Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04522 and MPMX20_04523 are separated by 88 nucleotides MPMX20_04523 and MPMX20_04524 are separated by 270 nucleotides
MPMX20_04522: MPMX20_04522 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,730,395 to 4,731,399
_04522
MPMX20_04523: MPMX20_04523 - Acetylornithine deacetylase, at 4,731,488 to 4,732,639
_04523
MPMX20_04524: MPMX20_04524 - Phosphoenolpyruvate carboxylase, at 4,732,910 to 4,735,561
_04524
Position (kb)
4731
4732
4733 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4730.606 kb on + strand, within MPMX20_04522 at 4730.611 kb on + strand, within MPMX20_04522 at 4730.624 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.709 kb on - strand, within MPMX20_04522 at 4730.719 kb on + strand, within MPMX20_04522 at 4730.792 kb on - strand, within MPMX20_04522 at 4730.792 kb on - strand, within MPMX20_04522 at 4730.874 kb on + strand, within MPMX20_04522 at 4730.897 kb on - strand, within MPMX20_04522 at 4730.942 kb on - strand, within MPMX20_04522 at 4730.983 kb on + strand, within MPMX20_04522 at 4730.991 kb on + strand, within MPMX20_04522 at 4730.999 kb on - strand, within MPMX20_04522 at 4730.999 kb on - strand, within MPMX20_04522 at 4731.001 kb on + strand, within MPMX20_04522 at 4731.028 kb on + strand, within MPMX20_04522 at 4731.030 kb on + strand, within MPMX20_04522 at 4731.038 kb on - strand, within MPMX20_04522 at 4731.038 kb on - strand, within MPMX20_04522 at 4731.070 kb on + strand, within MPMX20_04522 at 4731.094 kb on - strand, within MPMX20_04522 at 4731.095 kb on + strand, within MPMX20_04522 at 4731.185 kb on - strand, within MPMX20_04522 at 4731.286 kb on + strand, within MPMX20_04522 at 4731.286 kb on + strand, within MPMX20_04522 at 4731.291 kb on + strand, within MPMX20_04522 at 4731.291 kb on + strand, within MPMX20_04522 at 4731.294 kb on - strand, within MPMX20_04522 at 4731.343 kb on + strand at 4731.359 kb on - strand at 4731.406 kb on + strand at 4731.414 kb on - strand at 4731.469 kb on + strand at 4731.542 kb on + strand at 4731.550 kb on - strand at 4731.572 kb on + strand at 4731.640 kb on + strand, within MPMX20_04523 at 4731.687 kb on + strand, within MPMX20_04523 at 4731.687 kb on + strand, within MPMX20_04523 at 4731.695 kb on - strand, within MPMX20_04523 at 4731.697 kb on + strand, within MPMX20_04523 at 4731.720 kb on - strand, within MPMX20_04523 at 4731.771 kb on + strand, within MPMX20_04523 at 4731.789 kb on - strand, within MPMX20_04523 at 4731.807 kb on - strand, within MPMX20_04523 at 4731.862 kb on - strand, within MPMX20_04523 at 4731.867 kb on - strand, within MPMX20_04523 at 4731.883 kb on + strand, within MPMX20_04523 at 4731.886 kb on - strand, within MPMX20_04523 at 4731.888 kb on - strand, within