, within LRK55_RS01260at 276.474 kb on - strand, within LRK55_RS01260at 276.474 kb on - strand, within LRK55_RS01260at 276.474 kb on - strand, within LRK55_RS01260at 276.474 kb on - strand, within LRK55_RS01260at 276.474 kb on - strand, within LRK55_RS01260at 276.574 kb on + strand, within LRK55_RS01265at 276.574 kb on + strand, within LRK55_RS01265at 276.574 kb on + strand, within LRK55_RS01265at 276.574 kb on + strand, within LRK55_RS01265at 276.574 kb on + strand, within LRK55_RS01265at 276.574 kb on + strand, within LRK55_RS01265at 276.574 kb on + strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.575 kb on - strand, within LRK55_RS01265at 276.787 kb on + strand, within LRK55_RS01265at 276.787 kb on + strand, within LRK55_RS01265at 276.787 kb on + strand, within LRK55_RS01265at 276.787 kb on + strand, within LRK55_RS01265at 276.788 kb on - strand, within LRK55_RS01265at 276.788 kb on - strand, within LRK55_RS01265at 276.788 kb on - strand, within LRK55_RS01265at 276.788 kb on - strand, within LRK55_RS01265at 277.028 kb on + strand, within LRK55_RS01270at 277.028 kb on + strand, within LRK55_RS01270at 277.029 kb on - strand, within LRK55_RS01270at 277.220 kb on + strandat 277.457 kb on + strand, within LRK55_RS01275at 277.457 kb on + strand, within LRK55_RS01275at 277.457 kb on + strand, within LRK55_RS01275at 277.457 kb on + strand, within LRK55_RS01275at 277.457 kb on + strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.458 kb on - strand, within LRK55_RS01275at 277.475 kb on + strand, within LRK55_RS01275at 277.475 kb on + strand, within LRK55_RS01275at 277.476 kb on - strand, within LRK55_RS01275at 277.476 kb on - strand, within LRK55_RS01275at 277.476 kb on - strand, within LRK55_RS01275at 277.512 kb on - strand, within LRK55_RS01275

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
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275,313 + LRK55_RS01255 0.61 -0.6
275,313 + LRK55_RS01255 0.61 -0.3
275,314 - LRK55_RS01255 0.61 -0.6
275,314 - LRK55_RS01255 0.61 -2.7
275,458 - LRK55_RS01255 0.70 +0.6
275,634 + LRK55_RS01255 0.81 -1.2
275,634 + LRK55_RS01255 0.81 -0.1
275,634 + LRK55_RS01255 0.81 +0.1
275,634 + LRK55_RS01255 0.81 +0.9
275,635 - LRK55_RS01255 0.81 -1.7
275,635 - LRK55_RS01255 0.81 +0.6
275,635 - LRK55_RS01255 0.81 -0.9
275,635 - LRK55_RS01255 0.81 -2.7
275,635 - LRK55_RS01255 0.81 -1.3
275,635 - LRK55_RS01255 0.81 -3.2
275,635 - LRK55_RS01255 0.81 -0.4
275,664 + LRK55_RS01255 0.83 -2.5
275,664 + LRK55_RS01255 0.83 -0.1
275,664 + LRK55_RS01255 0.83 -1.1
275,664 + LRK55_RS01255 0.83 +1.1
275,664 + LRK55_RS01255 0.83 -0.4
275,664 + LRK55_RS01255 0.83 -0.1
275,664 + LRK55_RS01255 0.83 -0.7
275,665 - LRK55_RS01255 0.83 -0.1
275,665 - LRK55_RS01255 0.83 -1.2
275,665 - LRK55_RS01255 0.83 +0.3
275,665 - LRK55_RS01255 0.83 -1.7
275,665 - LRK55_RS01255 0.83 -0.8
275,677 - LRK55_RS01255 0.84 +0.5
275,715 + LRK55_RS01255 0.87 +0.3
275,715 + LRK55_RS01255 0.87 -1.6
275,715 + LRK55_RS01255 0.87 -0.1
275,716 - LRK55_RS01255 0.87 -0.1
275,716 - LRK55_RS01255 0.87 -1.1
275,716 - LRK55_RS01255 0.87 -0.1
275,716 - LRK55_RS01255 0.87 -0.0
275,716 - LRK55_RS01255 0.87 +0.4
275,782 - -0.1
275,782 - -2.1
275,832 + +2.2
275,832 + +0.9
275,871 + -0.1
275,871 + +1.0
275,871 + -0.1
275,871 + -1.7
275,872 - -1.4
275,872 - -1.1
275,872 - -0.8
275,872 - +2.7
275,872 - +0.9
275,872 - -0.9
275,872 - -1.3
275,872 - -1.3
275,872 - -0.7
275,927 + -1.9
275,927 + +1.4
275,928 - +0.8
275,928 - -0.1
275,928 - +0.1
275,928 - -1.8
275,928 - -0.5
275,928 - +0.7
275,928 - +1.4
275,928 - -0.0
275,989 + -0.7
275,989 + +1.0
275,990 - +0.8
275,990 - -0.1
276,054 + +0.4
