Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04684 and MPMX20_04685 are separated by 301 nucleotides MPMX20_04685 and MPMX20_04686 are separated by 131 nucleotides MPMX20_04686 and MPMX20_04687 are separated by 331 nucleotides MPMX20_04687 and MPMX20_04688 are separated by 41 nucleotides
MPMX20_04684: MPMX20_04684 - hypothetical protein, at 37,873 to 38,736
_04684
MPMX20_04685: MPMX20_04685 - hypothetical protein, at 39,038 to 39,280
_04685
MPMX20_04686: MPMX20_04686 - Phospholipase D, at 39,412 to 39,792
_04686
MPMX20_04687: MPMX20_04687 - hypothetical protein, at 40,124 to 40,465
_04687
MPMX20_04688: MPMX20_04688 - hypothetical protein, at 40,507 to 41,238
_04688
Position (kb) 39
40 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 38.450 kb on - strand, within MPMX20_04684 at 38.455 kb on + strand, within MPMX20_04684 at 38.478 kb on + strand, within MPMX20_04684 at 38.498 kb on + strand, within MPMX20_04684 at 38.508 kb on - strand, within MPMX20_04684 at 38.527 kb on + strand, within MPMX20_04684 at 38.552 kb on + strand, within MPMX20_04684 at 38.552 kb on + strand, within MPMX20_04684 at 38.552 kb on + strand, within MPMX20_04684 at 38.560 kb on - strand, within MPMX20_04684 at 38.569 kb on + strand, within MPMX20_04684 at 38.605 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.631 kb on + strand, within MPMX20_04684 at 38.639 kb on - strand, within MPMX20_04684 at 38.639 kb on - strand, within MPMX20_04684 at 38.639 kb on - strand, within MPMX20_04684 at 38.639 kb on - strand, within MPMX20_04684 at 38.639 kb on - strand, within MPMX20_04684 at 38.661 kb on - strand at 38.661 kb on - strand at 38.730 kb on + strand at 38.810 kb on + strand at 38.810 kb on + strand at 38.816 kb on - strand at 38.816 kb on - strand at 38.830 kb on - strand at 38.830 kb on - strand at 38.836 kb on + strand at 38.844 kb on - strand at 38.846 kb on - strand at 38.853 kb on - strand at 38.853 kb on - strand at 38.867 kb on - strand at 38.964 kb on - strand at 38.967 kb on + strand at 39.057 kb on + strand at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.070 kb on + strand, within MPMX20_04685 at 39.078 kb on - strand, within MPMX20_04685 at 39.078 kb on - strand, within MPMX20_04685 at 39.078 kb on - strand, within MPMX20_04685 at 39.101 kb on - strand, within MPMX20_04685 at 39.119 kb on + strand, within MPMX20_04685 at 39.124 kb on - strand, within MPMX20_04685 at 39.205 kb on + strand, within MPMX20_04685 at 39.213 kb on - strand, within MPMX20_04685 at 39.213 kb on - strand, within MPMX20_04685 at 39.213 kb on - strand, within MPMX20_04685 at 39.219 kb on + strand, within MPMX20_04685 at 39.219 kb on + strand, within MPMX20_04685 at 39.219 kb on + strand, within MPMX20_04685 at 39.219 kb on + strand, within MPMX20_04685 at 39.227 kb on - strand, within MPMX20_04685 at 39.289 kb on + strand at 39.289 kb on + strand at 39.289 kb on + strand at 39.295 kb on + strand at 39.320 kb on + strand at 39.328 kb on - strand at 39.377 kb on - strand at 39.377 kb on - strand at 39.383 kb on - strand at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.478 kb on + strand, within