Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04740 and MPMX20_04741 are separated by 179 nucleotides MPMX20_04741 and MPMX20_04742 overlap by 1 nucleotides MPMX20_04742 and MPMX20_04743 are separated by 111 nucleotides
MPMX20_04740: MPMX20_04740 - SOS response-associated protein YedK, at 84,863 to 85,534
_04740
MPMX20_04741: MPMX20_04741 - Protein UmuD, at 85,714 to 86,136
_04741
MPMX20_04742: MPMX20_04742 - Protein UmuC, at 86,136 to 86,807
_04742
MPMX20_04743: MPMX20_04743 - IS481 family transposase ISAzs36, at 86,919 to 87,887
_04743
Position (kb) 85
86
87 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 84.714 kb on + strand at 84.714 kb on - strand at 84.714 kb on - strand at 84.714 kb on - strand at 84.722 kb on + strand at 84.722 kb on - strand at 84.723 kb on + strand at 84.732 kb on - strand at 84.750 kb on + strand at 84.758 kb on - strand at 84.798 kb on - strand at 84.798 kb on - strand at 84.806 kb on + strand at 84.814 kb on - strand at 84.814 kb on - strand at 84.816 kb on + strand at 84.836 kb on - strand at 84.873 kb on + strand at 84.883 kb on + strand at 84.904 kb on - strand at 84.956 kb on - strand, within MPMX20_04740 at 84.964 kb on - strand, within MPMX20_04740 at 84.992 kb on - strand, within MPMX20_04740 at 85.014 kb on + strand, within MPMX20_04740 at 85.014 kb on + strand, within MPMX20_04740 at 85.040 kb on + strand, within MPMX20_04740 at 85.053 kb on - strand, within MPMX20_04740 at 85.071 kb on + strand, within MPMX20_04740 at 85.071 kb on + strand, within MPMX20_04740 at 85.081 kb on + strand, within MPMX20_04740 at 85.095 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.128 kb on - strand, within MPMX20_04740 at 85.138 kb on - strand, within MPMX20_04740 at 85.156 kb on - strand, within MPMX20_04740 at 85.160 kb on + strand, within MPMX20_04740 at 85.165 kb on + strand, within MPMX20_04740 at 85.173 kb on - strand, within MPMX20_04740 at 85.184 kb on + strand, within MPMX20_04740 at 85.192 kb on - strand, within MPMX20_04740 at 85.251 kb on - strand, within MPMX20_04740 at 85.259 kb on + strand, within MPMX20_04740 at 85.265 kb on + strand, within MPMX20_04740 at 85.291 kb on - strand, within MPMX20_04740 at 85.311 kb on - strand, within MPMX20_04740 at 85.348 kb on + strand, within MPMX20_04740 at 85.355 kb on + strand, within MPMX20_04740 at 85.360 kb on + strand, within MPMX20_04740 at 85.360 kb on + strand, within MPMX20_04740 at 85.363 kb on - strand, within MPMX20_04740 at 85.404 kb on + strand, within MPMX20_04740 at 85.422 kb on + strand, within MPMX20_04740 at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.566 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.568 kb on + strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.574 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.576 