Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04273 and MPMX20_04274 overlap by 8 nucleotides MPMX20_04274 and MPMX20_04275 overlap by 8 nucleotides MPMX20_04275 and MPMX20_04276 are separated by 41 nucleotides MPMX20_04276 and MPMX20_04277 are separated by 67 nucleotides
MPMX20_04273: MPMX20_04273 - Tryptophan--tRNA ligase, at 4,455,935 to 4,456,939
_04273
MPMX20_04274: MPMX20_04274 - Phosphoglycolate phosphatase, at 4,456,932 to 4,457,693
_04274
MPMX20_04275: MPMX20_04275 - Ribulose-phosphate 3-epimerase, at 4,457,686 to 4,458,363
_04275
MPMX20_04276: MPMX20_04276 - DNA adenine methylase, at 4,458,405 to 4,459,217
_04276
MPMX20_04277: MPMX20_04277 - Cell division protein DamX, at 4,459,285 to 4,460,595
_04277
Position (kb)
4457
4458
4459 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4456.752 kb on - strand, within MPMX20_04273 at 4456.772 kb on - strand, within MPMX20_04273 at 4456.872 kb on + strand at 4456.872 kb on + strand at 4456.872 kb on + strand at 4456.880 kb on - strand at 4456.880 kb on - strand at 4456.892 kb on + strand at 4456.907 kb on - strand at 4456.924 kb on - strand at 4456.964 kb on + strand at 4457.027 kb on + strand, within MPMX20_04274 at 4457.122 kb on + strand, within MPMX20_04274 at 4457.127 kb on + strand, within MPMX20_04274 at 4457.177 kb on + strand, within MPMX20_04274 at 4457.196 kb on + strand, within MPMX20_04274 at 4457.252 kb on - strand, within MPMX20_04274 at 4457.335 kb on - strand, within MPMX20_04274 at 4457.359 kb on + strand, within MPMX20_04274 at 4457.418 kb on - strand, within MPMX20_04274 at 4457.457 kb on + strand, within MPMX20_04274 at 4457.457 kb on + strand, within MPMX20_04274 at 4457.457 kb on + strand, within MPMX20_04274 at 4457.458 kb on + strand, within MPMX20_04274 at 4457.466 kb on - strand, within MPMX20_04274 at 4457.466 kb on - strand, within MPMX20_04274 at 4457.466 kb on - strand, within MPMX20_04274 at 4457.582 kb on + strand, within MPMX20_04274 at 4457.582 kb on + strand, within MPMX20_04274 at 4457.582 kb on + strand, within MPMX20_04274 at 4457.590 kb on + strand, within MPMX20_04274 at 4457.590 kb on - strand, within MPMX20_04274 at 4457.590 kb on - strand, within MPMX20_04274 at 4457.606 kb on + strand, within MPMX20_04274 at 4457.616 kb on + strand, within MPMX20_04274 at 4457.616 kb on + strand, within MPMX20_04274 at 4457.616 kb on + strand, within MPMX20_04274 at 4457.624 kb on - strand at 4457.634 kb on + strand at 4457.693 kb on + strand at 4457.760 kb on - strand, within MPMX20_04275 at 4457.784 kb on - strand, within MPMX20_04275 at 4457.851 kb on + strand, within MPMX20_04275 at 4457.995 kb on - strand, within MPMX20_04275 at 4458.049 kb on + strand, within MPMX20_04275 at 4458.070 kb on - strand, within MPMX20_04275 at 4458.072 kb on + strand, within MPMX20_04275 at 4458.210 kb on + strand, within MPMX20_04275 at 4458.244 kb on - strand, within MPMX20_04275 at 4458.301 kb on + strand at 4458.309 kb on - strand at 4458.411 kb on - strand at 4458.411 kb on - strand at 4458.411 kb on - strand at 4458.502 kb on + strand, within MPMX20_04276 at 4458.521 kb on + strand, within MPMX20_04276 at 4458.529 kb on - strand, within MPMX20_04276 at 4458.600 kb on - strand, within MPMX20_04276 at 4458.619 kb on - strand, within MPMX20_04276 at 4458.654 kb on + strand, within MPMX20_04276 at 4458.682 kb on - strand, within MPMX20_04276 at 4458.719 kb on + strand, within MPMX20_04276 at 4458.775 kb on + strand, within MPMX20_04276 at 4458.820 kb on + strand, within MPMX20_04276 at 4458.839 kb on + strand, within MPMX20_04276 at 4458.849 kb on + strand, within MPMX20_04276 