Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04490 and MPMX20_04491 are separated by 341 nucleotides MPMX20_04491 and MPMX20_04492 are separated by 144 nucleotides
MPMX20_04490: MPMX20_04490 - Transcription termination factor Rho, at 4,694,814 to 4,696,073
_04490
MPMX20_04491: MPMX20_04491 - Thioredoxin 1, at 4,696,415 to 4,696,744
_04491
MPMX20_04492: MPMX20_04492 - ATP-dependent RNA helicase RhlB, at 4,696,889 to 4,698,154
_04492
Position (kb)
4696
4697 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4696.080 kb on - strand at 4696.158 kb on - strand at 4696.173 kb on - strand at 4696.173 kb on - strand at 4696.246 kb on - strand at 4696.380 kb on - strand at 4696.418 kb on + strand at 4696.421 kb on - strand at 4696.431 kb on - strand at 4696.452 kb on + strand, within MPMX20_04491 at 4696.452 kb on + strand, within MPMX20_04491 at 4696.452 kb on + strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.460 kb on - strand, within MPMX20_04491 at 4696.504 kb on + strand, within MPMX20_04491 at 4696.563 kb on + strand, within MPMX20_04491 at 4696.646 kb on + strand, within MPMX20_04491 at 4696.649 kb on - strand, within MPMX20_04491 at 4696.672 kb on + strand, within MPMX20_04491 at 4696.672 kb on + strand, within MPMX20_04491 at 4696.672 kb on + strand, within MPMX20_04491 at 4696.686 kb on + strand, within MPMX20_04491 at 4696.686 kb on + strand, within MPMX20_04491 at 4696.686 kb on + strand, within MPMX20_04491 at 4696.694 kb on - strand, within MPMX20_04491 at 4696.694 kb on - strand, within MPMX20_04491 at 4696.702 kb on + strand, within MPMX20_04491 at 4696.758 kb on + strand at 4696.759 kb on + strand at 4696.766 kb on - strand at 4696.766 kb on - strand at 4696.786 kb on + strand at 4696.786 kb on - strand at 4696.788 kb on + strand at 4696.788 kb on + strand at 4696.788 kb on + strand at 4696.788 kb on + strand at 4696.796 kb on - strand at 4696.796 kb on - strand at 4696.798 kb on - strand at 4696.866 kb on - strand at 4696.878 kb on - strand at 4696.878 kb on - strand at 4696.996 kb on + strand at 4697.004 kb on - strand at 4697.008 kb on + strand at 4697.014 kb on - strand at 4697.029 kb on + strand, within MPMX20_04492 at 4697.029 kb on + strand, within MPMX20_04492 at 4697.032 kb on - strand, within MPMX20_04492 at 4697.039 kb on + strand, within MPMX20_04492 at 4697.047 kb on - strand, within MPMX20_04492 at 4697.047 kb on - strand, within MPMX20_04492 at 4697.138 kb on - strand, within MPMX20_04492 at 4697.152 kb on + strand, within MPMX20_04492 at 4697.152 kb on + strand, within MPMX20_04492 at 4697.180 kb on + strand, within MPMX20_04492 at 4697.188 kb on - strand, within MPMX20_04492 at 4697.188 kb on - strand, within MPMX20_04492 at 4697.209 kb on + strand, within