Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04463 and MPMX20_04464 are separated by 80 nucleotides MPMX20_04464 and MPMX20_04465 overlap by 1 nucleotides MPMX20_04465 and MPMX20_04466 overlap by 4 nucleotides MPMX20_04466 and MPMX20_04467 overlap by 4 nucleotides
MPMX20_04463: MPMX20_04463 - DNA helicase II, at 4,666,589 to 4,668,751
_04463
MPMX20_04464: MPMX20_04464 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,668,832 to 4,669,548
_04464
MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450
_04465
MPMX20_04466: MPMX20_04466 - hypothetical protein, at 4,670,447 to 4,671,154
_04466
MPMX20_04467: MPMX20_04467 - Diaminopimelate epimerase, at 4,671,151 to 4,671,975
_04467
Position (kb)
4669
4670
4671 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4668.599 kb on + strand at 4668.668 kb on - strand at 4668.736 kb on + strand at 4668.879 kb on + strand at 4668.910 kb on - strand, within MPMX20_04464 at 4668.989 kb on - strand, within MPMX20_04464 at 4669.122 kb on + strand, within MPMX20_04464 at 4669.130 kb on - strand, within MPMX20_04464 at 4669.251 kb on + strand, within MPMX20_04464 at 4669.251 kb on + strand, within MPMX20_04464 at 4669.259 kb on - strand, within MPMX20_04464 at 4669.259 kb on - strand, within MPMX20_04464 at 4669.259 kb on - strand, within MPMX20_04464 at 4669.284 kb on + strand, within MPMX20_04464 at 4669.324 kb on - strand, within MPMX20_04464 at 4669.356 kb on - strand, within MPMX20_04464 at 4669.369 kb on + strand, within MPMX20_04464 at 4669.408 kb on + strand, within MPMX20_04464 at 4669.439 kb on - strand, within MPMX20_04464 at 4669.457 kb on + strand, within MPMX20_04464 at 4669.470 kb on - strand, within MPMX20_04464 at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.508 kb on - strand at 4669.520 kb on - strand at 4669.534 kb on - strand at 4669.618 kb on + strand at 4669.618 kb on + strand at 4669.626 kb on - strand at 4669.650 kb on + strand, within MPMX20_04465 at 4669.658 kb on - strand, within MPMX20_04465 at 4669.743 kb on + strand, within MPMX20_04465 at 4669.769 kb on - strand, within MPMX20_04465 at 4669.769 kb on - strand, within MPMX20_04465 at 4669.774 kb on + strand, within MPMX20_04465 at 4669.787 kb on - strand, within MPMX20_04465 at 4669.851 kb on - strand, within MPMX20_04465 at 4669.862 kb on + strand, within MPMX20_04465 at 4669.862 kb on + strand, within MPMX20_04465 at 4669.867 kb on + strand, within MPMX20_04465 at 4669.870 kb on - strand, within MPMX20_04465 at 4669.875 kb on - strand, within MPMX20_04465 at 4669.927 kb on + strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4669.999 kb on - strand, within MPMX20_04465 at 4670.022 kb on - strand, within MPMX20_04465 at 4670.022 kb on - strand, within MPMX20_04465 at 4670.040 kb on + strand, within MPMX20_04465 at 4670.136 kb on - strand, within MPMX20_04465 at 4670.169 kb on - strand, within MPMX20_04465 at 4670.180 kb on - strand, within MPMX20_04465 at 4670.197 kb on + strand, within MPMX20_04465 at 4670.240 kb on - strand, within MPMX20_04465 at 4670.371 kb on + strand at 4670.385 kb on - strand at 4670.404 kb on - strand at 4670.404 kb on - strand at 4670.404 kb on - strand at 4670.481 kb on + strand at 4670.493 kb on - strand at 4670.518 kb on - strand, within MPMX20_04466 