Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04299 and MPMX20_04300 are separated by 36 nucleotides MPMX20_04300 and MPMX20_04301 are separated by 61 nucleotides MPMX20_04301 and MPMX20_04302 are separated by 307 nucleotides
MPMX20_04299: MPMX20_04299 - Pimeloyl-[acyl-carrier protein] methyl ester esterase, at 4,484,475 to 4,485,248
_04299
MPMX20_04300: MPMX20_04300 - Putative ribose-phosphate pyrophosphokinase, at 4,485,285 to 4,485,968
_04300
MPMX20_04301: MPMX20_04301 - Fe/S biogenesis protein NfuA, at 4,486,030 to 4,486,605
_04301
MPMX20_04302: MPMX20_04302 - High-affinity gluconate transporter, at 4,486,913 to 4,488,229
_04302
Position (kb)
4486
4487 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4485.039 kb on + strand, within MPMX20_04299 at 4485.047 kb on - strand, within MPMX20_04299 at 4485.179 kb on + strand at 4485.218 kb on + strand at 4485.218 kb on + strand at 4485.251 kb on - strand at 4485.284 kb on + strand at 4485.286 kb on + strand at 4485.294 kb on - strand at 4485.294 kb on - strand at 4485.324 kb on + strand at 4485.365 kb on - strand, within MPMX20_04300 at 4485.519 kb on - strand, within MPMX20_04300 at 4485.548 kb on + strand, within MPMX20_04300 at 4485.554 kb on - strand, within MPMX20_04300 at 4485.650 kb on - strand, within MPMX20_04300 at 4485.736 kb on - strand, within MPMX20_04300 at 4485.877 kb on + strand, within MPMX20_04300 at 4485.885 kb on - strand, within MPMX20_04300 at 4485.948 kb on + strand at 4485.961 kb on - strand at 4486.209 kb on + strand, within MPMX20_04301 at 4486.209 kb on + strand, within MPMX20_04301 at 4486.209 kb on + strand, within MPMX20_04301 at 4486.209 kb on + strand, within MPMX20_04301 at 4486.217 kb on - strand, within MPMX20_04301 at 4486.217 kb on - strand, within MPMX20_04301 at 4486.230 kb on + strand, within MPMX20_04301 at 4486.266 kb on - strand, within MPMX20_04301 at 4486.548 kb on + strand at 4486.556 kb on - strand at 4486.556 kb on - strand at 4486.556 kb on - strand at 4486.638 kb on - strand at 4486.674 kb on + strand at 4486.687 kb on - strand at 4486.762 kb on + strand at 4486.772 kb on + strand at 4486.938 kb on + strand at 4486.996 kb on + strand at 4487.004 kb on - strand at 4487.041 kb on + strand at 4487.049 kb on - strand, within MPMX20_04302 at 4487.083 kb on + strand, within MPMX20_04302 at 4487.091 kb on + strand, within MPMX20_04302 at 4487.099 kb on - strand, within MPMX20_04302 at 4487.099 kb on - strand, within MPMX20_04302 at 4487.173 kb on - strand, within MPMX20_04302 at 4487.248 kb on + strand, within MPMX20_04302 at 4487.248 kb on + strand, within MPMX20_04302 at 4487.256 kb on - strand, within MPMX20_04302 at 4487.256 kb on - strand, within MPMX20_04302 at 4487.256 kb on - strand, within MPMX20_04302 at 4487.256 kb on - strand, within MPMX20_04302 at 4487.256 kb on - strand, within MPMX20_04302 at 4487.258 kb on - strand, within MPMX20_04302 at 4487.285 kb on + strand, within MPMX20_04302 at 4487.316 kb on - strand, within MPMX20_04302 at 4487.320 kb on + strand, within MPMX20_04302 at 4487.320 kb on + strand, within