Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02870 and MPMX20_02871 overlap by 14 nucleotides MPMX20_02871 and MPMX20_02872 overlap by 38 nucleotides MPMX20_02872 and MPMX20_02873 overlap by 1 nucleotides MPMX20_02873 and MPMX20_02874 overlap by 1 nucleotides
MPMX20_02870: MPMX20_02870 - hypothetical protein, at 3,023,825 to 3,026,302
_02870
MPMX20_02871: MPMX20_02871 - hypothetical protein, at 3,026,289 to 3,026,705
_02871
MPMX20_02872: MPMX20_02872 - hypothetical protein, at 3,026,668 to 3,027,138
_02872
MPMX20_02873: MPMX20_02873 - hypothetical protein, at 3,027,138 to 3,027,635
_02873
MPMX20_02874: MPMX20_02874 - hypothetical protein, at 3,027,635 to 3,030,565
_02874
Position (kb)
3027
3028 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3026.158 kb on + strand at 3026.158 kb on + strand at 3026.166 kb on - strand at 3026.177 kb on + strand at 3026.248 kb on - strand at 3026.250 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.260 kb on + strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.268 kb on - strand at 3026.286 kb on + strand at 3026.373 kb on - strand, within MPMX20_02871 at 3026.408 kb on - strand, within MPMX20_02871 at 3026.419 kb on - strand, within MPMX20_02871 at 3026.466 kb on - strand, within MPMX20_02871 at 3026.502 kb on - strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.555 kb on + strand, within MPMX20_02871 at 3026.563 kb on - strand, within MPMX20_02871 at 3026.575 kb on + strand, within MPMX20_02871 at 3026.635 kb on + strand, within MPMX20_02871 at 3026.637 kb on - strand, within MPMX20_02871 at 3026.656 kb on - strand, within MPMX20_02871 at 3026.666 kb on + strand at 3026.682 kb on - strand at 3026.699 kb on + strand at 3026.717 kb on + strand, within MPMX20_02872 at 3026.764 kb on + strand, within MPMX20_02872 at 3026.775 kb on + strand, within MPMX20_02872 at 3026.822 kb on - strand, within MPMX20_02872 at 3026.869 kb on + strand, within MPMX20_02872 at 3026.959 kb on + strand, within MPMX20_02872 at 3026.988 kb on + strand, within MPMX20_02872 at 3026.993 kb on + strand, within MPMX20_02872 at 3026.993 kb on + strand, within MPMX20_02872 at 3027.001 kb on - strand, within MPMX20_02872 at 3027.001 kb on - strand, within MPMX20_02872 at 3027.075 kb on + strand, within MPMX20_02872 at 3027.083 kb on - strand, within MPMX20_02872 at 3027.091 kb on - strand, within MPMX20_02872 at 3027.116 kb on - strand at 3027.123 kb on + strand at 3027.123 kb on + strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.131 kb on - strand at 3027.153 kb on - strand at 3027.242 kb on + strand, within MPMX20_02873 at 3027.297 kb on + strand, within MPMX20_02873 at 3027.329 kb on - strand, within MPMX20_02873 at 3027.333 kb on + strand, within MPMX20_02873 at 3027.341 