at 4670.535 kb on - strand, within MPMX20_04466 at 4670.561 kb on + strand, within MPMX20_04466 at 4670.652 kb on - strand, within MPMX20_04466 at 4670.662 kb on + strand, within MPMX20_04466 at 4670.746 kb on - strand, within MPMX20_04466 at 4670.757 kb on - strand, within MPMX20_04466 at 4670.788 kb on + strand, within MPMX20_04466 at 4670.852 kb on + strand, within MPMX20_04466 at 4671.009 kb on - strand, within MPMX20_04466 at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.194 kb on + strand at 4671.202 kb on - strand at 4671.202 kb on - strand at 4671.211 kb on + strand at 4671.219 kb on - strand at 4671.280 kb on + strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467 at 4671.288 kb on - strand, within MPMX20_04467
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,668,599 + -1.4 4,668,668 - -1.3 4,668,736 + -1.0 4,668,879 + +0.5 4,668,910 - MPMX20_04464 0.11 -1.1 4,668,989 - MPMX20_04464 0.22 -0.5 4,669,122 + MPMX20_04464 0.40 -1.3 4,669,130 - MPMX20_04464 0.42 +0.7 4,669,251 + MPMX20_04464 0.58 -0.4 4,669,251 + MPMX20_04464 0.58 +0.1 4,669,259 - MPMX20_04464 0.60 -0.1 4,669,259 - MPMX20_04464 0.60 -0.1 4,669,259 - MPMX20_04464 0.60 -0.1 4,669,284 + MPMX20_04464 0.63 -2.6 4,669,324 - MPMX20_04464 0.69 -1.4 4,669,356 - MPMX20_04464 0.73 +0.6 4,669,369 + MPMX20_04464 0.75 -1.1 4,669,408 + MPMX20_04464 0.80 -1.6 4,669,439 - MPMX20_04464 0.85 +1.5 4,669,457 + MPMX20_04464 0.87 +1.4 4,669,470 - MPMX20_04464 0.89 -0.4 4,669,508 - -0.0 4,669,508 - -1.4 4,669,508 - +0.2 4,669,520 - +0.5 4,669,534 - -0.0 4,669,618 + -2.6 4,669,618 + -1.7 4,669,626 - -1.3 4,669,650 + MPMX20_04465 0.11 -1.0 4,669,658 - MPMX20_04465 0.12 -0.8 4,669,743 + MPMX20_04465 0.22 -1.2 4,669,769 - MPMX20_04465 0.24 -2.1 4,669,769 - MPMX20_04465 0.24 -2.1 4,669,774 + MPMX20_04465 0.25 -0.3 4,669,787 - MPMX20_04465 0.26 -1.1 4,669,851 - MPMX20_04465 0.34 -0.7 4,669,862 + MPMX20_04465 0.35 -0.8 4,669,862 + MPMX20_04465 0.35 -1.7 4,669,867 + MPMX20_04465 0.35 +3.5 4,669,870 - MPMX20_04465 0.36 -1.1 4,669,875 - MPMX20_04465 0.36 +0.1 4,669,927 + MPMX20_04465 0.42 -0.9 4,669,999 - MPMX20_04465 0.50 -1.3 4,669,999 - MPMX20_04465 0.50 -0.2 4,669,999 - MPMX20_04465 0.50 -2.4 4,670,022 - MPMX20_04465 0.52 -1.1 4,670,022 - MPMX20_04465 0.52 -1.9 4,670,040 + MPMX20_04465 0.54 -1.1 4,670,136 - MPMX20_04465 0.65 -2.0 4,670,169 - MPMX20_04465 0.69 -1.3 4,670,180 - MPMX20_04465 0.70 +0.5 4,670,197 + MPMX20_04465 0.72 -2.0 4,670,240 - MPMX20_04465 0.77 -0.3 4,670,371 + -0.1 4,670,385 - +1.9 4,670,404 - -0.4 4,670,404 - -2.2 4,670,404 - -1.1 4,670,481 + -1.9 4,670,493 - +0.6 4,670,518 - MPMX20_04466 0.10 -2.0 4,670,535 - MPMX20_04466 0.12 -0.9 4,670,561 + MPMX20_04466 0.16 -3.1 4,670,652 - MPMX20_04466 0.29 -0.7 4,670,662 + MPMX20_04466 0.30 -0.3 4,670,746 - MPMX20_04466 0.42 -0.3 4,670,757 - MPMX20_04466 0.44 +0.2 4,670,788 + MPMX20_04466 0.48 -0.7 4,670,852 + MPMX20_04466 0.57 -1.7 4,671,009 - MPMX20_04466 0.79 -0.9 4,671,194 + +0.0 4,671,194 + -1.2 4,671,194 + -1.8 4,671,194 + -2.0 4,671,194 + -2.1 4,671,202 - -0.5 4,671,202 - +0.5 4,671,211 + +0.9 4,671,219 - -0.4 4,671,280 + MPMX20_04467 0.16 -0.8 4,671,288 - MPMX20_04467 0.17 -2.4 4,671,288 - MPMX20_04467 0.17 +0.5 4,671,288 - MPMX20_04467 0.17 -1.8
Or see this region's nucleotide sequence