Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04464 and MPMX20_04465 overlap by 1 nucleotides MPMX20_04465 and MPMX20_04466 overlap by 4 nucleotides MPMX20_04466 and MPMX20_04467 overlap by 4 nucleotides
MPMX20_04464: MPMX20_04464 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,668,832 to 4,669,548
_04464
MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450
_04465
MPMX20_04466: MPMX20_04466 - hypothetical protein, at 4,670,447 to 4,671,154
_04466
MPMX20_04467: MPMX20_04467 - Diaminopimelate epimerase, at 4,671,151 to 4,671,975
_04467
Position (kb)
4670
4671
4672 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4669.457 kb on + strand, within MPMX20_04464 at 4669.470 kb on - strand, within MPMX20_04464 at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.520 kb on - strand at 4669.534 kb on - strand at 4669.618 kb on + strand at 4669.618 kb on + strand at 4669.626 kb on - strand at 4669.650 kb on + strand, within MPMX20_04465 at 4669.658 kb on - strand, within MPMX20_04465 at 4669.743 kb on + strand, within MPMX20_04465 at 4669.769 kb on - strand, within MPMX20_04465 at 4669.769 kb on - strand, within MPMX20_04465 at 4669.774 kb on + strand, within MPMX20_04465 at 4669.787 kb on - strand, within MPMX20_04465 at 4669.851 kb on - strand, within MPMX20_04465 at 4669.862 kb on + strand, within MPMX20_04465 at 4669.862 kb on + strand, within MPMX20_04465 at 4669.867 kb on + strand, within MPMX20_04465 at 4669.870 kb on - strand, within MPMX20_04465 at 4669.875 kb on - strand, within MPMX20_04465 at 4669.927 kb on + strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4670.022 kb on - strand, within MPMX20_04465 at 4670.022 kb on - strand, within MPMX20_04465 at 4670.040 kb on + strand, within MPMX20_04465 at 4670.136 kb on - strand, within MPMX20_04465 at 4670.169 kb on - strand, within MPMX20_04465 at 4670.180 kb on - strand, within MPMX20_04465 at 4670.197 kb on + strand, within MPMX20_04465 at 4670.240 kb on - strand, within MPMX20_04465 at 4670.371 kb on + strand at 4670.385 kb on - strand at 4670.404 kb on - strand at 4670.404 kb on - strand at 4670.404 kb on - strand at 4670.481 kb on + strand at 4670.493 kb on - strand at 4670.518 kb on - strand, within MPMX20_04466 at 4670.535 kb on - strand, within MPMX20_04466 at 4670.561 kb on + strand, within MPMX20_04466 at 4670.652 kb on - strand, within MPMX20_04466 at 4670.662 kb on + strand, within MPMX20_04466 at 4670.746 kb on - strand, within MPMX20_04466 at 4670.757 kb on - strand, within MPMX20_04466 at 4670.788 kb on + strand, within MPMX20_04466 at 4670.852 kb on + strand, within MPMX20_04466 at 4671.009 kb on - strand, within MPMX20_04466 at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.202 kb on - strand at 4671.202 kb on - strand at 4671.211 kb on + strand at 4671.219 kb on - strand at 4671.280 kb on + strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.462 kb on - strand, within MPMX20_04467 at 4671.474 kb on + strand, within MPMX20_04467 at 4671.503 kb on + strand, within MPMX20_04467 at 4671.526 kb on + strand, within MPMX20_04467 at 4671.534 kb on - strand, within MPMX20_04467 at 4671.534 kb on - strand, within MPMX20_04467 at 4671.595 kb on + strand, within MPMX20_04467 at 4671.596 kb on + strand, within MPMX20_04467 at 4671.611 