276,054 + -2.3
276,054 + -1.9
276,055 - +2.1
276,055 - -1.1
276,055 - +0.1
276,055 - +0.0
276,055 - -1.4
276,249 + LRK55_RS01260 0.37 -3.2
276,249 + LRK55_RS01260 0.37 -0.3
276,249 + LRK55_RS01260 0.37 -0.5
276,249 + LRK55_RS01260 0.37 -2.5
276,347 + LRK55_RS01260 0.59 +1.5
276,347 + LRK55_RS01260 0.59 -0.0
276,348 - LRK55_RS01260 0.60 +0.0
276,348 - LRK55_RS01260 0.60 +0.5
276,348 - LRK55_RS01260 0.60 +0.2
276,348 - LRK55_RS01260 0.60 +1.3
276,348 - LRK55_RS01260 0.60 -1.4
276,381 - LRK55_RS01260 0.67 +1.1
276,381 - LRK55_RS01260 0.67 -0.5
276,383 + LRK55_RS01260 0.68 +2.4
276,383 + LRK55_RS01260 0.68 -0.6
276,383 + LRK55_RS01260 0.68 +0.9
276,383 + LRK55_RS01260 0.68 -1.6
276,383 + LRK55_RS01260 0.68 -0.2
276,383 + LRK55_RS01260 0.68 +1.4
276,383 + LRK55_RS01260 0.68 -0.9
276,384 - LRK55_RS01260 0.68 -0.9
276,384 - LRK55_RS01260 0.68 +1.0
276,392 + LRK55_RS01260 0.70 +0.4
276,392 + LRK55_RS01260 0.70 -0.1
276,392 + LRK55_RS01260 0.70 -0.5
276,392 + LRK55_RS01260 0.70 -1.7
276,392 + LRK55_RS01260 0.70 +0.7
276,392 + LRK55_RS01260 0.70 -0.7
276,392 + LRK55_RS01260 0.70 +0.5
276,393 - LRK55_RS01260 0.70 -0.1
276,393 - LRK55_RS01260 0.70 +0.6
276,393 - LRK55_RS01260 0.70 -2.8
276,393 - LRK55_RS01260 0.70 +0.0
276,470 + LRK55_RS01260 0.88 +1.5
276,470 + LRK55_RS01260 0.88 +2.6
276,471 - LRK55_RS01260 0.88 +0.5
276,471 - LRK55_RS01260 0.88 -0.1
276,471 - LRK55_RS01260 0.88 -1.7
276,473 + LRK55_RS01260 0.88 -1.9
276,473 + LRK55_RS01260 0.88 +0.4
276,473 + LRK55_RS01260 0.88 +0.5
276,473 + LRK55_RS01260 0.88 -0.1
276,473 + LRK55_RS01260 0.88 -1.7
276,473 + LRK55_RS01260 0.88 -2.1
276,473 + LRK55_RS01260 0.88 +1.0
276,474 - LRK55_RS01260 0.89 +2.1
276,474 - LRK55_RS01260 0.89 +1.8
276,474 - LRK55_RS01260 0.89 -0.0
276,474 - LRK55_RS01260 0.89 +0.7
276,474 - LRK55_RS01260 0.89 +0.4
276,474 - LRK55_RS01260 0.89 +0.4
276,574 + LRK55_RS01265 0.12 +1.2
276,574 + LRK55_RS01265 0.12 -0.6
276,574 + LRK55_RS01265 0.12 -0.7
276,574 + LRK55_RS01265 0.12 -1.7
276,574 + LRK55_RS01265 0.12 +1.3
276,574 + LRK55_RS01265 0.12 -1.6
276,574 + LRK55_RS01265 0.12 -1.3
276,575 - LRK55_RS01265 0.12 -0.7
276,575 - LRK55_RS01265 0.12 -2.5
276,575 - LRK55_RS01265 0.12 -3.1
276,575 - LRK55_RS01265 0.12 -2.1
276,575 - LRK55_RS01265 0.12 +0.1
276,575 - LRK55_RS01265 0.12 -0.5
276,575 - LRK55_RS01265 0.12 -1.9
276,575 - LRK55_RS01265 0.12 +0.1
276,575 - LRK55_RS01265 0.12 +0.7
276,575 - LRK55_RS01265 0.12 -2.3
276,575 - LRK55_RS01265 0.12 -1.7
276,575 - LRK55_RS01265 0.12 -0.4
276,787 + LRK55_RS01265 0.60 -1.0
276,787 + LRK55_RS01265 0.60 +0.8
276,787 + LRK55_RS01265 0.60 +0.7
276,787 + LRK55_RS01265 0.60 -0.1
276,788 - LRK55_RS01265 0.60 -1.1
276,788 - LRK55_RS01265 0.60 -0.9
276,788 - LRK55_RS01265 0.60 +0.7
276,788 - LRK55_RS01265 0.60 +0.3
277,028 + LRK55_RS01270 0.14 -2.4
277,028 + LRK55_RS01270 0.14 +0.3
277,029 - LRK55_RS01270 0.15 +0.0
277,220 + +0.3
277,457 + LRK55_RS01275 0.29 -1.3
277,457 + LRK55_RS01275 0.29 -0.9
277,457 + LRK55_RS01275 0.29 -2.5
277,457 + LRK55_RS01275 0.29 -0.2
277,457 + LRK55_RS01275 0.29 +0.2
277,458 - LRK55_RS01275 0.29 +1.3
277,458 - LRK55_RS01275 0.29 -2.5
277,458 - LRK55_RS01275 0.29 +1.6
277,458 - LRK55_RS01275 0.29 -2.5
277,458 - LRK55_RS01275 0.29 -0.4
277,458 - LRK55_RS01275 0.29 -0.7
277,458 - LRK55_RS01275 0.29 -1.0
277,458 - LRK55_RS01275 0.29 -1.7
277,458 - LRK55_RS01275 0.29 -0.1
277,458 - LRK55_RS01275 0.29 +0.6
277,475 + LRK55_RS01275 0.31 -0.3
277,475 + LRK55_RS01275 0.31 -1.9
277,476 - LRK55_RS01275 0.31 +0.2
277,476 - LRK55_RS01275 0.31 -1.1
277,476 - LRK55_RS01275 0.31 -2.1
277,512 - LRK55_RS01275 0.36 -3.3

Or see this region's nucleotide sequence