Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16100

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,514,749	+				+1.2
3,514,749	+				+0.5
3,514,749	+				+0.1
3,514,749	+				-0.3
3,514,776	+				-1.4
3,514,823	-				+0.3
3,514,874	+		LRK55_RS16095	0.14	-0.4
3,514,874	+		LRK55_RS16095	0.14	+0.3
3,514,896	+		LRK55_RS16095	0.16	+0.5
3,514,896	+		LRK55_RS16095	0.16	-0.3
3,514,896	+		LRK55_RS16095	0.16	-0.5
3,514,896	+		LRK55_RS16095	0.16	+0.5
3,514,896	+		LRK55_RS16095	0.16	-1.5
3,514,896	+		LRK55_RS16095	0.16	-0.1
3,514,897	-		LRK55_RS16095	0.16	+0.2
3,514,897	-		LRK55_RS16095	0.16	+0.7
3,514,897	-		LRK55_RS16095	0.16	-1.0
3,514,897	-		LRK55_RS16095	0.16	+0.1
3,514,897	-		LRK55_RS16095	0.16	-0.6
3,514,897	-		LRK55_RS16095	0.16	-0.3
3,514,897	-		LRK55_RS16095	0.16	-1.3
3,514,897	-		LRK55_RS16095	0.16	+0.3
3,514,897	-		LRK55_RS16095	0.16	-1.6
3,515,041	+		LRK55_RS16095	0.31	-0.3
3,515,041	+		LRK55_RS16095	0.31	+1.4
3,515,041	+		LRK55_RS16095	0.31	-0.2
3,515,041	+		LRK55_RS16095	0.31	-0.2
3,515,041	+		LRK55_RS16095	0.31	+0.6
3,515,041	+		LRK55_RS16095	0.31	+0.8
3,515,041	+		LRK55_RS16095	0.31	+0.4
3,515,042	-		LRK55_RS16095	0.32	+0.0
3,515,042	-		LRK55_RS16095	0.32	-0.5
3,515,064	+		LRK55_RS16095	0.34	-1.1
3,515,064	+		LRK55_RS16095	0.34	+1.4
3,515,064	+		LRK55_RS16095	0.34	+0.5
3,515,064	+		LRK55_RS16095	0.34	-0.4
3,515,064	+		LRK55_RS16095	0.34	-0.7
3,515,064	+		LRK55_RS16095	0.34	+0.7
3,515,064	+		LRK55_RS16095	0.34	-0.1
3,515,064	+		LRK55_RS16095	0.34	-0.1
3,515,064	+		LRK55_RS16095	0.34	-2.3
3,515,065	-		LRK55_RS16095	0.34	-0.4
3,515,065	-		LRK55_RS16095	0.34	+0.2
3,515,065	-		LRK55_RS16095	0.34	-0.1
3,515,065	-		LRK55_RS16095	0.34	+1.0
3,515,065	-		LRK55_RS16095	0.34	+0.4
3,515,183	+		LRK55_RS16095	0.46	-0.1
3,515,183	+		LRK55_RS16095	0.46	-0.1
3,515,183	+		LRK55_RS16095	0.46	+0.3
3,515,184	-		LRK55_RS16095	0.47	-0.6
3,515,184	-		LRK55_RS16095	0.47	-0.2
3,515,184	-		LRK55_RS16095	0.47	+0.0
3,515,184	-		LRK55_RS16095	0.47	-1.7
3,515,184	-		LRK55_RS16095	0.47	-0.7
3,515,184	-		LRK55_RS16095	0.47	-0.6
3,515,184	-		LRK55_RS16095	0.47	-0.2
3,515,184	-		LRK55_RS16095	0.47	+0.0
3,515,377	+		LRK55_RS16095	0.67	-0.7
3,515,377	+		LRK55_RS16095	0.67	-1.6
3,515,378	-		LRK55_RS16095	0.67	-0.7
3,515,378	-		LRK55_RS16095	0.67	-0.3
3,515,481	+		LRK55_RS16095	0.78	-0.3
3,515,482	-		LRK55_RS16095	0.78	+0.3
3,515,535	+		LRK55_RS16095	0.84	-1.9
3,515,535	+		LRK55_RS16095	0.84	-0.7
3,515,536	-		LRK55_RS16095	0.84	-1.8
3,515,536	-		LRK55_RS16095	0.84	+0.2
3,515,536	-		LRK55_RS16095	0.84	+1.1
3,515,536	-		LRK55_RS16095	0.84	+0.2
3,515,536	-		LRK55_RS16095	0.84	-0.1
3,515,536	-		LRK55_RS16095	0.84	+0.3
3,515,565	+		LRK55_RS16095	0.87	-1.7
3,515,565	+		LRK55_RS16095	0.87	-1.8
