Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01090

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01085 and LRK55_RS01090 are separated by 108 nucleotidesLRK55_RS01090 and LRK55_RS01095 are separated by 98 nucleotides LRK55_RS01085: LRK55_RS01085 - zinc-dependent alcohol dehydrogenase family protein, at 234,194 to 235,177 _RS01085 LRK55_RS01090: LRK55_RS01090 - alpha/beta fold hydrolase, at 235,286 to 236,650 _RS01090 LRK55_RS01095: LRK55_RS01095 - erythromycin esterase family protein, at 236,749 to 238,080 _RS01095 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 234.482 kb on + strand, within LRK55_RS01085at 234.684 kb on + strand, within LRK55_RS01085at 234.684 kb on + strand, within LRK55_RS01085at 234.685 kb on - strand, within LRK55_RS01085at 234.685 kb on - strand, within LRK55_RS01085at 234.685 kb on - strand, within LRK55_RS01085at 234.685 kb on - strand, within LRK55_RS01085at 234.802 kb on - strand, within LRK55_RS01085at 234.802 kb on - strand, within LRK55_RS01085at 234.849 kb on + strand, within LRK55_RS01085at 234.868 kb on + strand, within LRK55_RS01085at 235.172 kb on + strandat 235.172 kb on + strandat 235.172 kb on + strandat 235.172 kb on + strandat 235.172 kb on + strandat 235.173 kb on - strandat 235.173 kb on - strandat 235.173 kb on - strandat 235.529 kb on + strand, within LRK55_RS01090at 235.530 kb on - strand, within LRK55_RS01090at 235.769 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.782 kb on + strand, within LRK55_RS01090at 235.897 kb on + strand, within LRK55_RS01090at 235.898 kb on - strand, within LRK55_RS01090at 236.001 kb on + strand, within LRK55_RS01090at 236.001 kb on + strand, within LRK55_RS01090at 236.001 kb on + strand, within LRK55_RS01090at 236.002 kb on - strand, within LRK55_RS01090at 236.002 kb on - strand, within LRK55_RS01090at 236.002 kb on - strand, within LRK55_RS01090at 236.002 kb on - strand, within LRK55_RS01090at 236.297 kb on - strand, within LRK55_RS01090at 236.298 kb on + strand, within LRK55_RS01090at 236.298 kb on + strand, within LRK55_RS01090at 236.298 kb on + strand, within LRK55_RS01090at 236.298 kb on + strand, within LRK55_RS01090at 236.299 kb on - strand, within LRK55_RS01090at 236.299 kb on - strand, within LRK55_RS01090at 236.299 kb on - strand, within LRK55_RS01090at 236.299 kb on - strand, within LRK55_RS01090at 236.299 kb on - strand, within LRK55_RS01090at 236.328 kb on + strand, within LRK55_RS01090at 236.328 kb on + strand, within LRK55_RS01090at 236.328 kb on + strand, within LRK55_RS01090at 236.328 kb on + strand, within LRK55_RS01090at 236.329 kb on - strand, within LRK55_RS01090at 236.638 kb on + strandat 236.638 kb on + strandat 236.638 kb on + strandat 236.638 kb on + strandat 236.638 kb on + strandat 236.638 kb on + strandat 236.639 kb on - strandat 236.639 kb on - strandat 236.639 kb on - strandat 236.639 kb on - strandat 236.639 kb on - strandat 236.736 kb on + strandat 236.736 kb on + strandat 236.736 kb on + strandat 236.736 kb on + strandat 236.736 kb on + strandat 236.737 kb on - strandat 236.737 kb on - strandat 236.737 kb on - strandat 236.737 kb on - strandat 236.737 kb on - strandat 236.825 kb on - strandat 236.903 kb on - strand, within LRK55_RS01095at 236.989 kb on + strand, within