Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04441 and MPMX20_04442 are separated by 41 nucleotides MPMX20_04442 and MPMX20_04443 are separated by 2 nucleotides MPMX20_04443 and MPMX20_04444 are separated by 3 nucleotides MPMX20_04444 and MPMX20_04445 are separated by 76 nucleotides
MPMX20_04441: MPMX20_04441 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,644,421 to 4,645,203
_04441
MPMX20_04442: MPMX20_04442 - Sec-independent protein translocase protein TatC, at 4,645,245 to 4,646,015
_04442
MPMX20_04443: MPMX20_04443 - Sec-independent protein translocase protein TatB, at 4,646,018 to 4,646,560
_04443
MPMX20_04444: MPMX20_04444 - Sec-independent protein translocase protein TatA, at 4,646,564 to 4,646,818
_04444
MPMX20_04445: MPMX20_04445 - putative protein kinase UbiB, at 4,646,895 to 4,648,535
_04445
Position (kb)
4646
4647 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4645.046 kb on + strand, within MPMX20_04441 at 4645.120 kb on - strand, within MPMX20_04441 at 4645.146 kb on - strand at 4645.182 kb on + strand at 4645.182 kb on + strand at 4645.185 kb on - strand at 4645.190 kb on - strand at 4645.223 kb on - strand at 4645.242 kb on + strand at 4645.341 kb on - strand, within MPMX20_04442 at 4645.343 kb on + strand, within MPMX20_04442 at 4645.435 kb on - strand, within MPMX20_04442 at 4645.451 kb on + strand, within MPMX20_04442 at 4645.459 kb on + strand, within MPMX20_04442 at 4645.477 kb on - strand, within MPMX20_04442 at 4645.477 kb on - strand, within MPMX20_04442 at 4645.560 kb on + strand, within MPMX20_04442 at 4645.575 kb on + strand, within MPMX20_04442 at 4645.617 kb on + strand, within MPMX20_04442 at 4645.619 kb on - strand, within MPMX20_04442 at 4645.644 kb on - strand, within MPMX20_04442 at 4645.665 kb on - strand, within MPMX20_04442 at 4645.737 kb on + strand, within MPMX20_04442 at 4645.737 kb on + strand, within MPMX20_04442 at 4645.849 kb on - strand, within MPMX20_04442 at 4645.893 kb on - strand, within MPMX20_04442 at 4645.970 kb on + strand at 4645.978 kb on - strand at 4646.215 kb on - strand, within MPMX20_04443 at 4646.342 kb on - strand, within MPMX20_04443 at 4646.401 kb on - strand, within MPMX20_04443 at 4646.457 kb on - strand, within MPMX20_04443 at 4646.457 kb on - strand, within MPMX20_04443 at 4646.457 kb on - strand, within MPMX20_04443 at 4646.514 kb on - strand at 4646.562 kb on + strand at 4646.562 kb on + strand at 4646.635 kb on - strand, within MPMX20_04444 at 4646.661 kb on + strand, within MPMX20_04444 at 4646.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,645,046 + MPMX20_04441 0.80 -0.8 4,645,120 - MPMX20_04441 0.89 +0.3 4,645,146 - -0.5 4,645,182 + -2.3 4,645,182 + +1.4 4,645,185 - -0.4 4,645,190 - -1.8 4,645,223 - +1.5 4,645,242 + -1.0 4,645,341 - MPMX20_04442 0.12 -3.3 4,645,343 + MPMX20_04442 0.13 -3.5 4,645,435 - MPMX20_04442 0.25 -0.4 4,645,451 + MPMX20_04442 0.27 -2.1 4,645,459 + MPMX20_04442 0.28 -2.8 4,645,477 - MPMX20_04442 0.30 -1.9 4,645,477 - MPMX20_04442 0.30 -1.4 4,645,560 + MPMX20_04442 0.41 -1.1 4,645,575 + MPMX20_04442 0.43 -2.5 4,645,617 + MPMX20_04442 0.48 -1.6 4,645,619 - MPMX20_04442 0.49 -2.2 4,645,644 - MPMX20_04442 0.52 -3.9 4,645,665 - MPMX20_04442 0.54 -1.9 4,645,737 + MPMX20_04442 0.64 -1.1 4,645,737 + MPMX20_04442 0.64 -0.9 4,645,849 - MPMX20_04442 0.78 -3.8 4,645,893 - MPMX20_04442 0.84 -2.3 4,645,970 + -0.1 4,645,978 - -2.0 4,646,215 - MPMX20_04443 0.36 -0.7 4,646,342 - MPMX20_04443 0.60 -0.9 4,646,401 - MPMX20_04443 0.71 -0.7 4,646,457 - MPMX20_04443 0.81 +0.2 4,646,457 - MPMX20_04443 0.81 -3.4 4,646,457 - MPMX20_04443 0.81 -1.6 4,646,514 - +1.9 4,646,562 + -0.4 4,646,562 + -2.1 4,646,635 - MPMX20_04444 0.28 -3.3 4,646,661 + MPMX20_04444 0.38 -2.6 4,646,821 - -0.9
Or see this region's nucleotide sequence