kb on - strand, within MPMX20_04467 at 4671.653 kb on + strand, within MPMX20_04467 at 4671.740 kb on - strand, within MPMX20_04467 at 4671.776 kb on - strand, within MPMX20_04467 at 4671.776 kb on - strand, within MPMX20_04467 at 4671.841 kb on - strand, within MPMX20_04467 at 4671.866 kb on - strand, within MPMX20_04467 at 4671.891 kb on + strand, within MPMX20_04467 at 4672.073 kb on + strand at 4672.081 kb on - strand at 4672.081 kb on - strand at 4672.093 kb on + strand at 4672.101 kb on - strand at 4672.101 kb on - strand at 4672.141 kb on + strand at 4672.151 kb on + strand at 4672.151 kb on + strand at 4672.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,669,457 + MPMX20_04464 0.87 +1.4 4,669,470 - MPMX20_04464 0.89 -0.4 4,669,508 - -0.0 4,669,508 - -1.4 4,669,508 - +0.2 4,669,520 - +0.5 4,669,534 - -0.0 4,669,618 + -2.6 4,669,618 + -1.7 4,669,626 - -1.3 4,669,650 + MPMX20_04465 0.11 -1.0 4,669,658 - MPMX20_04465 0.12 -0.8 4,669,743 + MPMX20_04465 0.22 -1.2 4,669,769 - MPMX20_04465 0.24 -2.1 4,669,769 - MPMX20_04465 0.24 -2.1 4,669,774 + MPMX20_04465 0.25 -0.3 4,669,787 - MPMX20_04465 0.26 -1.1 4,669,851 - MPMX20_04465 0.34 -0.7 4,669,862 + MPMX20_04465 0.35 -0.8 4,669,862 + MPMX20_04465 0.35 -1.7 4,669,867 + MPMX20_04465 0.35 +3.5 4,669,870 - MPMX20_04465 0.36 -1.1 4,669,875 - MPMX20_04465 0.36 +0.1 4,669,927 + MPMX20_04465 0.42 -0.9 4,669,999 - MPMX20_04465 0.50 -1.3 4,669,999 - MPMX20_04465 0.50 -0.2 4,669,999 - MPMX20_04465 0.50 -2.4 4,670,022 - MPMX20_04465 0.52 -1.1 4,670,022 - MPMX20_04465 0.52 -1.9 4,670,040 + MPMX20_04465 0.54 -1.1 4,670,136 - MPMX20_04465 0.65 -2.0 4,670,169 - MPMX20_04465 0.69 -1.3 4,670,180 - MPMX20_04465 0.70 +0.5 4,670,197 + MPMX20_04465 0.72 -2.0 4,670,240 - MPMX20_04465 0.77 -0.3 4,670,371 + -0.1 4,670,385 - +1.9 4,670,404 - -0.4 4,670,404 - -2.2 4,670,404 - -1.1 4,670,481 + -1.9 4,670,493 - +0.6 4,670,518 - MPMX20_04466 0.10 -2.0 4,670,535 - MPMX20_04466 0.12 -0.9 4,670,561 + MPMX20_04466 0.16 -3.1 4,670,652 - MPMX20_04466 0.29 -0.7 4,670,662 + MPMX20_04466 0.30 -0.3 4,670,746 - MPMX20_04466 0.42 -0.3 4,670,757 - MPMX20_04466 0.44 +0.2 4,670,788 + MPMX20_04466 0.48 -0.7 4,670,852 + MPMX20_04466 0.57 -1.7 4,671,009 - MPMX20_04466 0.79 -0.9 4,671,194 + +0.0 4,671,194 + -1.2 4,671,194 + -1.8 4,671,194 + -2.0 4,671,194 + -2.1 4,671,202 - -0.5 4,671,202 - +0.5 4,671,211 + +0.9 4,671,219 - -0.4 4,671,280 + MPMX20_04467 0.16 -0.8 4,671,288 - MPMX20_04467 0.17 -2.4 4,671,288 - MPMX20_04467 0.17 +0.5 4,671,288 - MPMX20_04467 0.17 -1.8 4,671,462 - MPMX20_04467 0.38 +0.6 4,671,474 + MPMX20_04467 0.39 -1.7 4,671,503 + MPMX20_04467 0.43 -0.8 4,671,526 + MPMX20_04467 0.45 -0.4 4,671,534 - MPMX20_04467 0.46 -0.9 4,671,534 - MPMX20_04467 0.46 -0.4 4,671,595 + MPMX20_04467 0.54 +0.7 4,671,596 + MPMX20_04467 0.54 -0.7 4,671,611 - MPMX20_04467 0.56 +0.1 4,671,653 + MPMX20_04467 0.61 -0.1 4,671,740 - MPMX20_04467 0.71 +0.1 4,671,776 - MPMX20_04467 0.76 -2.2 4,671,776 - MPMX20_04467 0.76 -0.3 4,671,841 - MPMX20_04467 0.84 +0.8 4,671,866 - MPMX20_04467 0.87 -2.0 4,671,891 + MPMX20_04467 0.90 -1.1 4,672,073 + -1.6 4,672,081 - +0.2 4,672,081 - +0.5 4,672,093 + +0.5 4,672,101 - +0.3 4,672,101 - +0.3 4,672,141 + +0.2 4,672,151 + -0.9 4,672,151 + -0.4 4,672,151 + -0.4
Or see this region's nucleotide sequence