LRK55_RS01095at 236.990 kb on - strand, within LRK55_RS01095at 236.990 kb on - strand, within LRK55_RS01095at 237.160 kb on + strand, within LRK55_RS01095at 237.160 kb on + strand, within LRK55_RS01095at 237.160 kb on + strand, within LRK55_RS01095at 237.161 kb on - strand, within LRK55_RS01095at 237.161 kb on - strand, within LRK55_RS01095at 237.175 kb on + strand, within LRK55_RS01095at 237.176 kb on - strand, within LRK55_RS01095at 237.176 kb on - strand, within LRK55_RS01095at 237.176 kb on - strand, within LRK55_RS01095at 237.212 kb on - strand, within LRK55_RS01095at 237.259 kb on + strand, within LRK55_RS01095at 237.259 kb on + strand, within LRK55_RS01095at 237.259 kb on + strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.260 kb on - strand, within LRK55_RS01095at 237.278 kb on + strand, within LRK55_RS01095at 237.278 kb on + strand, within LRK55_RS01095at 237.278 kb on + strand, within LRK55_RS01095at 237.278 kb on + strand, within LRK55_RS01095at 237.279 kb on - strand, within LRK55_RS01095at 237.295 kb on + strand, within LRK55_RS01095at 237.295 kb on + strand, within LRK55_RS01095at 237.295 kb on + strand, within LRK55_RS01095at 237.295 kb on + strand, within LRK55_RS01095at 237.295 kb on + strand, within LRK55_RS01095at 237.295 kb on + strand, within LRK55_RS01095at 237.296 kb on - strand, within LRK55_RS01095at 237.296 kb on - strand, within LRK55_RS01095at 237.296 kb on - strand, within LRK55_RS01095at 237.296 kb on - strand, within LRK55_RS01095at 237.386 kb on - strand, within LRK55_RS01095at 237.469 kb on + strand, within LRK55_RS01095at 237.469 kb on + strand, within LRK55_RS01095at 237.469 kb on + strand, within LRK55_RS01095at 237.469 kb on + strand, within LRK55_RS01095at 237.469 kb on + strand, within LRK55_RS01095at 237.470 kb on - strand, within LRK55_RS01095at 237.472 kb on + strand, within LRK55_RS01095at 237.472 kb on + strand, within LRK55_RS01095at 237.472 kb on + strand, within LRK55_RS01095at 237.473 kb on - strand, within LRK55_RS01095at 237.530 kb on + strand, within LRK55_RS01095at 237.530 kb on + strand, within LRK55_RS01095at 237.530 kb on + strand, within LRK55_RS01095at 237.530 kb on + strand, within LRK55_RS01095at 237.530 kb on + strand, within LRK55_RS01095at 237.530 kb on + strand, within LRK55_RS01095at 237.531 kb on - strand, within LRK55_RS01095at 237.531 kb on - strand, within LRK55_RS01095

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
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234,482 + LRK55_RS01085 0.29 +0.8
234,684 + LRK55_RS01085 0.50 +0.8
234,684 + LRK55_RS01085 0.50 -1.2
234,685 - LRK55_RS01085 0.50 -0.6
234,685 - LRK55_RS01085 0.50 +0.8
234,685 - LRK55_RS01085 0.50 -0.7
234,685 - LRK55_RS01085 0.50 -2.2
234,802 - LRK55_RS01085 0.62 -0.4
234,802 - LRK55_RS01085 0.62 +1.2
234,849 + LRK55_RS01085 0.67 +1.6
234,868 + LRK55_RS01085 0.68 -1.9
235,172 + +1.6
235,172 + +1.0
235,172 + -1.9
235,172 + +1.8
235,172 + +0.9
235,173 - +1.3
235,173 - -2.3
235,173 - -1.5
235,529 + LRK55_RS01090 0.18 -0.7
235,530 - LRK55_RS01090 0.18 +0.8
235,769 + LRK55_RS01090 0.35 -0.6
235,782 + LRK55_RS01090 0.36 -0.1
235,782 + LRK55_RS01090 0.36 +2.4
235,782 + LRK55_RS01090 0.36 +0.6
235,782 + LRK55_RS01090 0.36 -1.2
235,782 + LRK55_RS01090 0.36 +0.2