MPMX20_04302 at 4487.320 kb on + strand, within MPMX20_04302 at 4487.341 kb on - strand, within MPMX20_04302 at 4487.410 kb on + strand, within MPMX20_04302 at 4487.425 kb on + strand, within MPMX20_04302 at 4487.425 kb on + strand, within MPMX20_04302 at 4487.425 kb on + strand, within MPMX20_04302 at 4487.425 kb on + strand, within MPMX20_04302 at 4487.531 kb on + strand, within MPMX20_04302 at 4487.531 kb on + strand, within MPMX20_04302 at 4487.531 kb on + strand, within MPMX20_04302 at 4487.531 kb on + strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302 at 4487.539 kb on - strand, within MPMX20_04302
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,485,039 + MPMX20_04299 0.73 -2.1 4,485,047 - MPMX20_04299 0.74 -2.1 4,485,179 + -0.5 4,485,218 + +1.6 4,485,218 + -1.7 4,485,251 - -0.5 4,485,284 + -0.3 4,485,286 + -0.2 4,485,294 - +4.2 4,485,294 - +1.2 4,485,324 + +0.3 4,485,365 - MPMX20_04300 0.12 +4.2 4,485,519 - MPMX20_04300 0.34 -0.1 4,485,548 + MPMX20_04300 0.38 +0.9 4,485,554 - MPMX20_04300 0.39 -0.2 4,485,650 - MPMX20_04300 0.53 +0.6 4,485,736 - MPMX20_04300 0.66 -0.6 4,485,877 + MPMX20_04300 0.87 +0.6 4,485,885 - MPMX20_04300 0.88 -0.2 4,485,948 + +0.3 4,485,961 - -0.1 4,486,209 + MPMX20_04301 0.31 -3.2 4,486,209 + MPMX20_04301 0.31 -2.0 4,486,209 + MPMX20_04301 0.31 +0.9 4,486,209 + MPMX20_04301 0.31 -1.8 4,486,217 - MPMX20_04301 0.32 +0.0 4,486,217 - MPMX20_04301 0.32 -1.4 4,486,230 + MPMX20_04301 0.35 -1.3 4,486,266 - MPMX20_04301 0.41 +0.1 4,486,548 + -1.1 4,486,556 - -0.5 4,486,556 - -1.5 4,486,556 - -0.8 4,486,638 - +0.2 4,486,674 + -0.3 4,486,687 - -0.0 4,486,762 + +0.6 4,486,772 + -0.4 4,486,938 + -0.5 4,486,996 + -0.7 4,487,004 - -0.1 4,487,041 + +1.1 4,487,049 - MPMX20_04302 0.10 +1.0 4,487,083 + MPMX20_04302 0.13 +0.7 4,487,091 + MPMX20_04302 0.14 -0.4 4,487,099 - MPMX20_04302 0.14 -0.3 4,487,099 - MPMX20_04302 0.14 -0.3 4,487,173 - MPMX20_04302 0.20 +0.4 4,487,248 + MPMX20_04302 0.25 +0.7 4,487,248 + MPMX20_04302 0.25 -0.3 4,487,256 - MPMX20_04302 0.26 -0.1 4,487,256 - MPMX20_04302 0.26 +0.3 4,487,256 - MPMX20_04302 0.26 -0.1 4,487,256 - MPMX20_04302 0.26 +3.2 4,487,256 - MPMX20_04302 0.26 +0.0 4,487,258 - MPMX20_04302 0.26 -0.4 4,487,285 + MPMX20_04302 0.28 +2.1 4,487,316 - MPMX20_04302 0.31 +1.2 4,487,320 + MPMX20_04302 0.31 -3.3 4,487,320 + MPMX20_04302 0.31 -0.4 4,487,320 + MPMX20_04302 0.31 -0.5 4,487,341 - MPMX20_04302 0.32 +0.9 4,487,410 + MPMX20_04302 0.38 -0.3 4,487,425 + MPMX20_04302 0.39 -0.5 4,487,425 + MPMX20_04302 0.39 +0.9 4,487,425 + MPMX20_04302 0.39 -0.4 4,487,425 + MPMX20_04302 0.39 +0.2 4,487,531 + MPMX20_04302 0.47 +0.3 4,487,531 + MPMX20_04302 0.47 -0.2 4,487,531 + MPMX20_04302 0.47 -1.3 4,487,531 + MPMX20_04302 0.47 +0.1 4,487,539 - MPMX20_04302 0.48 +0.8 4,487,539 - MPMX20_04302 0.48 -2.2 4,487,539 - MPMX20_04302 0.48 -0.0 4,487,539 - MPMX20_04302 0.48 +0.7 4,487,539 - MPMX20_04302 0.48 +0.9 4,487,539 - MPMX20_04302 0.48 +0.1 4,487,539 - MPMX20_04302 0.48 +0.0 4,487,539 - MPMX20_04302 0.48 +0.7 4,487,539 - MPMX20_04302 0.48 +0.3
Or see this region's nucleotide sequence