MPMX20_04492 at 4697.239 kb on + strand, within MPMX20_04492 at 4697.247 kb on - strand, within MPMX20_04492 at 4697.331 kb on + strand, within MPMX20_04492 at 4697.346 kb on + strand, within MPMX20_04492 at 4697.346 kb on + strand, within MPMX20_04492 at 4697.353 kb on + strand, within MPMX20_04492 at 4697.353 kb on + strand, within MPMX20_04492 at 4697.476 kb on + strand, within MPMX20_04492 at 4697.583 kb on + strand, within MPMX20_04492 at 4697.596 kb on - strand, within MPMX20_04492 at 4697.647 kb on + strand, within MPMX20_04492 at 4697.727 kb on + strand, within MPMX20_04492
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,696,080 - -0.4 4,696,158 - -0.5 4,696,173 - -0.1 4,696,173 - -0.2 4,696,246 - +1.5 4,696,380 - +1.9 4,696,418 + -0.6 4,696,421 - +0.7 4,696,431 - +0.9 4,696,452 + MPMX20_04491 0.11 +0.9 4,696,452 + MPMX20_04491 0.11 -1.8 4,696,452 + MPMX20_04491 0.11 -2.4 4,696,460 - MPMX20_04491 0.14 +0.2 4,696,460 - MPMX20_04491 0.14 -2.0 4,696,460 - MPMX20_04491 0.14 -1.3 4,696,460 - MPMX20_04491 0.14 -0.7 4,696,504 + MPMX20_04491 0.27 +0.2 4,696,563 + MPMX20_04491 0.45 -1.4 4,696,646 + MPMX20_04491 0.70 -0.9 4,696,649 - MPMX20_04491 0.71 +0.8 4,696,672 + MPMX20_04491 0.78 -1.5 4,696,672 + MPMX20_04491 0.78 -2.2 4,696,672 + MPMX20_04491 0.78 -1.9 4,696,686 + MPMX20_04491 0.82 -0.4 4,696,686 + MPMX20_04491 0.82 -0.4 4,696,686 + MPMX20_04491 0.82 -1.1 4,696,694 - MPMX20_04491 0.85 -0.4 4,696,694 - MPMX20_04491 0.85 -2.9 4,696,702 + MPMX20_04491 0.87 +1.1 4,696,758 + -2.3 4,696,759 + -0.9 4,696,766 - +0.3 4,696,766 - -0.1 4,696,786 + +0.0 4,696,786 - +0.6 4,696,788 + -1.4 4,696,788 + -0.6 4,696,788 + +0.9 4,696,788 + -0.4 4,696,796 - -0.8 4,696,796 - -1.4 4,696,798 - -0.9 4,696,866 - -0.7 4,696,878 - -1.3 4,696,878 - +0.1 4,696,996 + -0.1 4,697,004 - -0.0 4,697,008 + -2.2 4,697,014 - -2.1 4,697,029 + MPMX20_04492 0.11 -1.0 4,697,029 + MPMX20_04492 0.11 -0.5 4,697,032 - MPMX20_04492 0.11 +0.0 4,697,039 + MPMX20_04492 0.12 +0.0 4,697,047 - MPMX20_04492 0.12 -0.2 4,697,047 - MPMX20_04492 0.12 -2.4 4,697,138 - MPMX20_04492 0.20 +0.8 4,697,152 + MPMX20_04492 0.21 -0.9 4,697,152 + MPMX20_04492 0.21 -0.6 4,697,180 + MPMX20_04492 0.23 -0.3 4,697,188 - MPMX20_04492 0.24 -1.3 4,697,188 - MPMX20_04492 0.24 -0.1 4,697,209 + MPMX20_04492 0.25 +0.2 4,697,239 + MPMX20_04492 0.28 +0.3 4,697,247 - MPMX20_04492 0.28 +2.2 4,697,331 + MPMX20_04492 0.35 -0.3 4,697,346 + MPMX20_04492 0.36 -0.1 4,697,346 + MPMX20_04492 0.36 -0.2 4,697,353 + MPMX20_04492 0.37 +0.5 4,697,353 + MPMX20_04492 0.37 -0.7 4,697,476 + MPMX20_04492 0.46 -0.9 4,697,583 + MPMX20_04492 0.55 -2.0 4,697,596 - MPMX20_04492 0.56 -0.6 4,697,647 + MPMX20_04492 0.60 -1.1 4,697,727 + MPMX20_04492 0.66 -1.7
Or see this region's nucleotide sequence