Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04439 and MPMX20_04440 are separated by 170 nucleotides MPMX20_04440 and MPMX20_04441 overlap by 4 nucleotides MPMX20_04441 and MPMX20_04442 are separated by 41 nucleotides
MPMX20_04439: MPMX20_04439 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,642,257 to 4,643,762
_04439
MPMX20_04440: MPMX20_04440 - Transcription antitermination protein RfaH, at 4,643,933 to 4,644,424
_04440
MPMX20_04441: MPMX20_04441 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,644,421 to 4,645,203
_04441
MPMX20_04442: MPMX20_04442 - Sec-independent protein translocase protein TatC, at 4,645,245 to 4,646,015
_04442
Position (kb)
4643
4644
4645 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4643.781 kb on + strand at 4643.791 kb on + strand at 4643.791 kb on + strand at 4643.799 kb on - strand at 4643.801 kb on + strand at 4643.809 kb on - strand at 4643.809 kb on - strand at 4643.855 kb on - strand at 4643.947 kb on - strand at 4643.971 kb on + strand at 4643.975 kb on - strand at 4644.026 kb on - strand, within MPMX20_04440 at 4644.153 kb on + strand, within MPMX20_04440 at 4644.291 kb on + strand, within MPMX20_04440 at 4644.359 kb on - strand, within MPMX20_04440 at 4644.383 kb on + strand at 4644.383 kb on + strand at 4644.402 kb on + strand at 4644.419 kb on + strand at 4644.419 kb on + strand at 4644.489 kb on + strand at 4644.501 kb on + strand, within MPMX20_04441 at 4644.522 kb on + strand, within MPMX20_04441 at 4644.637 kb on - strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.648 kb on + strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.656 kb on - strand, within MPMX20_04441 at 4644.693 kb on + strand, within MPMX20_04441 at 4644.701 kb on - strand, within MPMX20_04441 at 4644.715 kb on + strand, within MPMX20_04441 at 4644.738 kb on + strand, within MPMX20_04441 at 4644.753 kb on + strand, within MPMX20_04441 at 4644.813 kb on + strand, within MPMX20_04441 at 4644.832 kb on - strand, within MPMX20_04441 at 4644.986 kb on - strand, within MPMX20_04441 at 4645.046 kb on + strand, within MPMX20_04441 at 4645.120 kb on - strand, within MPMX20_04441 at 4645.146 kb on - strand at 4645.182 kb on + strand at 4645.182 kb on + strand at 4645.185 kb on - strand at 4645.190 kb on - strand at 4645.223 kb on - strand at 4645.242 kb on + strand at 4645.341 kb on - strand, within MPMX20_04442 at 4645.343 kb on + strand, within MPMX20_04442
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,643,781 + -0.1 4,643,791 + -0.9 4,643,791 + -0.7 4,643,799 - +0.9 4,643,801 + +0.5 4,643,809 - +1.5 4,643,809 - -2.2 4,643,855 - -2.2 4,643,947 - -1.3 4,643,971 + +0.3 4,643,975 - -1.3 4,644,026 - MPMX20_04440 0.19 -2.9 4,644,153 + MPMX20_04440 0.45 +1.5 4,644,291 + MPMX20_04440 0.73 -0.9 4,644,359 - MPMX20_04440 0.87 +0.3 4,644,383 + +0.3 4,644,383 + -2.1 4,644,402 + -0.8 4,644,419 + +0.8 4,644,419 + -1.0 4,644,489 + +0.8 4,644,501 + MPMX20_04441 0.10 +0.3 4,644,522 + MPMX20_04441 0.13 +0.4 4,644,637 - MPMX20_04441 0.28 +0.3 4,644,648 + MPMX20_04441 0.29 +1.0 4,644,648 + MPMX20_04441 0.29 -0.7 4,644,648 + MPMX20_04441 0.29 -0.8 4,644,656 - MPMX20_04441 0.30 -0.4 4,644,656 - MPMX20_04441 0.30 -0.2 4,644,656 - MPMX20_04441 0.30 +0.5 4,644,693 + MPMX20_04441 0.35 +0.2 4,644,701 - MPMX20_04441 0.36 -1.0 4,644,715 + MPMX20_04441 0.38 -0.5 4,644,738 + MPMX20_04441 0.40 -1.9 4,644,753 + MPMX20_04441 0.42 +1.5 4,644,813 + MPMX20_04441 0.50 -0.0 4,644,832 - MPMX20_04441 0.52 -0.4 4,644,986 - MPMX20_04441 0.72 +1.2 4,645,046 + MPMX20_04441 0.80 -0.8 4,645,120 - MPMX20_04441 0.89 +0.3 4,645,146 - -0.5 4,645,182 + -2.3 4,645,182 + +1.4 4,645,185 - -0.4 4,645,190 - -1.8 4,645,223 - +1.5 4,645,242 + -1.0 4,645,341 - MPMX20_04442 0.12 -3.3 4,645,343 + MPMX20_04442 0.13 -3.5
Or see this region's nucleotide sequence