at 4458.872 kb on + strand, within MPMX20_04276 at 4458.883 kb on + strand, within MPMX20_04276 at 4458.891 kb on - strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.970 kb on + strand, within MPMX20_04276 at 4458.978 kb on - strand, within MPMX20_04276 at 4458.978 kb on - strand, within MPMX20_04276 at 4458.988 kb on - strand, within MPMX20_04276 at 4458.999 kb on - strand, within MPMX20_04276 at 4459.026 kb on + strand, within MPMX20_04276 at 4459.028 kb on + strand, within MPMX20_04276 at 4459.033 kb on + strand, within MPMX20_04276 at 4459.036 kb on - strand, within MPMX20_04276 at 4459.036 kb on - strand, within MPMX20_04276 at 4459.058 kb on - strand, within MPMX20_04276 at 4459.221 kb on + strand at 4459.237 kb on - strand at 4459.237 kb on - strand at 4459.298 kb on + strand at 4459.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,456,752 - MPMX20_04273 0.81 -2.1 4,456,772 - MPMX20_04273 0.83 +1.8 4,456,872 + -0.2 4,456,872 + +1.3 4,456,872 + -2.2 4,456,880 - -0.4 4,456,880 - +0.4 4,456,892 + +0.3 4,456,907 - -0.1 4,456,924 - -0.2 4,456,964 + -0.8 4,457,027 + MPMX20_04274 0.12 -0.4 4,457,122 + MPMX20_04274 0.25 -0.2 4,457,127 + MPMX20_04274 0.26 -0.2 4,457,177 + MPMX20_04274 0.32 +1.6 4,457,196 + MPMX20_04274 0.35 -0.2 4,457,252 - MPMX20_04274 0.42 -1.2 4,457,335 - MPMX20_04274 0.53 +0.8 4,457,359 + MPMX20_04274 0.56 -0.5 4,457,418 - MPMX20_04274 0.64 -1.0 4,457,457 + MPMX20_04274 0.69 +0.1 4,457,457 + MPMX20_04274 0.69 -0.2 4,457,457 + MPMX20_04274 0.69 -1.6 4,457,458 + MPMX20_04274 0.69 -0.2 4,457,466 - MPMX20_04274 0.70 +0.3 4,457,466 - MPMX20_04274 0.70 +0.6 4,457,466 - MPMX20_04274 0.70 -3.6 4,457,582 + MPMX20_04274 0.85 -0.1 4,457,582 + MPMX20_04274 0.85 -0.0 4,457,582 + MPMX20_04274 0.85 +4.2 4,457,590 + MPMX20_04274 0.86 -0.8 4,457,590 - MPMX20_04274 0.86 -1.3 4,457,590 - MPMX20_04274 0.86 +0.0 4,457,606 + MPMX20_04274 0.88 -0.5 4,457,616 + MPMX20_04274 0.90 -0.1 4,457,616 + MPMX20_04274 0.90 +0.2 4,457,616 + MPMX20_04274 0.90 +0.0 4,457,624 - +1.2 4,457,634 + -0.7 4,457,693 + +1.8 4,457,760 - MPMX20_04275 0.11 +1.8 4,457,784 - MPMX20_04275 0.14 +0.4 4,457,851 + MPMX20_04275 0.24 +0.3 4,457,995 - MPMX20_04275 0.46 -0.7 4,458,049 + MPMX20_04275 0.54 +0.0 4,458,070 - MPMX20_04275 0.57 -0.5 4,458,072 + MPMX20_04275 0.57 -1.0 4,458,210 + MPMX20_04275 0.77 -1.2 4,458,244 - MPMX20_04275 0.82 -2.5 4,458,301 + +0.8 4,458,309 - -1.5 4,458,411 - -0.7 4,458,411 - -0.3 4,458,411 - +0.0 4,458,502 + MPMX20_04276 0.12 +0.3 4,458,521 + MPMX20_04276 0.14 -2.0 4,458,529 - MPMX20_04276 0.15 -1.0 4,458,600 - MPMX20_04276 0.24 -1.5 4,458,619 - MPMX20_04276 0.26 -0.1 4,458,654 + MPMX20_04276 0.31 -0.2 4,458,682 - MPMX20_04276 0.34 -1.3 4,458,719 + MPMX20_04276 0.39 +0.3 4,458,775 + MPMX20_04276 0.46 -0.3 4,458,820 + MPMX20_04276 0.51 +2.4 4,458,839 + MPMX20_04276 0.53 -2.1 4,458,849 + MPMX20_04276 0.55 -1.3 4,458,872 + MPMX20_04276 0.57 +0.1 4,458,883 + MPMX20_04276 0.59 +0.1 4,458,891 - MPMX20_04276 0.60 -0.5 4,458,970 + MPMX20_04276 0.69 +0.8 4,458,970 + MPMX20_04276 0.69 +0.3 4,458,970 + MPMX20_04276 0.69 -0.5 4,458,970 + MPMX20_04276 0.69 -2.2 4,458,970 + MPMX20_04276 0.69 +0.7 4,458,978 - MPMX20_04276 0.70 -0.2 4,458,978 - MPMX20_04276 0.70 -2.2 4,458,988 - MPMX20_04276 0.72 +1.3 4,458,999 - MPMX20_04276 0.73 -1.5 4,459,026 + MPMX20_04276 0.76 -0.6 4,459,028 + MPMX20_04276 0.77 -1.2 4,459,033 + MPMX20_04276 0.77 +0.8 4,459,036 - MPMX20_04276 0.78 +0.7 4,459,036 - MPMX20_04276 0.78 -0.2 4,459,058 - MPMX20_04276 0.80 -1.0 4,459,221 + -1.5 4,459,237 - +0.3 4,459,237 - -0.1 4,459,298 + -0.4 4,459,306 - +1.5
Or see this region's nucleotide sequence