MPMX20_04686 at 39.514 kb on + strand, within MPMX20_04686 at 39.546 kb on + strand, within MPMX20_04686 at 39.561 kb on + strand, within MPMX20_04686 at 39.622 kb on - strand, within MPMX20_04686 at 39.622 kb on - strand, within MPMX20_04686 at 39.630 kb on + strand, within MPMX20_04686 at 39.663 kb on - strand, within MPMX20_04686 at 39.687 kb on + strand, within MPMX20_04686 at 39.692 kb on + strand, within MPMX20_04686 at 39.695 kb on - strand, within MPMX20_04686 at 39.716 kb on + strand, within MPMX20_04686 at 39.719 kb on - strand, within MPMX20_04686 at 39.719 kb on - strand, within MPMX20_04686 at 39.723 kb on + strand, within MPMX20_04686 at 39.723 kb on + strand, within MPMX20_04686 at 39.724 kb on - strand, within MPMX20_04686 at 39.724 kb on - strand, within MPMX20_04686 at 39.724 kb on - strand, within MPMX20_04686 at 39.724 kb on - strand, within MPMX20_04686 at 39.731 kb on - strand, within MPMX20_04686 at 39.760 kb on + strand at 39.765 kb on + strand at 39.765 kb on + strand at 39.768 kb on - strand at 39.768 kb on - strand at 39.781 kb on + strand at 39.782 kb on + strand at 39.790 kb on - strand at 39.796 kb on - strand at 39.807 kb on + strand at 39.807 kb on - strand at 39.832 kb on - strand at 39.835 kb on + strand at 39.843 kb on + strand at 39.843 kb on + strand at 39.843 kb on + strand at 39.843 kb on + strand at 39.845 kb on + strand at 39.851 kb on - strand at 39.851 kb on - strand at 39.851 kb on - strand at 39.892 kb on - strand at 39.892 kb on - strand at 39.905 kb on - strand at 39.912 kb on + strand at 39.912 kb on + strand at 39.912 kb on + strand at 39.912 kb on + strand at 39.912 kb on + strand at 39.912 kb on + strand at 39.912 kb on + strand at 39.917 kb on + strand at 39.920 kb on - strand at 39.920 kb on - strand at 39.920 kb on - strand at 39.921 kb on - strand at 39.939 kb on - strand at 39.962 kb on + strand at 40.005 kb on - strand at 40.014 kb on - strand at 40.045 kb on + strand at 40.050 kb on + strand at 40.058 kb on - strand at 40.058 kb on - strand at 40.058 kb on - strand at 40.063 kb on + strand at 40.063 kb on + strand at 40.072 kb on + strand at 40.089 kb on + strand at 40.094 kb on + strand at 40.102 kb on + strand at 40.102 kb on - strand at 40.131 kb on - strand at 40.131 kb on - strand at 40.136 kb on - strand at 40.146 kb on - strand at 40.152 kb on + strand at 40.152 kb on + strand at 40.168 kb on + strand, within MPMX20_04687 at 40.168 kb on + strand, within MPMX20_04687 at 40.197 kb on - strand, within MPMX20_04687 at 40.211 kb on - strand, within MPMX20_04687 at 40.223 kb on - strand, within MPMX20_04687 at 40.241 kb on + strand, within MPMX20_04687 at 40.243 kb on - strand, within MPMX20_04687 at 40.288 kb on - strand, within MPMX20_04687 at 40.307 kb on + strand, within MPMX20_04687 at 40.308 kb on + strand, within MPMX20_04687 at 40.308 kb on + strand, within MPMX20_04687 at 40.308 kb on + strand, within MPMX20_04687 at 40.311 kb on - strand, within MPMX20_04687 at 40.316 kb on - strand, within MPMX20_04687 at 40.316 kb on - strand, within MPMX20_04687 at 40.316 kb on - strand, within MPMX20_04687 at 40.316 