Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04271 and MPMX20_04272 are separated by 145 nucleotides MPMX20_04272 and MPMX20_04273 are separated by 100 nucleotides
MPMX20_04271: MPMX20_04271 - Siroheme synthase, at 4,454,145 to 4,455,518
_04271
MPMX20_04272: MPMX20_04272 - hypothetical protein, at 4,455,664 to 4,455,834
_04272
MPMX20_04273: MPMX20_04273 - Tryptophan--tRNA ligase, at 4,455,935 to 4,456,939
_04273
Position (kb)
4455
4456 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4454.812 kb on - strand, within MPMX20_04271 at 4454.880 kb on + strand, within MPMX20_04271 at 4454.971 kb on - strand, within MPMX20_04271 at 4454.989 kb on - strand, within MPMX20_04271 at 4455.038 kb on + strand, within MPMX20_04271 at 4455.038 kb on + strand, within MPMX20_04271 at 4455.038 kb on + strand, within MPMX20_04271 at 4455.046 kb on - strand, within MPMX20_04271 at 4455.149 kb on - strand, within MPMX20_04271 at 4455.149 kb on - strand, within MPMX20_04271 at 4455.190 kb on - strand, within MPMX20_04271 at 4455.247 kb on + strand, within MPMX20_04271 at 4455.247 kb on + strand, within MPMX20_04271 at 4455.292 kb on + strand, within MPMX20_04271 at 4455.292 kb on + strand, within MPMX20_04271 at 4455.334 kb on - strand, within MPMX20_04271 at 4455.337 kb on + strand, within MPMX20_04271 at 4455.337 kb on + strand, within MPMX20_04271 at 4455.347 kb on + strand, within MPMX20_04271 at 4455.355 kb on - strand, within MPMX20_04271 at 4455.355 kb on - strand, within MPMX20_04271 at 4455.382 kb on + strand at 4455.382 kb on + strand at 4455.425 kb on - strand at 4455.449 kb on - strand at 4455.483 kb on - strand at 4455.483 kb on - strand at 4455.533 kb on + strand at 4455.688 kb on + strand, within MPMX20_04272 at 4455.766 kb on - strand, within MPMX20_04272 at 4455.835 kb on + strand at 4455.917 kb on + strand at 4455.932 kb on + strand at 4455.940 kb on - strand at 4455.972 kb on + strand at 4456.076 kb on - strand, within MPMX20_04273 at 4456.091 kb on + strand, within MPMX20_04273 at 4456.116 kb on + strand, within MPMX20_04273 at 4456.156 kb on - strand, within MPMX20_04273 at 4456.177 kb on - strand, within MPMX20_04273 at 4456.177 kb on - strand, within MPMX20_04273 at 4456.177 kb on - strand, within MPMX20_04273 at 4456.204 kb on + strand, within MPMX20_04273 at 4456.218 kb on + strand, within MPMX20_04273 at 4456.223 kb on + strand, within MPMX20_04273 at 4456.362 kb on - strand, within MPMX20_04273 at 4456.375 kb on - strand, within MPMX20_04273 at 4456.420 kb on - strand, within MPMX20_04273 at 4456.431 kb on + strand, within MPMX20_04273 at 4456.431 kb on + strand, within MPMX20_04273 at 4456.439 kb on - strand, within MPMX20_04273 at 4456.474 kb on + strand, within MPMX20_04273 at 4456.526 kb