kb on - strand at 85.586 kb on + strand at 85.591 kb on + strand at 85.592 kb on + strand at 85.592 kb on + strand at 85.592 kb on - strand at 85.594 kb on - strand at 85.602 kb on + strand at 85.625 kb on - strand at 85.706 kb on + strand at 85.730 kb on + strand at 85.741 kb on + strand at 85.741 kb on + strand at 85.747 kb on + strand at 85.752 kb on + strand at 85.764 kb on + strand, within MPMX20_04741 at 85.772 kb on - strand, within MPMX20_04741 at 85.772 kb on - strand, within MPMX20_04741 at 85.784 kb on - strand, within MPMX20_04741 at 85.822 kb on + strand, within MPMX20_04741 at 85.871 kb on + strand, within MPMX20_04741 at 85.903 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.909 kb on + strand, within MPMX20_04741 at 85.912 kb on - strand, within MPMX20_04741 at 85.917 kb on - strand, within MPMX20_04741 at 85.917 kb on - strand, within MPMX20_04741 at 85.933 kb on - strand, within MPMX20_04741 at 85.964 kb on + strand, within MPMX20_04741 at 86.008 kb on + strand, within MPMX20_04741 at 86.016 kb on + strand, within MPMX20_04741 at 86.016 kb on + strand, within MPMX20_04741 at 86.024 kb on - strand, within MPMX20_04741 at 86.024 kb on - strand, within MPMX20_04741 at 86.027 kb on + strand, within MPMX20_04741 at 86.027 kb on + strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.035 kb on - strand, within MPMX20_04741 at 86.057 kb on + strand, within MPMX20_04741 at 86.057 kb on + strand, within MPMX20_04741 at 86.065 kb on - strand, within MPMX20_04741 at 86.072 kb on - strand, within MPMX20_04741 at 86.097 kb on + strand at 86.130 kb on + strand at 86.138 kb on - strand at 86.159 kb on - strand at 86.176 kb on + strand at 86.184 kb on - strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.191 kb on + strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.199 kb on - strand at 86.212 kb on + strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.217 kb on - strand, within MPMX20_04742 at 86.220 kb on - strand, within MPMX20_04742 at 86.227 kb on + strand, within MPMX20_04742 at 86.257 kb on + strand, within MPMX20_04742 at 86.257 kb on + strand, within MPMX20_04742 at 86.265 kb on - strand, within MPMX20_04742 at 86.265 kb on - strand, within MPMX20_04742 at 86.302 kb on - strand, within MPMX20_04742 at 86.306 kb on + strand, within MPMX20_04742 at 86.314 kb on - strand, within MPMX20_04742 at 86.361 kb on - strand, within MPMX20_04742 at 86.368 kb on + strand, within MPMX20_04742 at 86.371 kb on - strand, within MPMX20_04742 at 86.381 kb on - strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.383 kb on + strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.391 kb on - strand, within MPMX20_04742 at 86.400 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.416 