Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS17745

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,852,806	+		LRK55_RS17735	0.76	-0.5
3,852,806	+		LRK55_RS17735	0.76	+0.1
3,852,806	+		LRK55_RS17735	0.76	-0.5
3,852,806	+		LRK55_RS17735	0.76	+0.1
3,852,806	+		LRK55_RS17735	0.76	+0.8
3,852,806	+		LRK55_RS17735	0.76	+0.2
3,852,807	-		LRK55_RS17735	0.76	-0.4
3,852,807	-		LRK55_RS17735	0.76	-1.2
3,852,807	-		LRK55_RS17735	0.76	+0.5
3,852,904	+				+2.4
3,852,904	+				-0.5
3,852,904	+				+1.1
3,852,904	+				-0.9
3,852,904	+				-2.9
3,852,904	+				+2.0
3,852,904	+				+0.3
3,852,905	-				-1.7
3,852,905	-				-1.0
3,852,905	-				-0.6
3,852,961	+				-0.2
3,852,961	+				+0.0
3,852,962	-				-0.3
3,852,962	-				-0.7
3,853,189	+		LRK55_RS17740	0.30	-0.4
3,853,189	+		LRK55_RS17740	0.30	-0.4
3,853,295	+		LRK55_RS17740	0.46	-2.4
3,853,295	+		LRK55_RS17740	0.46	-3.1
3,853,296	-		LRK55_RS17740	0.46	-0.2
3,853,364	+		LRK55_RS17740	0.56	-2.5
3,853,364	+		LRK55_RS17740	0.56	+0.2
3,853,364	+		LRK55_RS17740	0.56	-1.9
3,853,365	-		LRK55_RS17740	0.57	-0.7
3,853,365	-		LRK55_RS17740	0.57	-0.5
3,853,365	-		LRK55_RS17740	0.57	-0.7
3,853,434	+		LRK55_RS17740	0.67	+0.5
3,853,434	+		LRK55_RS17740	0.67	+1.1
3,853,434	+		LRK55_RS17740	0.67	-2.0
3,853,434	+		LRK55_RS17740	0.67	-1.9
3,853,434	+		LRK55_RS17740	0.67	-3.5
3,853,434	+		LRK55_RS17740	0.67	-1.7
3,853,434	+		LRK55_RS17740	0.67	-2.9
3,853,435	-		LRK55_RS17740	0.67	-1.0
3,853,435	-		LRK55_RS17740	0.67	+1.8
3,853,435	-		LRK55_RS17740	0.67	-0.2
3,853,435	-		LRK55_RS17740	0.67	-2.7
3,853,435	-		LRK55_RS17740	0.67	-0.1
3,853,435	-		LRK55_RS17740	0.67	-1.3
3,853,435	-		LRK55_RS17740	0.67	-1.8
3,853,435	-		LRK55_RS17740	0.67	-3.5
3,853,435	-		LRK55_RS17740	0.67	-2.4
3,853,435	-		LRK55_RS17740	0.67	-2.2
3,853,435	-		LRK55_RS17740	0.67	-2.5
3,853,435	-		LRK55_RS17740	0.67	-0.9
3,853,435	-		LRK55_RS17740	0.67	-2.0
3,853,538	+		LRK55_RS17740	0.83	-1.5
3,853,538	+		LRK55_RS17740	0.83	-0.8
3,853,538	+		LRK55_RS17740	0.83	-1.3
3,853,538	+		LRK55_RS17740	0.83	-1.1
3,853,538	+		LRK55_RS17740	0.83	-2.6
3,853,538	+		LRK55_RS17740	0.83	-2.4
3,853,538	+		LRK55_RS17740	0.83	-2.4
3,853,538	+		LRK55_RS17740	0.83	-1.4
3,853,539	-		LRK55_RS17740	0.83	-2.2
3,853,539	-		LRK55_RS17740	0.83	+0.9
3,853,539	-		LRK55_RS17740	0.83	-2.5
3,853,539	-		LRK55_RS17740	0.83	-0.7
3,853,539	-		LRK55_RS17740	0.83	-0.1
3,853,539	-		LRK55_RS17740	0.83	-2.7
3,853,539	-		LRK55_RS17740	0.83	-2.1
3,853,539	-		LRK55_RS17740	0.83	-2.2
3,853,539	-		LRK55_RS17740	0.83	-2.2
3,853,604	+				-0.5
3,853,605	+				-0.3
3,853,605	+				-0.4
3,853,605	+				+1.1
3,853,605	+				-1.1
3,853,605	+				-0.8
3,853,605	+				-0.6
3,853,605	+				-0.9
3,853,605	+				-1.7
3,853,605	+				-2.7
3,853,605	+				-1.3
3,853,605	+				-1.6
3,853,605	+				-1.2
3,853,605	+				-0.7
3,853,605	+				-0.8
3,853,605	+				-0.8