kb on - strand, within MPMX20_04687 at 40.316 kb on - strand, within MPMX20_04687 at 40.341 kb on + strand, within MPMX20_04687 at 40.349 kb on + strand, within MPMX20_04687 at 40.349 kb on - strand, within MPMX20_04687 at 40.360 kb on + strand, within MPMX20_04687 at 40.360 kb on + strand, within MPMX20_04687 at 40.368 kb on - strand, within MPMX20_04687 at 40.368 kb on - strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.370 kb on + strand, within MPMX20_04687 at 40.375 kb on + strand, within MPMX20_04687 at 40.375 kb on + strand, within MPMX20_04687 at 40.375 kb on + strand, within MPMX20_04687 at 40.375 kb on + strand, within MPMX20_04687 at 40.378 kb on - strand, within MPMX20_04687 at 40.378 kb on - strand, within MPMX20_04687 at 40.378 kb on - strand, within MPMX20_04687 at 40.378 kb on - strand, within MPMX20_04687 at 40.383 kb on - strand, within MPMX20_04687 at 40.383 kb on - strand, within MPMX20_04687 at 40.383 kb on - strand, within MPMX20_04687 at 40.383 kb on - strand, within MPMX20_04687 at 40.383 kb on - strand, within MPMX20_04687 at 40.393 kb on + strand, within MPMX20_04687 at 40.399 kb on + strand, within MPMX20_04687 at 40.409 kb on + strand, within MPMX20_04687 at 40.473 kb on + strand at 40.494 kb on + strand at 40.495 kb on + strand at 40.502 kb on - strand at 40.503 kb on - strand at 40.505 kb on + strand at 40.505 kb on + strand at 40.505 kb on + strand at 40.505 kb on + strand at 40.505 kb on + strand at 40.505 kb on + strand at 40.505 kb on + strand at 40.532 kb on + strand at 40.542 kb on + strand at 40.542 kb on + strand at 40.550 kb on - strand at 40.550 kb on - strand at 40.557 kb on - strand at 40.567 kb on - strand at 40.567 kb on - strand at 40.602 kb on + strand, within MPMX20_04688 at 40.610 kb on - strand, within MPMX20_04688 at 40.621 kb on + strand, within MPMX20_04688 at 40.624 kb on - strand, within MPMX20_04688 at 40.644 kb on - strand, within MPMX20_04688 at 40.644 kb on - strand, within MPMX20_04688 at 40.644 kb on - strand, within MPMX20_04688 at 40.654 kb on - strand, within MPMX20_04688 at 40.679 kb on + strand, within MPMX20_04688 at 40.679 kb on + strand, within MPMX20_04688 at 40.679 kb on + strand, within MPMX20_04688 at 40.680 kb on - strand, within MPMX20_04688 at 40.687 kb on - strand, within MPMX20_04688 at 40.696 kb on - strand, within MPMX20_04688 at 40.719 kb on + strand, within MPMX20_04688 at 40.719 kb on + strand, within MPMX20_04688 at 40.719 kb on + strand, within MPMX20_04688 at 40.727 kb on - strand, within MPMX20_04688 at 40.735 kb on + strand, within MPMX20_04688 at 40.735 kb on + strand, within MPMX20_04688 at 40.743 kb on - strand, within MPMX20_04688 at 40.743 kb on - strand, within MPMX20_04688 at 40.743 kb on - strand, within MPMX20_04688 at 40.743 kb on - strand, within MPMX20_04688 at 40.758 kb on - strand, within MPMX20_04688 at 40.792 kb on - strand, within MPMX20_04688