MPMX20_04523 at 4732.070 kb on - strand, within MPMX20_04523 at 4732.075 kb on - strand, within MPMX20_04523 at 4732.189 kb on + strand, within MPMX20_04523 at 4732.224 kb on + strand, within MPMX20_04523 at 4732.232 kb on - strand, within MPMX20_04523 at 4732.251 kb on - strand, within MPMX20_04523 at 4732.298 kb on - strand, within MPMX20_04523 at 4732.377 kb on + strand, within MPMX20_04523 at 4732.482 kb on - strand, within MPMX20_04523 at 4732.504 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.509 kb on + strand, within MPMX20_04523 at 4732.517 kb on - strand, within MPMX20_04523 at 4732.589 kb on - strand at 4732.593 kb on + strand at 4732.612 kb on + strand at 4732.674 kb on + strand at 4732.680 kb on + strand at 4732.680 kb on + strand at 4732.680 kb on + strand at 4732.680 kb on + strand at 4732.682 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.688 kb on - strand at 4732.727 kb on + strand at 4732.727 kb on + strand at 4732.779 kb on - strand at 4732.835 kb on - strand at 4732.941 kb on - strand at 4732.941 kb on - strand at 4732.970 kb on - strand at 4733.077 kb on + strand at 4733.085 kb on - strand at 4733.152 kb on + strand at 4733.165 kb on + strand at 4733.168 kb on - strand at 4733.282 kb on + strand, within MPMX20_04524 at 4733.312 kb on - strand, within MPMX20_04524 at 4733.316 kb on - strand, within MPMX20_04524 at 4733.369 kb on + strand, within MPMX20_04524 at 4733.369 kb on - strand, within MPMX20_04524 at 4733.379 kb on + strand, within MPMX20_04524 at 4733.456 kb on + strand, within MPMX20_04524 at 4733.461 kb on + strand, within MPMX20_04524 at 4733.461 kb on + strand, within MPMX20_04524 at 4733.461 kb on + strand, within MPMX20_04524 at 4733.469 kb on - strand, within MPMX20_04524 at 4733.493 kb on + strand, within MPMX20_04524 at 4733.493 kb on + strand, within MPMX20_04524 at 4733.512 kb on + strand, within MPMX20_04524 at 4733.523 kb on + strand, within MPMX20_04524 at 4733.524 kb on - strand, within MPMX20_04524 at 4733.548 kb on + strand, within MPMX20_04524 at 4733.548 kb on + strand, within MPMX20_04524 at 4733.590 kb on + strand, within MPMX20_04524
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,730,606 + MPMX20_04522 0.21 +0.1 4,730,611 + MPMX20_04522 0.21 +0.3 4,730,624 - MPMX20_04522 0.23 -2.7 4,730,709 - MPMX20_04522 0.31 -1.3 4,730,709 - MPMX20_04522 0.31 -1.5 4,730,709 - MPMX20_04522 0.31 -0.6 4,730,719 + MPMX20_04522 0.32 +0.3 4,730,792 - MPMX20_04522 0.40 +0.3 4,730,792 - MPMX20_04522 0.40 +1.4 4,730,874 + MPMX20_04522 0.48 +1.2 4,730,897 - MPMX20_04522 0.50 -0.5 4,730,942 - MPMX20_04522 0.54 +0.1 4,730,983 + MPMX20_04522 0.59 +2.2 4,730,991 + MPMX20_04522 0.59 -0.9 4,730,999 - MPMX20_04522 0.60 +3.3 4,730,999 - MPMX20_04522 0.60 +0.2 4,731,001 + MPMX20_04522 0.60 -1.1 4,731,028 + MPMX20_04522 0.63 -1.3 4,731,030 + MPMX20_04522 0.63 +0.6 4,731,038 - MPMX20_04522 0.64 -1.5 4,731,038 - MPMX20_04522 0.64 +0.6 4,731,070 + MPMX20_04522 0.67 -2.3 4,731,094 - MPMX20_04522 0.70 -0.3 4,731,095 + MPMX20_04522 0.70 -0.5 4,731,185 - MPMX20_04522 0.79 -2.2 4,731,286 + MPMX20_04522 0.89 -1.3 4,731,286 + MPMX20_04522 0.89 +1.3 4,731,291 + MPMX20_04522 0.89 +0.6 4,731,291 + MPMX20_04522 0.89 -0.8 4,731,294 - MPMX20_04522 0.89 +0.2 4,731,343 + +1.1 4,731,359 - -0.2 4,731,406 + -0.3 4,731,414 - +0.1 4,731,469 + -0.1 4,731,542 + -0.8 4,731,550 - +0.9 4,731,572 + +0.1 4,731,640 + MPMX20_04523 0.13 -0.7 4,731,687 + MPMX20_04523 0.17 +0.0 4,731,687 + MPMX20_04523 0.17 +1.0 4,731,695 - MPMX20_04523 0.18 +0.4 4,731,697 + MPMX20_04523 0.18 -0.5 4,731,720 - MPMX20_04523 0.20 -0.1 4,731,771 + MPMX20_04523 0.25 -0.4 4,731,789 - MPMX20_04523 0.26 +0.3 4,731,807 - MPMX20_04523 0.28 -0.1 4,731,862 - MPMX20_04523 0.32 -0.1 4,731,867 - MPMX20_04523 0.33 -0.9 4,731,883 + MPMX20_04523 0.34 -0.7 4,731,886 - MPMX20_04523 0.35 -1.2 4,731,888 - MPMX20_04523 0.35 -1.3 4,732,070 - MPMX20_04523 0.51 -1.4 4,732,075 - MPMX20_04523 0.51 +0.5 4,732,189 + MPMX20_04523 0.61 -1.1 4,732,224 + MPMX20_04523 0.64 -0.7 4,732,232 - MPMX20_04523 0.65 +1.9 4,732,251 - MPMX20_04523 0.66 -0.7 4,732,298 - MPMX20_04523 0.70 +0.2 4,732,377 + MPMX20_04523 0.77 +0.3 4,732,482 - MPMX20_04523 0.86 +0.3 4,732,504 + MPMX20_04523 0.88 -1.1 4,732,509 + MPMX20_04523 0.89 -1.5 4,732,509 + MPMX20_04523 0.89 -0.3 4,732,509 + MPMX20_04523 0.89 -0.1 4,732,509 + MPMX20_04523 0.89 +0.1 4,732,517 - MPMX20_04523 0.89 +1.1 4,732,589 - -0.6 4,732,593 + +1.2 4,732,612 + +0.3 4,732,674 + -0.6 4,732,680 + -1.5 4,732,680 + +1.2 4,732,680 + -0.4 4,732,680 + +0.5 4,732,682 - +0.5 4,732,688 - -0.4 4,732,688 - +0.4 4,732,688 - -0.5 4,732,688 - +0.0 4,732,688 - +4.2 4,732,688 - +0.3 4,732,727 + -0.4 4,732,727 + +2.4 4,732,779 - -0.7 4,732,835 - -1.7 4,732,941 - -0.9 4,732,941 - -0.6 4,732,970 - +2.4 4,733,077 + -0.2 4,733,085 - +0.5 4,733,152 + +0.8 4,733,165 + -0.5 4,733,168 - -0.6 4,733,282 + MPMX20_04524 0.14 -1.1 4,733,312 - MPMX20_04524 0.15 -0.5 4,733,316 - MPMX20_04524 0.15 +0.2 4,733,369 + MPMX20_04524 0.17 +0.3 4,733,369 - MPMX20_04524 0.17 -1.1 4,733,379 + MPMX20_04524 0.18 +0.0 4,733,456 + MPMX20_04524 0.21 -1.4 4,733,461 + MPMX20_04524 0.21 -0.5 4,733,461 + MPMX20_04524 0.21 +0.0 4,733,461 + MPMX20_04524 0.21 -1.1 4,733,469 - MPMX20_04524 0.21 -0.9 4,733,493 + MPMX20_04524 0.22 +0.1 4,733,493 + MPMX20_04524 0.22 +0.1 4,733,512 + MPMX20_04524 0.23 -0.2 4,733,523 + MPMX20_04524 0.23 -1.0 4,733,524 - MPMX20_04524 0.23 +0.9 4,733,548 + MPMX20_04524 0.24 +0.7 4,733,548 + MPMX20_04524 0.24 -2.1 4,733,590 + MPMX20_04524 0.26 +0.2
Or see this region's nucleotide sequence