Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04269 and MPMX20_04270 overlap by 4 nucleotides MPMX20_04270 and MPMX20_04271 are separated by 136 nucleotides
MPMX20_04269: MPMX20_04269 - Nitrite reductase [NAD(P)H], at 4,451,142 to 4,453,685
_04269
MPMX20_04270: MPMX20_04270 - Nitrite reductase (NADH) small subunit, at 4,453,682 to 4,454,008
_04270
MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518
_04271
Position (kb)
4453
4454
4455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4452.693 kb on + strand, within MPMX20_04269 at 4452.700 kb on + strand, within MPMX20_04269 at 4452.700 kb on + strand, within MPMX20_04269 at 4452.759 kb on - strand, within MPMX20_04269 at 4452.781 kb on - strand, within MPMX20_04269 at 4452.805 kb on - strand, within MPMX20_04269 at 4452.910 kb on + strand, within MPMX20_04269 at 4452.940 kb on - strand, within MPMX20_04269 at 4452.945 kb on - strand, within MPMX20_04269 at 4453.141 kb on - strand, within MPMX20_04269 at 4453.144 kb on + strand, within MPMX20_04269 at 4453.148 kb on - strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.208 kb on + strand, within MPMX20_04269 at 4453.216 kb on - strand, within MPMX20_04269 at 4453.218 kb on - strand, within MPMX20_04269 at 4453.242 kb on + strand, within MPMX20_04269 at 4453.242 kb on + strand, within MPMX20_04269 at 4453.288 kb on + strand, within MPMX20_04269 at 4453.288 kb on + strand, within MPMX20_04269 at 4453.296 kb on - strand, within MPMX20_04269 at 4453.308 kb on + strand, within MPMX20_04269 at 4453.338 kb on + strand, within MPMX20_04269 at 4453.353 kb on - strand, within MPMX20_04269 at 4453.392 kb on - strand, within MPMX20_04269 at 4453.394 kb on + strand, within MPMX20_04269 at 4453.409 kb on + strand, within MPMX20_04269 at 4453.633 kb on - strand at 4453.692 kb on + strand at 4453.728 kb on + strand, within MPMX20_04270 at 4453.740 kb on + strand, within MPMX20_04270 at 4453.747 kb on + strand, within MPMX20_04270 at 4453.815 kb on - strand, within MPMX20_04270 at 4453.862 kb on + strand, within MPMX20_04270 at 4453.870 kb on + strand, within MPMX20_04270 at 4453.927 kb on + strand, within MPMX20_04270 at 4453.953 kb on - strand, within MPMX20_04270 at 4453.960 kb on + strand, within MPMX20_04270 at 4453.960 kb on + strand, within MPMX20_04270 at 4453.968 kb on - strand, within MPMX20_04270 at 4453.999 kb on - strand at 4454.003 kb on + strand at 4454.003 kb on + strand at 4454.004 kb on - strand at 4454.033 kb on + strand at 4454.041 kb on - strand at 4454.078 kb on + strand at 4454.268 kb on + strand at 4454.276 kb on - strand at 4454.324 kb on + strand, within MPMX20_04271 at 4454.335 kb on + strand, within MPMX20_04271 at 4454.498 kb on - strand, within MPMX20_04271 at 4454.622 kb on - strand, within MPMX20_04271 at 4454.648 kb on - strand, within MPMX20_04271 at 4454.812 kb on - strand, within MPMX20_04271 at 4454.880 kb on + strand, within MPMX20_04271 at 4454.971 kb on - strand, within MPMX20_04271 at 4454.989 kb on - strand, within MPMX20_04271
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,452,693 + MPMX20_04269 0.61 -2.0 4,452,700 + MPMX20_04269 0.61 +1.0 4,452,700 + MPMX20_04269 0.61 -0.6 4,452,759 - MPMX20_04269 0.64 -1.2 4,452,781 - MPMX20_04269 0.64 +0.9 4,452,805 - MPMX20_04269 0.65 -0.2 4,452,910 + MPMX20_04269 0.69 +0.1 4,452,940 - MPMX20_04269 0.71 -0.4 4,452,945 - MPMX20_04269 0.71 -0.0 4,453,141 - MPMX20_04269 0.79 +0.4 4,453,144 + MPMX20_04269 0.79 -0.1 4,453,148 - MPMX20_04269 0.79 -0.2 4,453,208 + MPMX20_04269 0.81 +0.2 4,453,208 + MPMX20_04269 0.81 -1.3 4,453,208 + MPMX20_04269 0.81 -1.6 4,453,216 - MPMX20_04269 0.82 +0.7 4,453,218 - MPMX20_04269 0.82 +0.2 4,453,242 + MPMX20_04269 0.83 -0.0 4,453,242 + MPMX20_04269 0.83 +1.1 4,453,288 + MPMX20_04269 0.84 +0.8 4,453,288 + MPMX20_04269 0.84 +0.3 4,453,296 - MPMX20_04269 0.85 -1.0 4,453,308 + MPMX20_04269 0.85 -2.7 4,453,338 + MPMX20_04269 0.86 -2.0 4,453,353 - MPMX20_04269 0.87 -2.1 4,453,392 - MPMX20_04269 0.88 -0.3 4,453,394 + MPMX20_04269 0.89 -1.6 4,453,409 + MPMX20_04269 0.89 -3.2 4,453,633 - +1.5 4,453,692 + -0.9 4,453,728 + MPMX20_04270 0.14 -0.6 4,453,740 + MPMX20_04270 0.18 +0.9 4,453,747 + MPMX20_04270 0.20 +0.2 4,453,815 - MPMX20_04270 0.41 +0.8 4,453,862 + MPMX20_04270 0.55 -0.3 4,453,870 + MPMX20_04270 0.57 -1.0 4,453,927 + MPMX20_04270 0.75 -0.2 4,453,953 - MPMX20_04270 0.83 +2.5 4,453,960 + MPMX20_04270 0.85 +0.8 4,453,960 + MPMX20_04270 0.85 -0.2 4,453,968 - MPMX20_04270 0.87 +0.2 4,453,999 - -1.1 4,454,003 + -0.4 4,454,003 + +0.2 4,454,004 - -0.0 4,454,033 + -0.5 4,454,041 - -2.0 4,454,078 + -0.4 4,454,268 + +0.6 4,454,276 - +0.0 4,454,324 + MPMX20_04271 0.13 -1.0 4,454,335 + MPMX20_04271 0.14 +1.2 4,454,498 - MPMX20_04271 0.26 +0.1 4,454,622 - MPMX20_04271 0.35 -1.4 4,454,648 - MPMX20_04271 0.37 +1.8 4,454,812 - MPMX20_04271 0.49 -0.1 4,454,880 + MPMX20_04271 0.53 -0.4 4,454,971 - MPMX20_04271 0.60 +0.2 4,454,989 - MPMX20_04271 0.61 +1.2
Or see this region's nucleotide sequence