3,853,605	+				-0.3
3,853,605	+				-0.1
3,853,605	+				-3.5
3,853,605	+				-0.1
3,853,605	+				-1.1
3,853,605	+				-1.4
3,853,605	+				-1.4
3,853,605	+				-0.5
3,853,605	+				-1.7
3,853,605	+				-1.9
3,853,605	+				-0.7
3,853,605	+				-0.0
3,853,605	+				-2.8
3,853,605	+				-0.9
3,853,606	-				-2.5
3,853,606	-				-3.2
3,853,606	-				-3.7
3,853,606	-				-2.4
3,853,606	-				-2.4
3,853,606	-				-1.7
3,853,606	-				-0.4
3,853,606	-				-2.0
3,853,606	-				-0.1
3,853,606	-				-1.9
3,853,606	-				-0.6
3,853,606	-				-0.4
3,853,606	-				-2.1
3,853,606	-				-1.5
3,853,606	-				-2.6
3,853,606	-				+1.5
3,853,606	-				-2.2
3,853,606	-				-1.3
3,853,606	-				-2.1
3,853,606	-				-0.3
3,853,606	-				-0.4
3,853,606	-				-1.5
3,853,606	-				-0.7
3,853,606	-				-1.7
3,853,606	-				-1.7
3,853,606	-				+0.8
3,853,606	-				-1.6
3,853,606	-				-3.3
3,853,606	-				+1.9
3,853,606	-				-0.3
3,853,606	-				-1.3
3,853,606	-				-1.9
3,853,606	-				-1.9
3,853,621	+				-1.1
3,853,621	+				+1.7
3,853,622	-				-1.2
3,853,622	-				-0.8
3,853,685	-				-0.7
3,854,141	+		LRK55_RS17745	0.13	-0.7
3,854,142	-		LRK55_RS17745	0.13	+0.9
3,854,142	-		LRK55_RS17745	0.13	+0.3
3,854,186	-		LRK55_RS17745	0.14	-0.9
3,854,248	+		LRK55_RS17745	0.16	-0.8
3,854,248	+		LRK55_RS17745	0.16	+0.7
3,854,249	-		LRK55_RS17745	0.16	+0.8
3,855,323	+		LRK55_RS17745	0.50	-0.9
3,856,982	-				+0.2
3,857,089	-				-1.1
3,857,150	-				-0.3
3,857,150	-				-0.4
3,857,195	-				+1.2
3,857,195	-				+0.5
3,857,195	-				-0.5
3,857,195	-				+0.7
3,857,195	-				-0.4
3,857,213	+				-1.8
3,857,214	-				+0.0
3,857,214	-				-0.1
3,857,214	-				-1.5
3,857,214	-				-0.7
3,857,214	-				-0.8
3,857,214	-				-1.3
3,857,214	-				-2.2
3,857,271	+				-2.1
3,857,271	+				+0.1
3,857,271	+				-1.7
3,857,271	+				-0.1
3,857,271	+				+0.6
3,857,271	+				-2.2
3,857,271	+				-3.3
3,857,271	+				-0.8
3,857,271	+				+0.7
3,857,271	+				-0.9
3,857,271	+				-2.2
3,857,271	+				+0.0
3,857,272	-				-0.1
3,857,272	-				-0.1
3,857,272	-				-3.2
3,857,272	-				-1.6
3,857,272	-				-0.6
3,857,272	-				-2.7
3,857,272	-				-0.2
3,857,272	-				-0.2
3,857,272	-				-0.5
3,857,272	-				+1.3
3,857,272	-				-0.7
3,857,272	-				-0.6
3,857,272	-				-1.6
3,857,272	-				-1.0
3,857,441	-		LRK55_RS17750	0.21	+0.3
3,857,768	+		LRK55_RS17750	0.53	-0.5
3,857,768	+		LRK55_RS17750	0.53	-0.3
3,857,768	+		LRK55_RS17750	0.53	-1.3
3,857,768	+		LRK55_RS17750	0.53	-1.1
3,857,768	+		LRK55_RS17750	0.53	-0.1
3,857,768	+		LRK55_RS17750	0.53	-1.1
3,857,769	-		LRK55_RS17750	0.54	-0.5
3,857,769	-		LRK55_RS17750	0.54	-2.4
3,857,769	-		LRK55_RS17750	0.54	-1.4
3,857,769	-		LRK55_RS17750	0.54	-0.3
3,857,769	-		LRK55_RS17750	0.54	-0.7
3,857,769	-		LRK55_RS17750	0.54	-3.0
3,857,769	-		LRK55_RS17750	0.54	-0.8
3,857,769	-		LRK55_RS17750	0.54	-0.4
3,857,769	-		LRK55_RS17750	0.54	-0.5
3,857,769	-		LRK55_RS17750	0.54	+0.7