Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS03905 and LRK55_RS03910 are separated by 23 nucleotides LRK55_RS03910 and LRK55_RS03915 are separated by 16 nucleotides LRK55_RS03915 and LRK55_RS03920 are separated by 67 nucleotides
LRK55_RS03905: LRK55_RS03905 - ADP compounds hydrolase NudE, at 826,955 to 827,512
_RS03905
LRK55_RS03910: LRK55_RS03910 - inositol monophosphatase family protein, at 827,536 to 828,312
_RS03910
LRK55_RS03915: LRK55_RS03915 - type II secretion system protein N, at 828,329 to 829,117
_RS03915
LRK55_RS03920: LRK55_RS03920 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 829,185 to 830,549
_RS03920
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.406 kb on + strand, within LRK55_RS03905 at 827.407 kb on - strand, within LRK55_RS03905 at 827.407 kb on - strand, within LRK55_RS03905 at 827.502 kb on - strand at 827.502 kb on - strand at 827.502 kb on - strand at 827.502 kb on - strand at 827.523 kb on + strand at 827.524 kb on - strand at 827.524 kb on - strand at 827.591 kb on - strand at 827.591 kb on - strand at 827.742 kb on - strand, within LRK55_RS03910 at 827.742 kb on - strand, within LRK55_RS03910 at 827.742 kb on - strand, within LRK55_RS03910 at 827.742 kb on - strand, within LRK55_RS03910 at 827.945 kb on + strand, within LRK55_RS03910 at 827.946 kb on - strand, within LRK55_RS03910 at 827.946 kb on - strand, within LRK55_RS03910 at 828.098 kb on + strand, within LRK55_RS03910 at 828.098 kb on + strand, within LRK55_RS03910 at 828.098 kb on + strand, within LRK55_RS03910 at 828.098 kb on + strand, within LRK55_RS03910 at 828.098 kb on + strand, within LRK55_RS03910 at 828.098 kb on + strand, within LRK55_RS03910 at 828.099 kb on - strand, within LRK55_RS03910 at 828.099 kb on - strand, within LRK55_RS03910 at 828.099 kb on - strand, within LRK55_RS03910 at 828.099 kb on - strand, within LRK55_RS03910 at 828.099 kb on - strand, within LRK55_RS03910 at 828.110 kb on + strand, within LRK55_RS03910 at 828.234 kb on - strand, within LRK55_RS03910 at 829.102 kb on + strand at 829.102 kb on + strand at 829.102 kb on + strand at 829.102 kb on + strand at 829.103 kb on - strand at 829.530 kb on + strand, within LRK55_RS03920 at 829.530 kb on + strand, within LRK55_RS03920 at 829.531 kb on - strand, within LRK55_RS03920 at 829.531 kb on - strand, within LRK55_RS03920 at 829.531 kb on - strand, within LRK55_RS03920 at 829.531 kb on - strand, within LRK55_RS03920 at 829.641 kb on + strand, within LRK55_RS03920 at 829.641 kb on + strand, within LRK55_RS03920 at 829.690 kb on - strand, within LRK55_RS03920 at 829.701 kb on + strand, within LRK55_RS03920 at 829.701 kb on + strand, within LRK55_RS03920 at 829.701 kb on + strand, within LRK55_RS03920 at 829.702 kb on - strand, within LRK55_RS03920 at 829.702 kb on - strand, within LRK55_RS03920 at 829.749 kb on + strand, within LRK55_RS03920 at 829.749 kb on + strand, within LRK55_RS03920 at 829.749 kb on + strand, within LRK55_RS03920 at 829.749 kb on + strand, within LRK55_RS03920 at 829.750 kb on - strand, within LRK55_RS03920 at 