3,515,565	+		LRK55_RS16095	0.87	+0.3
3,515,565	+		LRK55_RS16095	0.87	+0.9
3,515,565	+		LRK55_RS16095	0.87	+0.2
3,515,565	+		LRK55_RS16095	0.87	+0.7
3,515,566	-		LRK55_RS16095	0.87	-0.4
3,515,566	-		LRK55_RS16095	0.87	-0.9
3,515,566	-		LRK55_RS16095	0.87	-0.2
3,515,566	-		LRK55_RS16095	0.87	+1.2
3,515,566	-		LRK55_RS16095	0.87	+0.7
3,515,566	-		LRK55_RS16095	0.87	+0.4
3,515,566	-		LRK55_RS16095	0.87	-1.0
3,515,566	-		LRK55_RS16095	0.87	+1.3
3,515,566	-		LRK55_RS16095	0.87	+1.1
3,515,566	-		LRK55_RS16095	0.87	-1.3
3,515,566	-		LRK55_RS16095	0.87	-1.1
3,515,566	-		LRK55_RS16095	0.87	-0.2
3,515,627	-				-0.1
3,515,636	+				+1.0
3,515,636	+				-0.6
3,515,684	+				+0.2
3,515,684	+				-0.5
3,515,684	+				+0.4
3,515,685	-				+0.6
3,515,708	-				-0.6
3,515,839	+		LRK55_RS16100	0.26	-0.2
3,515,840	-		LRK55_RS16100	0.26	+0.1
3,515,840	-		LRK55_RS16100	0.26	-0.4
3,515,840	-		LRK55_RS16100	0.26	-0.7
3,515,840	-		LRK55_RS16100	0.26	-0.4
3,515,840	-		LRK55_RS16100	0.26	-0.3
3,515,840	-		LRK55_RS16100	0.26	-0.5
3,515,840	-		LRK55_RS16100	0.26	+0.2
3,516,091	+				+0.1
3,516,091	+				+0.2
3,516,091	+				+1.5
3,516,091	+				+0.6
3,516,091	+				-0.9
3,516,091	+				-0.1
3,516,092	-				-0.4
3,516,092	-				+0.2
3,516,092	-				+1.3
3,516,092	-				+0.1
3,516,092	-				-2.1
3,516,092	-				+0.2
3,516,244	-				-0.0
3,516,299	+				+0.6
3,516,299	+				+0.7
3,516,300	-				+1.6
3,516,300	-				+0.2
3,516,300	-				-1.4
3,516,408	+				-0.8
3,516,408	+				+0.3
3,516,408	+				-1.2
3,516,408	+				+0.5
3,516,409	-				-0.8
3,516,409	-				+1.1
3,516,448	+		LRK55_RS16105	0.11	+0.6
3,516,448	+		LRK55_RS16105	0.11	+0.1
3,516,448	+		LRK55_RS16105	0.11	+1.2
3,516,448	+		LRK55_RS16105	0.11	+1.9
3,516,449	-		LRK55_RS16105	0.12	-1.9
3,516,456	+		LRK55_RS16105	0.13	+0.5
3,516,457	-		LRK55_RS16105	0.13	+1.7
3,516,457	-		LRK55_RS16105	0.13	-0.2
3,516,457	-		LRK55_RS16105	0.13	-0.4
3,516,457	-		LRK55_RS16105	0.13	+0.2
3,516,457	-		LRK55_RS16105	0.13	+0.3
3,516,841	+		LRK55_RS16105	0.68	+1.5
3,516,984	+		LRK55_RS16105	0.89	+0.7
3,516,984	+		LRK55_RS16105	0.89	-0.1
3,516,984	+		LRK55_RS16105	0.89	-0.5
3,516,984	+		LRK55_RS16105	0.89	-0.1
3,516,984	+		LRK55_RS16105	0.89	-0.4
3,516,984	+		LRK55_RS16105	0.89	+1.2
3,516,984	+		LRK55_RS16105	0.89	+0.4
3,516,984	+		LRK55_RS16105	0.89	-0.1
3,516,984	+		LRK55_RS16105	0.89	+0.7
3,516,984	+		LRK55_RS16105	0.89	-0.1
3,516,984	+		LRK55_RS16105	0.89	-0.2
3,516,984	+		LRK55_RS16105	0.89	-2.5
3,516,984	+		LRK55_RS16105	0.89	+0.7
3,516,984	+		LRK55_RS16105	0.89	-0.2
3,516,985	-		LRK55_RS16105	0.89	-0.8
3,516,985	-		LRK55_RS16105	0.89	-0.4
3,516,985	-		LRK55_RS16105	0.89	-0.4
3,516,985	-		LRK55_RS16105	0.89	+0.6
3,516,985	-		LRK55_RS16105	0.89	+0.3
3,516,985	-		LRK55_RS16105	0.89	+0.9
3,517,095	+				+0.6