235,782 + LRK55_RS01090 0.36 -0.2
235,782 + LRK55_RS01090 0.36 -1.1
235,782 + LRK55_RS01090 0.36 -0.3
235,897 + LRK55_RS01090 0.45 -1.1
235,898 - LRK55_RS01090 0.45 -2.2
236,001 + LRK55_RS01090 0.52 -0.7
236,001 + LRK55_RS01090 0.52 -0.4
236,001 + LRK55_RS01090 0.52 +0.3
236,002 - LRK55_RS01090 0.52 +0.6
236,002 - LRK55_RS01090 0.52 -1.2
236,002 - LRK55_RS01090 0.52 -0.7
236,002 - LRK55_RS01090 0.52 +0.6
236,297 - LRK55_RS01090 0.74 +0.2
236,298 + LRK55_RS01090 0.74 -3.1
236,298 + LRK55_RS01090 0.74 -0.7
236,298 + LRK55_RS01090 0.74 +0.5
236,298 + LRK55_RS01090 0.74 -0.6
236,299 - LRK55_RS01090 0.74 +0.2
236,299 - LRK55_RS01090 0.74 +0.7
236,299 - LRK55_RS01090 0.74 +0.6
236,299 - LRK55_RS01090 0.74 -1.1
236,299 - LRK55_RS01090 0.74 +0.2
236,328 + LRK55_RS01090 0.76 -2.1
236,328 + LRK55_RS01090 0.76 -1.0
236,328 + LRK55_RS01090 0.76 -0.1
236,328 + LRK55_RS01090 0.76 -0.1
236,329 - LRK55_RS01090 0.76 +0.3
236,638 + -1.7
236,638 + -0.5
236,638 + +0.6
236,638 + +1.5
236,638 + +0.8
236,638 + -0.1
236,639 - -1.1
236,639 - -3.1
236,639 - -0.7
236,639 - +0.3
236,639 - -1.9
236,736 + +0.1
236,736 + +0.6
236,736 + -0.1
236,736 + +0.6
236,736 + +1.1
236,737 - -0.1
236,737 - -3.1
236,737 - +0.4
236,737 - +0.7
236,737 - -0.2
236,825 - +0.9
236,903 - LRK55_RS01095 0.12 +0.6
236,989 + LRK55_RS01095 0.18 -1.1
236,990 - LRK55_RS01095 0.18 -2.1
236,990 - LRK55_RS01095 0.18 +1.5
237,160 + LRK55_RS01095 0.31 -0.5
237,160 + LRK55_RS01095 0.31 -2.7
237,160 + LRK55_RS01095 0.31 -0.7
237,161 - LRK55_RS01095 0.31 +0.4
237,161 - LRK55_RS01095 0.31 +1.6
237,175 + LRK55_RS01095 0.32 -2.1
237,176 - LRK55_RS01095 0.32 +0.5
237,176 - LRK55_RS01095 0.32 -0.2
237,176 - LRK55_RS01095 0.32 -2.1
237,212 - LRK55_RS01095 0.35 +0.6
237,259 + LRK55_RS01095 0.38 -2.0
237,259 + LRK55_RS01095 0.38 -0.7
237,259 + LRK55_RS01095 0.38 -1.0
237,260 - LRK55_RS01095 0.38 +0.1
237,260 - LRK55_RS01095 0.38 -1.5
237,260 - LRK55_RS01095 0.38 -0.7
237,260 - LRK55_RS01095 0.38 +0.5
237,260 - LRK55_RS01095 0.38 +0.3
237,260 - LRK55_RS01095 0.38 +1.5
237,260 - LRK55_RS01095 0.38 -0.1
237,278 + LRK55_RS01095 0.40 +1.3
237,278 + LRK55_RS01095 0.40 +1.4
237,278 + LRK55_RS01095 0.40 +0.7
237,278 + LRK55_RS01095 0.40 +0.5
237,279 - LRK55_RS01095 0.40 -0.9
237,295 + LRK55_RS01095 0.41 +0.1
237,295 + LRK55_RS01095 0.41 -3.4
237,295 + LRK55_RS01095 0.41 +0.2
237,295 + LRK55_RS01095 0.41 +0.3
237,295 + LRK55_RS01095 0.41 +0.4
237,295 + LRK55_RS01095 0.41 +0.2
237,296 - LRK55_RS01095 0.41 +0.3
237,296 - LRK55_RS01095 0.41 -0.6
237,296 - LRK55_RS01095 0.41 -0.8
237,296 - LRK55_RS01095 0.41 +0.0
237,386 - LRK55_RS01095 0.48 -3.2
237,469 + LRK55_RS01095 0.54 -0.2
237,469 + LRK55_RS01095 0.54 -0.8
237,469 + LRK55_RS01095 0.54 +0.8
237,469 + LRK55_RS01095 0.54 +1.3
237,469 + LRK55_RS01095 0.54 -1.4
237,470 - LRK55_RS01095 0.54 -0.1
237,472 + LRK55_RS01095 0.54 -1.8
237,472 + LRK55_RS01095 0.54 -0.3
237,472 + LRK55_RS01095 0.54 -1.2
237,473 - LRK55_RS01095 0.54 +0.4
237,530 + LRK55_RS01095 0.59 +0.3
237,530 + LRK55_RS01095 0.59 -0.1
237,530 + LRK55_RS01095 0.59 -0.1
237,530 + LRK55_RS01095 0.59 -2.7
237,530 + LRK55_RS01095 0.59 -1.1
237,530 + LRK55_RS01095 0.59 +0.7
237,531 - LRK55_RS01095 0.59 -2.2
237,531 - LRK55_RS01095 0.59 -0.1

Or see this region's nucleotide sequence