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 38,450 - MPMX20_04684 0.67 -1.1 38,455 + MPMX20_04684 0.67 +1.3 38,478 + MPMX20_04684 0.70 -2.6 38,498 + MPMX20_04684 0.72 -1.6 38,508 - MPMX20_04684 0.73 -1.0 38,527 + MPMX20_04684 0.76 +0.1 38,552 + MPMX20_04684 0.79 +0.1 38,552 + MPMX20_04684 0.79 -0.8 38,552 + MPMX20_04684 0.79 -0.6 38,560 - MPMX20_04684 0.80 -2.1 38,569 + MPMX20_04684 0.81 -0.9 38,605 + MPMX20_04684 0.85 -2.7 38,631 + MPMX20_04684 0.88 +0.3 38,631 + MPMX20_04684 0.88 +2.4 38,631 + MPMX20_04684 0.88 +0.9 38,631 + MPMX20_04684 0.88 +0.6 38,631 + MPMX20_04684 0.88 +0.7 38,631 + MPMX20_04684 0.88 +0.0 38,631 + MPMX20_04684 0.88 +2.1 38,639 - MPMX20_04684 0.89 -1.0 38,639 - MPMX20_04684 0.89 -0.5 38,639 - MPMX20_04684 0.89 +0.2 38,639 - MPMX20_04684 0.89 -1.3 38,639 - MPMX20_04684 0.89 -0.9 38,661 - -0.0 38,661 - -1.6 38,730 + -0.0 38,810 + -0.2 38,810 + -0.5 38,816 - +1.0 38,816 - -0.4 38,830 - -0.5 38,830 - -0.4 38,836 + +0.6 38,844 - -1.3 38,846 - -1.1 38,853 - -2.1 38,853 - -1.3 38,867 - +0.9 38,964 - -1.7 38,967 + -1.5 39,057 + -0.2 39,070 + MPMX20_04685 0.13 +1.9 39,070 + MPMX20_04685 0.13 -0.2 39,070 + MPMX20_04685 0.13 -0.5 39,070 + MPMX20_04685 0.13 +0.6 39,070 + MPMX20_04685 0.13 +0.4 39,070 + MPMX20_04685 0.13 -0.1 39,070 + MPMX20_04685 0.13 +1.4 39,070 + MPMX20_04685 0.13 +0.2 39,070 + MPMX20_04685 0.13 -1.9 39,078 - MPMX20_04685 0.16 -0.4 39,078 - MPMX20_04685 0.16 -2.7 39,078 - MPMX20_04685 0.16 -1.4 39,101 - MPMX20_04685 0.26 -2.5 39,119 + MPMX20_04685 0.33 +0.8 39,124 - MPMX20_04685 0.35 +2.1 39,205 + MPMX20_04685 0.69 +0.1 39,213 - MPMX20_04685 0.72 -1.5 39,213 - MPMX20_04685 0.72 -0.7 39,213 - MPMX20_04685 0.72 +0.3 39,219 + MPMX20_04685 0.74 +0.1 39,219 + MPMX20_04685 0.74 +1.4 39,219 + MPMX20_04685 0.74 -0.7 39,219 + MPMX20_04685 0.74 +0.2 39,227 - MPMX20_04685 0.78 +2.1 39,289 + +0.9 39,289 + -1.5 39,289 + +0.8 39,295 + -0.6 39,320 + -0.4 39,328 - -0.7 39,377 - +1.2 39,377 - +0.6 39,383 - -1.1 39,478 + MPMX20_04686 0.17 -0.2 39,478 + MPMX20_04686 0.17 +0.1 39,478 + MPMX20_04686 0.17 -0.3 39,478 + MPMX20_04686 0.17 -0.7 39,478 + MPMX20_04686 0.17 -0.7 39,478 + MPMX20_04686 0.17 +1.1 39,478 + MPMX20_04686 0.17 -0.7 39,478 + MPMX20_04686 0.17 +0.6 39,478 + MPMX20_04686 0.17 -1.2 39,478 + MPMX20_04686 0.17 -0.7 39,514 + MPMX20_04686 0.27 -0.8 39,546 + MPMX20_04686 0.35 +0.1 39,561 + MPMX20_04686 0.39 +2.1 39,622 - MPMX20_04686 0.55 -5.7 39,622 - MPMX20_04686 0.55 -1.5 39,630 + MPMX20_04686 0.57 -0.0 39,663 - MPMX20_04686 0.66 -2.0 39,687 + MPMX20_04686 0.72 -0.6 39,692 + MPMX20_04686 0.73 -3.2 39,695 - MPMX20_04686 0.74 +0.8 39,716 + MPMX20_04686 0.80 -0.8 39,719 - MPMX20_04686 0.81 -3.7 39,719 - MPMX20_04686 0.81 -2.7 39,723 + MPMX20_04686 0.82 -0.2 39,723 + MPMX20_04686 0.82 -0.7 39,724 - MPMX20_04686 0.82 -2.3 39,724 - MPMX20_04686 0.82 -2.9 39,724 - MPMX20_04686 0.82 -1.0 39,724 - MPMX20_04686 0.82 -4.0 39,731 - MPMX20_04686 0.84 -2.4 39,760 + -1.3 39,765 + +1.5 39,765 + -2.1 39,768 - -2.2 39,768 - -3.7 39,781 + -1.2 39,782 + +0.3 39,790 - -2.4 39,796 - -3.6 39,807 + +1.9 39,807 - -3.6 39,832 - -2.3 39,835 + -0.2 39,843 + -0.1 39,843 + -0.4 39,843 + +0.2 39,843 + +0.2 39,845 + -0.4 39,851 - -1.1 39,851 - -2.6 39,851 - -2.5 39,892 - -1.9 39,892 - -2.8 39,905 - -1.6 39,912 + -1.7 39,912 + -0.3 39,912 + +0.5 39,912 + -0.4 39,912 + +0.4 39,912 + -0.7 39,912 + +0.1 