829.893 kb on + strand, within LRK55_RS03920 at 829.893 kb on + strand, within LRK55_RS03920 at 829.893 kb on + strand, within LRK55_RS03920 at 829.893 kb on + strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.894 kb on - strand, within LRK55_RS03920 at 829.905 kb on + strand, within LRK55_RS03920 at 830.103 kb on + strand, within LRK55_RS03920 at 830.103 kb on + strand, within LRK55_RS03920 at 830.104 kb on - strand, within LRK55_RS03920 at 830.104 kb on - strand, within LRK55_RS03920 at 830.104 kb on - strand, within LRK55_RS03920 at 830.115 kb on + strand, within LRK55_RS03920
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 827,406 + LRK55_RS03905 0.81 -0.5 827,407 - LRK55_RS03905 0.81 -0.6 827,407 - LRK55_RS03905 0.81 +1.1 827,502 - -0.8 827,502 - -2.5 827,502 - -1.2 827,502 - -0.6 827,523 + +0.2 827,524 - +0.2 827,524 - +0.9 827,591 - +0.1 827,591 - -1.7 827,742 - LRK55_RS03910 0.27 -0.7 827,742 - LRK55_RS03910 0.27 -0.4 827,742 - LRK55_RS03910 0.27 -0.2 827,742 - LRK55_RS03910 0.27 -1.3 827,945 + LRK55_RS03910 0.53 -1.5 827,946 - LRK55_RS03910 0.53 -0.6 827,946 - LRK55_RS03910 0.53 +0.8 828,098 + LRK55_RS03910 0.72 +1.3 828,098 + LRK55_RS03910 0.72 +0.8 828,098 + LRK55_RS03910 0.72 -0.6 828,098 + LRK55_RS03910 0.72 -0.2 828,098 + LRK55_RS03910 0.72 +2.8 828,098 + LRK55_RS03910 0.72 -0.6 828,099 - LRK55_RS03910 0.72 -0.5 828,099 - LRK55_RS03910 0.72 -3.3 828,099 - LRK55_RS03910 0.72 -1.6 828,099 - LRK55_RS03910 0.72 +0.3 828,099 - LRK55_RS03910 0.72 -1.1 828,110 + LRK55_RS03910 0.74 -0.7 828,234 - LRK55_RS03910 0.90 +0.7 829,102 + -2.2 829,102 + -0.7 829,102 + +0.5 829,102 + -1.2 829,103 - +0.1 829,530 + LRK55_RS03920 0.25 +1.0 829,530 + LRK55_RS03920 0.25 -0.1 829,531 - LRK55_RS03920 0.25 -0.4 829,531 - LRK55_RS03920 0.25 +0.8 829,531 - LRK55_RS03920 0.25 +0.5 829,531 - LRK55_RS03920 0.25 -0.4 829,641 + LRK55_RS03920 0.33 +1.3 829,641 + LRK55_RS03920 0.33 -0.7 829,690 - LRK55_RS03920 0.37 -0.0 829,701 + LRK55_RS03920 0.38 -1.0 829,701 + LRK55_RS03920 0.38 -0.5 829,701 + LRK55_RS03920 0.38 -0.8 829,702 - LRK55_RS03920 0.38 +0.0 829,702 - LRK55_RS03920 0.38 -0.8 829,749 + LRK55_RS03920 0.41 +0.2 829,749 + LRK55_RS03920 0.41 +1.3 829,749 + LRK55_RS03920 0.41 +0.8 829,749 + LRK55_RS03920 0.41 -2.2 829,750 - LRK55_RS03920 0.41 +0.4 829,893 + LRK55_RS03920 0.52 +0.3 829,893 + LRK55_RS03920 0.52 +0.6 829,893 + LRK55_RS03920 0.52 +0.3 829,893 + LRK55_RS03920 0.52 -0.2 829,894 - LRK55_RS03920 0.52 +0.5 829,894 - LRK55_RS03920 0.52 -2.0 829,894 - LRK55_RS03920 0.52 -1.2 829,894 - LRK55_RS03920 0.52 -0.8 829,894 - LRK55_RS03920 0.52 -0.5 829,894 - LRK55_RS03920 0.52 +0.3 829,894 - LRK55_RS03920 0.52 -1.7 829,894 - LRK55_RS03920 0.52 -0.2 829,894 - LRK55_RS03920 0.52 +0.8 829,894 - LRK55_RS03920 0.52 +1.0 829,894 - LRK55_RS03920 0.52 +0.4 829,905 + LRK55_RS03920 0.53 +0.1 830,103 + LRK55_RS03920 0.67 +0.7 830,103 + LRK55_RS03920 0.67 +0.1 830,104 - LRK55_RS03920 0.67 -2.2 830,104 - LRK55_RS03920 0.67 +0.4 830,104 - LRK55_RS03920 0.67 +1.1 830,115 + LRK55_RS03920 0.68 -1.2
Or see this region's nucleotide sequence