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.421 kb on + strand, within MPMX20_04742 at 86.424 kb on - strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.426 kb on + strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.429 kb on - strand, within MPMX20_04742 at 86.489 kb on + strand, within MPMX20_04742 at 86.502 kb on - strand, within MPMX20_04742 at 86.502 kb on - strand, within MPMX20_04742 at 86.519 kb on + strand, within MPMX20_04742 at 86.524 kb on + strand, within MPMX20_04742 at 86.548 kb on + strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.556 kb on - strand, within MPMX20_04742 at 86.558 kb on + strand, within MPMX20_04742 at 86.570 kb on + strand, within MPMX20_04742 at 86.570 kb on + strand, within MPMX20_04742 at 86.570 kb on + strand, within MPMX20_04742 at 86.578 kb on - strand, within MPMX20_04742 at 86.578 kb on - strand, within MPMX20_04742 at 86.578 kb on - strand, within MPMX20_04742 at 86.602 kb on + strand, within MPMX20_04742 at 86.671 kb on - strand, within MPMX20_04742 at 86.732 kb on + strand, within MPMX20_04742 at 86.739 kb on + strand, within MPMX20_04742 at 86.783 kb on - strand at 86.802 kb on + strand at 86.835 kb on + strand at 86.835 kb on + strand at 86.843 kb on - strand at 86.843 kb on - strand at 86.843 kb on - strand at 86.900 kb on - strand at 86.955 kb on + strand at 86.963 kb on - strand at 86.963 kb on - strand at 86.963 kb on - strand at 86.965 kb on + strand at 86.965 kb on - strand at 86.970 kb on + strand at 86.973 kb on - strand at 86.974 kb on + strand at 86.978 kb on - strand at 86.978 kb on - strand at 87.011 kb on - strand at 87.034 kb on + strand, within MPMX20_04743 at 87.034 kb on + strand, within MPMX20_04743 at 87.047 kb on + strand, within MPMX20_04743 at 87.047 kb on + strand, within MPMX20_04743 at 87.047 kb on + strand, within MPMX20_04743 at 87.055 kb on - strand, within MPMX20_04743 at 87.068 kb on + strand, within MPMX20_04743 at 87.081 kb on - strand, within MPMX20_04743 at 87.106 kb on + strand, within MPMX20_04743 at 87.106 kb on + strand, within MPMX20_04743 at 87.106 kb on + strand, within MPMX20_04743 at 87.109 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.114 kb on - strand, within MPMX20_04743 at 87.116 kb on + strand, within MPMX20_04743 at 87.116 kb on + strand, within MPMX20_04743
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 84,714 + -0.1 84,714 - -0.1 84,714 - +0.4 84,714 - +0.4 84,722 + -0.2 84,722 - +1.2 84,723 + -0.7 84,732 - -1.0 84,750 + -1.5 84,758 - -2.0 84,798 - +1.1 84,798 - -0.2 84,806 + -0.1 84,814 - -0.8 84,814 - -0.1 84,816 + -0.6 84,836 - +0.6 84,873 + +0.7 84,883 + +0.3 84,904 - +0.1 84,956 - MPMX20_04740 0.14 -0.0 84,964 - MPMX20_04740 0.15 -0.9 84,992 - MPMX20_04740 0.19 -0.4 85,014 + MPMX20_04740 0.22 -0.4 85,014 + MPMX20_04740 0.22 +0.5 85,040 + MPMX20_04740 0.26 +0.4 85,053 - MPMX20_04740 0.28 -0.9 85,071 + MPMX20_04740 0.31 -0.3 85,071 + MPMX20_04740 0.31 -0.4 85,081 + MPMX20_04740 0.32 +0.6 85,095 - MPMX20_04740 0.35 +0.9 85,128 - MPMX20_04740 0.39 +0.2 85,128 - MPMX20_04740 0.39 +0.4 85,128 - MPMX20_04740 0.39 -0.9 85,138 - MPMX20_04740 0.41 -1.5 85,156 - MPMX20_04740 0.44 -0.3 85,160 + MPMX20_04740 0.44 -0.9 85,165 + MPMX20_04740 0.45 -1.5 85,173 - MPMX20_04740 0.46 -0.8 85,184 + MPMX20_04740 0.48 -0.6 85,192 - MPMX20_04740 0.49 +0.3 85,251 - MPMX20_04740 0.58 -0.7 85,259 + MPMX20_04740 0.59 -0.3 85,265 + MPMX20_04740 0.60 -0.1 85,291 - MPMX20_04740 0.64 -0.1 85,311 - MPMX20_04740 0.67 -0.0 85,348 + MPMX20_04740 0.72 -0.5 85,355 + MPMX20_04740 0.73 -1.0 85,360 + MPMX20_04740 0.74 -0.6 85,360 + MPMX20_04740 0.74 +0.3 85,363 - MPMX20_04740 0.74 -1.1 85,404 + MPMX20_04740 0.81 -0.7 85,422 + MPMX20_04740 0.83 -0.6 85,566 + +0.2 85,566 + -0.1 85,566 + +0.1 85,566 + -0.8 85,566 + +0.5 85,566 + -0.3 85,568 + -1.1 85,568 + -0.5 85,568 + -0.5 85,568 + +0.4 85,568 + -1.2 85,574 - -0.0 85,574 - -0.8 85,574 - -0.4 85,574 - -0.5 85,574 - -1.2 85,574 - -2.7 85,574 - +0.4 85,574 - -0.0 85,574 - +0.4 85,576 - +0.4 85,576 - +0.1 85,576 - -1.9 85,576 - -0.0 85,586 + +0.9 85,591 + +1.1 85,592 + +1.8 85,592 + -0.4 85,592 - -0.3 85,594 - +1.6 85,602 + -0.7 85,625 - +0.7 85,706 + +0.5 85,730 + -0.9 85,741 + -0.0 85,741 + +0.8 85,747 + -0.1 85,752 + -0.8 85,764 + MPMX20_04741 0.12 -1.9 85,772 - MPMX20_04741 0.14 -0.3 85,772 - MPMX20_04741 0.14 +1.1 85,784 - MPMX20_04741 0.17 +0.2 85,822 + MPMX20_04741 0.26 +0.4 85,871 + MPMX20_04741 0.37 -0.6 85,903 + MPMX20_04741 0.45 -0.3 85,909 + MPMX20_04741 0.46 -1.5 85,909 + MPMX20_04741 0.46 -0.6 85,909 + MPMX20_04741 0.46 -2.8 85,912 - MPMX20_04741 0.47 -1.4 85,917 - MPMX20_04741 0.48 -1.4 85,917 - MPMX20_04741 0.48 -1.7 85,933 - MPMX20_04741 0.52 +0.1 85,964 + MPMX20_04741 0.59 -0.1 86,008 + MPMX20_04741 0.70 -0.9 86,016 + MPMX20_04741 0.71 -0.1 86,016 + MPMX20_04741 0.71 +1.1 86,024 - MPMX20_04741 0.73 -0.5 86,024 - MPMX20_04741 0.73 -0.7 86,027 + MPMX20_04741 0.74 +0.5 86,027 + MPMX20_04741 0.74 -0.6 86,035 - MPMX20_04741 0.76 -0.3 86,035 - MPMX20_04741 0.76 -0.8 86,035 - MPMX20_04741 0.76 -1.8 86,057 + MPMX20_04741 0.81 +0.1 86,057 + MPMX20_04741 0.81 -0.7 86,065 - MPMX20_04741 0.83 -0.6 86,072 - MPMX20_04741 0.85 -0.3 86,097 + -0.6 86,130 + -0.2 86,138 - -1.2 86,159 - +0.3 86,176 + +0.7 86,184 - -0.1 86,191 + +0.6 86,191 + -1.3 86,191 + -1.9 86,191 + +3.4 86,191 + +0.3 86,191 + +0.6 86,199 - -0.3 86,199 - -2.2 86,199 - -0.1 86,199 - -1.2 86,212 + MPMX20_04742 0.11 -0.6 86,217 - MPMX20_04742 0.12 +0.3 86,217 - MPMX20_04742 0.12 -0.3 86,217 - MPMX20_04742 0.12 -0.5 86,220 - MPMX20_04742 0.12 +0.0 86,227 + MPMX20_04742 0.14 -0.5 86,257 + MPMX20_04742 