Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04118 and MPMX20_04119 are separated by 111 nucleotides MPMX20_04119 and MPMX20_04120 overlap by 1 nucleotides
MPMX20_04118: MPMX20_04118 - Cytosol aminopeptidase, at 4,310,902 to 4,312,413
_04118
MPMX20_04119: MPMX20_04119 - DNA polymerase III subunit chi, at 4,312,525 to 4,312,968
_04119
MPMX20_04120: MPMX20_04120 - Valine--tRNA ligase, at 4,312,968 to 4,315,823
_04120
Position (kb)
4312
4313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4311.545 kb on - strand, within MPMX20_04118 at 4311.660 kb on + strand, within MPMX20_04118 at 4311.665 kb on + strand, within MPMX20_04118 at 4311.680 kb on - strand, within MPMX20_04118 at 4311.705 kb on + strand, within MPMX20_04118 at 4311.711 kb on + strand, within MPMX20_04118 at 4311.758 kb on + strand, within MPMX20_04118 at 4311.796 kb on + strand, within MPMX20_04118 at 4311.835 kb on - strand, within MPMX20_04118 at 4311.869 kb on - strand, within MPMX20_04118 at 4311.876 kb on + strand, within MPMX20_04118 at 4311.935 kb on + strand, within MPMX20_04118 at 4311.945 kb on + strand, within MPMX20_04118 at 4311.951 kb on - strand, within MPMX20_04118 at 4311.966 kb on - strand, within MPMX20_04118 at 4311.976 kb on - strand, within MPMX20_04118 at 4311.985 kb on + strand, within MPMX20_04118 at 4311.990 kb on + strand, within MPMX20_04118 at 4311.998 kb on - strand, within MPMX20_04118 at 4312.010 kb on + strand, within MPMX20_04118 at 4312.021 kb on + strand, within MPMX20_04118 at 4312.095 kb on + strand, within MPMX20_04118 at 4312.095 kb on + strand, within MPMX20_04118 at 4312.155 kb on + strand, within MPMX20_04118 at 4312.161 kb on + strand, within MPMX20_04118 at 4312.169 kb on - strand, within MPMX20_04118 at 4312.169 kb on - strand, within MPMX20_04118 at 4312.210 kb on + strand, within MPMX20_04118 at 4312.226 kb on - strand, within MPMX20_04118 at 4312.281 kb on + strand at 4312.302 kb on - strand at 4312.332 kb on + strand at 4312.332 kb on + strand at 4312.332 kb on + strand at 4312.340 kb on - strand at 4312.401 kb on - strand at 4312.442 kb on - strand at 4312.444 kb on + strand at 4312.546 kb on + strand at 4312.547 kb on - strand at 4312.547 kb on - strand at 4312.593 kb on - strand, within MPMX20_04119 at 4312.630 kb on + strand, within MPMX20_04119 at 4312.638 kb on - strand, within MPMX20_04119 at 4312.712 kb on + strand, within MPMX20_04119 at 4312.735 kb on + strand, within MPMX20_04119 at 4312.769 kb on - strand, within MPMX20_04119 at 4312.807 kb on + strand, within MPMX20_04119
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,311,545 - MPMX20_04118 0.43 +0.4 4,311,660 + MPMX20_04118 0.50 -0.7 4,311,665 + MPMX20_04118 0.50 -2.9 4,311,680 - MPMX20_04118 0.51 +0.1 4,311,705 + MPMX20_04118 0.53 +0.1 4,311,711 + MPMX20_04118 0.54 -0.3 4,311,758 + MPMX20_04118 0.57 -2.6 4,311,796 + MPMX20_04118 0.59 +0.3 4,311,835 - MPMX20_04118 0.62 -0.3 4,311,869 - MPMX20_04118 0.64 -0.6 4,311,876 + MPMX20_04118 0.64 -0.1 4,311,935 + MPMX20_04118 0.68 -0.1 4,311,945 + MPMX20_04118 0.69 +0.4 4,311,951 - MPMX20_04118 0.69 +0.1 4,311,966 - MPMX20_04118 0.70 -0.0 4,311,976 - MPMX20_04118 0.71 -0.0 4,311,985 + MPMX20_04118 0.72 +0.0 4,311,990 + MPMX20_04118 0.72 +0.4 4,311,998 - MPMX20_04118 0.72 -1.7 4,312,010 + MPMX20_04118 0.73 +0.7 4,312,021 + MPMX20_04118 0.74 -0.0 4,312,095 + MPMX20_04118 0.79 +1.0 4,312,095 + MPMX20_04118 0.79 +0.2 4,312,155 + MPMX20_04118 0.83 +0.1 4,312,161 + MPMX20_04118 0.83 +1.2 4,312,169 - MPMX20_04118 0.84 -0.8 4,312,169 - MPMX20_04118 0.84 -1.3 4,312,210 + MPMX20_04118 0.87 -1.3 4,312,226 - MPMX20_04118 0.88 -1.3 4,312,281 + -0.9 4,312,302 - +0.7 4,312,332 + -0.6 4,312,332 + -0.7 4,312,332 + +0.1 4,312,340 - +0.6 4,312,401 - +0.3 4,312,442 - -0.4 4,312,444 + -1.0 4,312,546 + -1.1 4,312,547 - -0.1 4,312,547 - +0.7 4,312,593 - MPMX20_04119 0.15 -0.7 4,312,630 + MPMX20_04119 0.24 -0.7 4,312,638 - MPMX20_04119 0.25 -1.6 4,312,712 + MPMX20_04119 0.42 -1.7 4,312,735 + MPMX20_04119 0.47 -0.7 4,312,769 - MPMX20_04119 0.55 -0.9 4,312,807 + MPMX20_04119 0.64 +0.5
Or see this region's nucleotide sequence