39,917 + -1.6 39,920 - -1.3 39,920 - -2.1 39,920 - -0.1 39,921 - -0.6 39,939 - -1.7 39,962 + -0.7 40,005 - -0.5 40,014 - +0.7 40,045 + +0.6 40,050 + -0.0 40,058 - +1.1 40,058 - -0.8 40,058 - -1.2 40,063 + +0.2 40,063 + +1.0 40,072 + -0.2 40,089 + -0.9 40,094 + +0.4 40,102 + -0.1 40,102 - -0.9 40,131 - -1.2 40,131 - +0.6 40,136 - -0.9 40,146 - +0.1 40,152 + +0.4 40,152 + -0.7 40,168 + MPMX20_04687 0.13 -0.0 40,168 + MPMX20_04687 0.13 +0.3 40,197 - MPMX20_04687 0.21 +0.3 40,211 - MPMX20_04687 0.25 +0.8 40,223 - MPMX20_04687 0.29 -1.9 40,241 + MPMX20_04687 0.34 +0.3 40,243 - MPMX20_04687 0.35 -0.0 40,288 - MPMX20_04687 0.48 -2.8 40,307 + MPMX20_04687 0.54 +1.1 40,308 + MPMX20_04687 0.54 +1.1 40,308 + MPMX20_04687 0.54 -1.5 40,308 + MPMX20_04687 0.54 -0.4 40,311 - MPMX20_04687 0.55 -2.3 40,316 - MPMX20_04687 0.56 +0.1 40,316 - MPMX20_04687 0.56 -1.2 40,316 - MPMX20_04687 0.56 -2.0 40,316 - MPMX20_04687 0.56 -1.9 40,316 - MPMX20_04687 0.56 -1.9 40,341 + MPMX20_04687 0.63 -0.9 40,349 + MPMX20_04687 0.66 +0.0 40,349 - MPMX20_04687 0.66 -0.7 40,360 + MPMX20_04687 0.69 -0.4 40,360 + MPMX20_04687 0.69 +0.2 40,368 - MPMX20_04687 0.71 -1.4 40,368 - MPMX20_04687 0.71 -2.1 40,370 + MPMX20_04687 0.72 +1.5 40,370 + MPMX20_04687 0.72 -1.1 40,370 + MPMX20_04687 0.72 +0.0 40,370 + MPMX20_04687 0.72 +0.6 40,370 + MPMX20_04687 0.72 +0.3 40,370 + MPMX20_04687 0.72 +0.7 40,370 + MPMX20_04687 0.72 +0.2 40,370 + MPMX20_04687 0.72 +1.6 40,370 + MPMX20_04687 0.72 +0.6 40,375 + MPMX20_04687 0.73 +1.1 40,375 + MPMX20_04687 0.73 -0.3 40,375 + MPMX20_04687 0.73 +0.1 40,375 + MPMX20_04687 0.73 -0.3 40,378 - MPMX20_04687 0.74 -1.3 40,378 - MPMX20_04687 0.74 -0.5 40,378 - MPMX20_04687 0.74 -1.3 40,378 - MPMX20_04687 0.74 -0.5 40,383 - MPMX20_04687 0.76 -0.8 40,383 - MPMX20_04687 0.76 -0.9 40,383 - MPMX20_04687 0.76 -2.1 40,383 - MPMX20_04687 0.76 -2.2 40,383 - MPMX20_04687 0.76 -2.0 40,393 + MPMX20_04687 0.79 -0.0 40,399 + MPMX20_04687 0.80 -0.1 40,409 + MPMX20_04687 0.83 +2.0 40,473 + +0.3 40,494 + +0.8 40,495 + +0.5 40,502 - -0.9 40,503 - -3.0 40,505 + +1.8 40,505 + -0.6 40,505 + +1.0 40,505 + +0.3 40,505 + -0.4 40,505 + +1.1 40,505 + -2.6 40,532 + -1.3 40,542 + -0.1 40,542 + +0.4 40,550 - -0.7 40,550 - -1.2 40,557 - +0.0 40,567 - -0.2 40,567 - +0.3 40,602 + MPMX20_04688 0.13 +0.8 40,610 - MPMX20_04688 0.14 +0.2 40,621 + MPMX20_04688 0.16 +0.6 40,624 - MPMX20_04688 0.16 -1.3 40,644 - MPMX20_04688 0.19 +0.4 40,644 - MPMX20_04688 0.19 +0.4 40,644 - MPMX20_04688 0.19 +0.1 40,654 - MPMX20_04688 0.20 -0.0 40,679 + MPMX20_04688 0.23 +0.7 40,679 + MPMX20_04688 0.23 +0.5 40,679 + MPMX20_04688 0.23 +0.0 40,680 - MPMX20_04688 0.24 +1.1 40,687 - MPMX20_04688 0.25 +0.6 40,696 - MPMX20_04688 0.26 +0.3 40,719 + MPMX20_04688 0.29 -0.2 40,719 + MPMX20_04688 0.29 -0.6 40,719 + MPMX20_04688 0.29 +0.1 40,727 - MPMX20_04688 0.30 +0.4 40,735 + MPMX20_04688 0.31 +0.7 40,735 + MPMX20_04688 0.31 +0.3 40,743 - MPMX20_04688 0.32 +0.8 40,743 - MPMX20_04688 0.32 +0.4 40,743 - MPMX20_04688 0.32 -0.4 40,743 - MPMX20_04688 0.32 +2.0 40,758 - MPMX20_04688 0.34 -0.4 40,792 - MPMX20_04688 0.39 -1.1
Or see this region's nucleotide sequence