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.373 kb on - strand, within MPMX20_02873 at 3027.430 kb on - strand, within MPMX20_02873 at 3027.443 kb on + strand, within MPMX20_02873 at 3027.475 kb on - strand, within MPMX20_02873 at 3027.497 kb on + strand, within MPMX20_02873 at 3027.561 kb on - strand, within MPMX20_02873 at 3027.622 kb on - strand at 3027.629 kb on - strand at 3027.633 kb on + strand at 3027.654 kb on - strand at 3027.654 kb on - strand at 3027.683 kb on + strand at 3027.702 kb on + strand at 3027.702 kb on + strand at 3027.756 kb on + strand at 3027.756 kb on + strand at 3027.756 kb on + strand at 3027.764 kb on - strand at 3027.764 kb on - strand at 3027.764 kb on - strand at 3027.791 kb on - strand at 3027.873 kb on + strand at 3027.876 kb on + strand at 3027.891 kb on - strand at 3027.891 kb on - strand at 3027.891 kb on - strand at 3027.899 kb on - strand at 3027.993 kb on - strand, within MPMX20_02874 at 3027.993 kb on - strand, within MPMX20_02874 at 3028.039 kb on + strand, within MPMX20_02874 at 3028.076 kb on - strand, within MPMX20_02874 at 3028.080 kb on + strand, within MPMX20_02874 at 3028.109 kb on - strand, within MPMX20_02874 at 3028.143 kb on - strand, within MPMX20_02874 at 3028.174 kb on - strand, within MPMX20_02874 at 3028.194 kb on + strand, within MPMX20_02874 at 3028.236 kb on + strand, within MPMX20_02874 at 3028.241 kb on + strand, within MPMX20_02874 at 3028.241 kb on + strand, within MPMX20_02874 at 3028.249 kb on - strand, within MPMX20_02874 at 3028.249 kb on - strand, within MPMX20_02874 at 3028.249 kb on - strand, within MPMX20_02874 at 3028.249 kb on - strand, within MPMX20_02874 at 3028.249 kb on - strand, within MPMX20_02874 at 3028.261 kb on - strand, within MPMX20_02874 at 3028.281 kb on + strand, within MPMX20_02874 at 3028.415 kb on - strand, within MPMX20_02874 at 3028.499 kb on - strand, within MPMX20_02874 at 3028.522 kb on + strand, within MPMX20_02874 at 3028.542 kb on + strand, within MPMX20_02874 at 3028.560 kb on + strand, within MPMX20_02874
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,026,158 + -2.5 3,026,158 + -0.7 3,026,166 - -2.3 3,026,177 + -2.3 3,026,248 - -0.7 3,026,250 + -1.3 3,026,260 + +0.5 3,026,260 + -1.3 3,026,260 + -1.2 3,026,260 + +0.0 3,026,260 + -1.5 3,026,260 + -2.7 3,026,260 + -0.8 3,026,260 + -3.9 3,026,260 + +0.1 3,026,260 + -0.3 3,026,260 + -1.1 3,026,268 - -0.8 3,026,268 - +0.4 3,026,268 - -0.6 3,026,268 - -2.7 3,026,268 - -2.5 3,026,268 - -1.6 3,026,268 - -0.9 3,026,268 - +3.0 3,026,268 - -1.4 3,026,268 - -2.0 3,026,286 + -2.1 3,026,373 - MPMX20_02871 0.20 -1.4 3,026,408 - MPMX20_02871 0.29 -2.6 3,026,419 - MPMX20_02871 0.31 -1.6 3,026,466 - MPMX20_02871 0.42 -1.8 3,026,502 - MPMX20_02871 0.51 -2.1 3,026,555 + MPMX20_02871 0.64 -2.8 3,026,555 + MPMX20_02871 0.64 -1.0 3,026,555 + MPMX20_02871 0.64 +0.3 3,026,555 + MPMX20_02871 0.64 -0.3 3,026,563 - MPMX20_02871 0.66 -1.3 3,026,575 + MPMX20_02871 0.69 -1.9 3,026,635 + MPMX20_02871 0.83 -0.3 3,026,637 - MPMX20_02871 0.83 -1.0 3,026,656 - MPMX20_02871 0.88 +0.8 3,026,666 + -1.0 3,026,682 - -0.7 3,026,699 + -0.8 3,026,717 + MPMX20_02872 0.10 -2.2 3,026,764 + MPMX20_02872 0.20 -1.0 3,026,775 + MPMX20_02872 0.23 -1.7 3,026,822 - MPMX20_02872 0.33 +0.1 3,026,869 + MPMX20_02872 0.43 +0.0 3,026,959 + MPMX20_02872 0.62 -1.4 3,026,988 + MPMX20_02872 0.68 +0.0 3,026,993 + MPMX20_02872 0.69 -2.5 3,026,993 + MPMX20_02872 0.69 +0.0 3,027,001 - MPMX20_02872 0.71 -2.0 3,027,001 - MPMX20_02872 0.71 -1.0 3,027,075 + MPMX20_02872 0.86 -1.8 3,027,083 - MPMX20_02872 0.88 -0.8 3,027,091 - MPMX20_02872 0.90 -0.8 3,027,116 - +0.1 3,027,123 + -0.6 3,027,123 + -1.1 3,027,131 - -2.5 3,027,131 - +3.0 3,027,131 - -0.7 3,027,131 - +1.4 3,027,131 - -0.7 3,027,131 - -0.9 3,027,131 - -2.3 3,027,153 - -0.3 3,027,242 + MPMX20_02873 0.21 -1.4 3,027,297 + MPMX20_02873 0.32 -5.2 3,027,329 - MPMX20_02873 0.38 -3.5 3,027,333 + MPMX20_02873 0.39 -1.7 3,027,341 - MPMX20_02873 0.41 -0.9 3,027,373 - MPMX20_02873 0.47 -0.5 3,027,373 - MPMX20_02873 0.47 -1.7 3,027,373 - MPMX20_02873 0.47 -0.8 3,027,373 - MPMX20_02873 0.47 -1.2 3,027,430 - MPMX20_02873 0.59 -2.1 3,027,443 + MPMX20_02873 0.61 -1.0 3,027,475 - MPMX20_02873 0.68 -2.2 3,027,497 + MPMX20_02873 0.72 -1.5 3,027,561 - MPMX20_02873 0.85 +0.0 3,027,622 - -3.0 3,027,629 - -3.0 3,027,633 + -0.6 3,027,654 - -1.8 3,027,654 - -2.3 3,027,683 + +0.5 3,027,702 + -3.3 3,027,702 + -1.1 3,027,756 + -0.4 3,027,756 + -1.7 3,027,756 + +0.2 3,027,764 - -1.2 3,027,764 - -0.4 3,027,764 - -1.1 3,027,791 - -2.1 3,027,873 + -0.2 3,027,876 + -1.2 3,027,891 - -1.1 3,027,891 - -0.7 3,027,891 - -5.1 3,027,899 - +0.7 3,027,993 - MPMX20_02874 0.12 -1.5 3,027,993 - MPMX20_02874 0.12 -0.6 3,028,039 + MPMX20_02874 0.14 -2.6 3,028,076 - MPMX20_02874 0.15 -2.1 3,028,080 + MPMX20_02874 0.15 -1.9 3,028,109 - MPMX20_02874 0.16 -3.9 3,028,143 - MPMX20_02874 0.17 -1.9 3,028,174 - MPMX20_02874 0.18 -0.7 3,028,194 + MPMX20_02874 0.19 -1.5 3,028,236 + MPMX20_02874 0.21 -2.3 3,028,241 + MPMX20_02874 0.21 -1.8 3,028,241 + MPMX20_02874 0.21 -2.8 3,028,249 - MPMX20_02874 0.21 -1.2 3,028,249 - MPMX20_02874 0.21 -0.4 3,028,249 - MPMX20_02874 0.21 -3.1 3,028,249 - MPMX20_02874 0.21 -1.0 3,028,249 - MPMX20_02874 0.21 -1.3 3,028,261 - MPMX20_02874 0.21 -3.7 3,028,281 + MPMX20_02874 0.22 +0.1 3,028,415 - MPMX20_02874 0.27 -0.2 3,028,499 - MPMX20_02874 0.29 -0.1 3,028,522 + MPMX20_02874 0.30 -1.2 3,028,542 + MPMX20_02874 0.31 -0.4 3,028,560 + MPMX20_02874 0.32 -0.9
Or see this region's nucleotide sequence