0.18 +1.9 86,257 + MPMX20_04742 0.18 -1.3 86,265 - MPMX20_04742 0.19 -0.3 86,265 - MPMX20_04742 0.19 -0.5 86,302 - MPMX20_04742 0.25 -0.4 86,306 + MPMX20_04742 0.25 -0.5 86,314 - MPMX20_04742 0.26 -2.9 86,361 - MPMX20_04742 0.33 +0.5 86,368 + MPMX20_04742 0.35 -0.4 86,371 - MPMX20_04742 0.35 +0.4 86,381 - MPMX20_04742 0.36 -0.3 86,383 + MPMX20_04742 0.37 -0.8 86,383 + MPMX20_04742 0.37 -0.7 86,383 + MPMX20_04742 0.37 +0.5 86,383 + MPMX20_04742 0.37 +2.4 86,391 - MPMX20_04742 0.38 -0.6 86,391 - MPMX20_04742 0.38 -2.3 86,391 - MPMX20_04742 0.38 +0.5 86,391 - MPMX20_04742 0.38 -1.7 86,391 - MPMX20_04742 0.38 -0.0 86,400 + MPMX20_04742 0.39 -0.1 86,416 + MPMX20_04742 0.42 -0.1 86,416 + MPMX20_04742 0.42 -0.4 86,416 + MPMX20_04742 0.42 -0.6 86,421 + MPMX20_04742 0.42 -1.3 86,421 + MPMX20_04742 0.42 -0.2 86,421 + MPMX20_04742 0.42 -1.8 86,421 + MPMX20_04742 0.42 -0.6 86,421 + MPMX20_04742 0.42 -1.3 86,424 - MPMX20_04742 0.43 -0.1 86,426 + MPMX20_04742 0.43 -0.5 86,426 + MPMX20_04742 0.43 -0.5 86,426 + MPMX20_04742 0.43 -0.1 86,426 + MPMX20_04742 0.43 +0.2 86,429 - MPMX20_04742 0.44 -0.2 86,429 - MPMX20_04742 0.44 -0.9 86,429 - MPMX20_04742 0.44 +0.4 86,489 + MPMX20_04742 0.53 -0.6 86,502 - MPMX20_04742 0.54 -0.6 86,502 - MPMX20_04742 0.54 -1.0 86,519 + MPMX20_04742 0.57 +0.6 86,524 + MPMX20_04742 0.58 +0.7 86,548 + MPMX20_04742 0.61 +0.1 86,556 - MPMX20_04742 0.62 -0.9 86,556 - MPMX20_04742 0.62 -1.7 86,556 - MPMX20_04742 0.62 -0.6 86,556 - MPMX20_04742 0.62 -0.8 86,558 + MPMX20_04742 0.63 -1.2 86,570 + MPMX20_04742 0.65 -1.6 86,570 + MPMX20_04742 0.65 -0.6 86,570 + MPMX20_04742 0.65 -0.4 86,578 - MPMX20_04742 0.66 -0.3 86,578 - MPMX20_04742 0.66 -3.1 86,578 - MPMX20_04742 0.66 -0.5 86,602 + MPMX20_04742 0.69 -0.4 86,671 - MPMX20_04742 0.80 -0.7 86,732 + MPMX20_04742 0.89 -0.0 86,739 + MPMX20_04742 0.90 +0.2 86,783 - +1.6 86,802 + +1.1 86,835 + -0.1 86,835 + -1.9 86,843 - +0.1 86,843 - -0.2 86,843 - -0.6 86,900 - -0.8 86,955 + -2.1 86,963 - -1.1 86,963 - -0.5 86,963 - -0.4 86,965 + -1.1 86,965 - -0.8 86,970 + -0.3 86,973 - -1.1 86,974 + -0.8 86,978 - +0.3 86,978 - +2.1 87,011 - -0.8 87,034 + MPMX20_04743 0.12 -0.5 87,034 + MPMX20_04743 0.12 -1.0 87,047 + MPMX20_04743 0.13 -1.1 87,047 + MPMX20_04743 0.13 -1.5 87,047 + MPMX20_04743 0.13 -0.7 87,055 - MPMX20_04743 0.14 +3.6 87,068 + MPMX20_04743 0.15 +0.6 87,081 - MPMX20_04743 0.17 -0.1 87,106 + MPMX20_04743 0.19 +0.4 87,106 + MPMX20_04743 0.19 -1.3 87,106 + MPMX20_04743 0.19 +0.1 87,109 - MPMX20_04743 0.20 +0.1 87,114 - MPMX20_04743 0.20 -0.8 87,114 - MPMX20_04743 0.20 -0.5 87,114 - MPMX20_04743 0.20 -0.2 87,114 - MPMX20_04743 0.20 -0.5 87,114 - MPMX20_04743 0.20 -0.1 87,114 - MPMX20_04743 0.20 -0.6 87,116 + MPMX20_04743 0.20 -0.5 87,116 + MPMX20_04743 0.20 +0.1
Or see this region's nucleotide sequence