on - strand, within MPMX20_04273 at 4456.526 kb on - strand, within MPMX20_04273 at 4456.544 kb on + strand, within MPMX20_04273 at 4456.544 kb on + strand, within MPMX20_04273 at 4456.552 kb on - strand, within MPMX20_04273 at 4456.562 kb on + strand, within MPMX20_04273 at 4456.572 kb on + strand, within MPMX20_04273 at 4456.580 kb on - strand, within MPMX20_04273 at 4456.652 kb on + strand, within MPMX20_04273 at 4456.660 kb on - strand, within MPMX20_04273 at 4456.672 kb on - strand, within MPMX20_04273 at 4456.752 kb on - strand, within MPMX20_04273 at 4456.772 kb on - strand, within MPMX20_04273
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,454,812 - MPMX20_04271 0.49 -0.3 4,454,880 + MPMX20_04271 0.53 -0.4 4,454,971 - MPMX20_04271 0.60 -0.2 4,454,989 - MPMX20_04271 0.61 -0.2 4,455,038 + MPMX20_04271 0.65 +0.9 4,455,038 + MPMX20_04271 0.65 -1.1 4,455,038 + MPMX20_04271 0.65 +0.5 4,455,046 - MPMX20_04271 0.66 -0.1 4,455,149 - MPMX20_04271 0.73 -0.0 4,455,149 - MPMX20_04271 0.73 -1.2 4,455,190 - MPMX20_04271 0.76 -0.8 4,455,247 + MPMX20_04271 0.80 +0.5 4,455,247 + MPMX20_04271 0.80 -0.4 4,455,292 + MPMX20_04271 0.83 -0.3 4,455,292 + MPMX20_04271 0.83 +0.8 4,455,334 - MPMX20_04271 0.87 -0.3 4,455,337 + MPMX20_04271 0.87 -1.9 4,455,337 + MPMX20_04271 0.87 -0.8 4,455,347 + MPMX20_04271 0.87 +1.2 4,455,355 - MPMX20_04271 0.88 +0.4 4,455,355 - MPMX20_04271 0.88 -0.2 4,455,382 + -1.1 4,455,382 + +0.3 4,455,425 - +2.0 4,455,449 - +0.3 4,455,483 - +0.6 4,455,483 - +1.3 4,455,533 + +0.7 4,455,688 + MPMX20_04272 0.14 -2.0 4,455,766 - MPMX20_04272 0.60 -1.4 4,455,835 + -0.7 4,455,917 + +0.3 4,455,932 + +0.6 4,455,940 - -0.2 4,455,972 + +0.8 4,456,076 - MPMX20_04273 0.14 -0.2 4,456,091 + MPMX20_04273 0.16 +0.4 4,456,116 + MPMX20_04273 0.18 +1.5 4,456,156 - MPMX20_04273 0.22 -1.0 4,456,177 - MPMX20_04273 0.24 -0.2 4,456,177 - MPMX20_04273 0.24 +0.1 4,456,177 - MPMX20_04273 0.24 -1.0 4,456,204 + MPMX20_04273 0.27 -2.2 4,456,218 + MPMX20_04273 0.28 -0.4 4,456,223 + MPMX20_04273 0.29 -0.5 4,456,362 - MPMX20_04273 0.42 +1.5 4,456,375 - MPMX20_04273 0.44 -0.3 4,456,420 - MPMX20_04273 0.48 -0.2 4,456,431 + MPMX20_04273 0.49 +0.8 4,456,431 + MPMX20_04273 0.49 -0.6 4,456,439 - MPMX20_04273 0.50 +1.5 4,456,474 + MPMX20_04273 0.54 -1.9 4,456,526 - MPMX20_04273 0.59 +2.1 4,456,526 - MPMX20_04273 0.59 +0.6 4,456,544 + MPMX20_04273 0.61 -0.1 4,456,544 + MPMX20_04273 0.61 -0.4 4,456,552 - MPMX20_04273 0.61 -1.3 4,456,562 + MPMX20_04273 0.62 -1.0 4,456,572 + MPMX20_04273 0.63 -1.1 4,456,580 - MPMX20_04273 0.64 -0.0 4,456,652 + MPMX20_04273 0.71 -3.1 4,456,660 - MPMX20_04273 0.72 -0.8 4,456,672 - MPMX20_04273 0.73 -2.9 4,456,752 - MPMX20_04273 0.81 -2.1 4,456,772 - MPMX20_04273 0.83 +1.8
Or see this region's nucleotide sequence