Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03901 and MPMX20_03902 are separated by 9 nucleotides MPMX20_03902 and MPMX20_03903 are separated by 9 nucleotides MPMX20_03903 and MPMX20_03904 overlap by 1 nucleotides
MPMX20_03901: MPMX20_03901 - Urease subunit alpha, at 4,110,602 to 4,112,305
_03901
MPMX20_03902: MPMX20_03902 - Urease accessory protein UreE, at 4,112,315 to 4,112,779
_03902
MPMX20_03903: MPMX20_03903 - hypothetical protein, at 4,112,789 to 4,113,328
_03903
MPMX20_03904: MPMX20_03904 - Urease accessory protein UreF, at 4,113,328 to 4,114,002
_03904
Position (kb)
4112
4113 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4111.331 kb on + strand, within MPMX20_03901 at 4111.331 kb on + strand, within MPMX20_03901 at 4111.341 kb on + strand, within MPMX20_03901 at 4111.411 kb on - strand, within MPMX20_03901 at 4111.419 kb on + strand, within MPMX20_03901 at 4111.460 kb on - strand, within MPMX20_03901 at 4111.488 kb on + strand, within MPMX20_03901 at 4111.494 kb on - strand, within MPMX20_03901 at 4111.495 kb on - strand, within MPMX20_03901 at 4111.505 kb on - strand, within MPMX20_03901 at 4111.505 kb on - strand, within MPMX20_03901 at 4111.507 kb on + strand, within MPMX20_03901 at 4111.507 kb on + strand, within MPMX20_03901 at 4111.507 kb on + strand, within MPMX20_03901 at 4111.515 kb on - strand, within MPMX20_03901 at 4111.515 kb on - strand, within MPMX20_03901 at 4111.748 kb on - strand, within MPMX20_03901 at 4111.761 kb on - strand, within MPMX20_03901 at 4111.777 kb on - strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.843 kb on - strand, within MPMX20_03901 at 4111.843 kb on - strand, within MPMX20_03901 at 4111.909 kb on - strand, within MPMX20_03901 at 4112.112 kb on + strand, within MPMX20_03901 at 4112.146 kb on + strand at 4112.177 kb on + strand at 4112.189 kb on + strand at 4112.189 kb on - strand at 4112.228 kb on - strand at 4112.307 kb on - strand at 4112.322 kb on + strand at 4112.334 kb on + strand at 4112.342 kb on - strand at 4112.356 kb on - strand at 4112.637 kb on + strand, within MPMX20_03902 at 4112.702 kb on - strand, within MPMX20_03902 at 4112.734 kb on - strand at 4112.748 kb on + strand at 4112.766 kb on - strand at 4112.855 kb on + strand, within MPMX20_03903 at 4112.947 kb on + strand, within MPMX20_03903 at 4112.993 kb on - strand, within MPMX20_03903 at 4113.106 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.155 kb on + strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.175 kb on - strand, within MPMX20_03903 at 4113.213 kb on + strand, within MPMX20_03903 at 4113.221 kb on - strand, within MPMX20_03903 at 4113.221 kb on - strand, within MPMX20_03903 at 4113.288 kb on - strand at 4113.366 kb on + strand at 4113.409 kb on + strand, within MPMX20_03904 at 4113.417 kb on - strand, within MPMX20_03904 at 4113.446 kb on + strand, within MPMX20_03904 at 4113.446 kb on + strand, within MPMX20_03904 at 4113.484 kb on + strand, within MPMX20_03904 at 4113.490 kb on + strand, within MPMX20_03904 at 4113.490 kb on + strand, within MPMX20_03904 at 4113.570 kb on + strand, within MPMX20_03904 at 4113.583 kb on + strand, within MPMX20_03904 at 4113.583 kb on + strand, within MPMX20_03904 at 4113.593 kb on + strand, within MPMX20_03904 at 4113.614 kb on + strand, within MPMX20_03904 at 4113.648 kb on - strand, within MPMX20_03904 at 4113.654 kb on + strand, within MPMX20_03904 at 4113.675 kb on + strand, within MPMX20_03904 at 4113.685 kb on - strand, within MPMX20_03904 at 4113.722 kb on - strand, within MPMX20_03904 at 4113.726 kb on + strand, within MPMX20_03904 at 4113.732 kb on + strand, within MPMX20_03904 at 4113.764 kb on + strand, within MPMX20_03904 at 4113.769 kb on + strand, within MPMX20_03904 at 4113.776 kb on + strand, within MPMX20_03904
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,111,331 + MPMX20_03901 0.43 +0.2 4,111,331 + MPMX20_03901 0.43 -0.5 4,111,341 + MPMX20_03901 0.43 -1.7 4,111,411 - MPMX20_03901 0.47 -0.2 4,111,419 + MPMX20_03901 0.48 +1.4 4,111,460 - MPMX20_03901 0.50 -0.0 4,111,488 + MPMX20_03901 0.52 +3.3 4,111,494 - MPMX20_03901 0.52 -0.2 4,111,495 - MPMX20_03901 0.52 +0.2 4,111,505 - MPMX20_03901 0.53 +0.4 4,111,505 - MPMX20_03901 0.53 -0.6 4,111,507 + MPMX20_03901 0.53 +0.5 4,111,507 + MPMX20_03901 0.53 -1.0 4,111,507 + MPMX20_03901 0.53 -0.1 4,111,515 - MPMX20_03901 0.54 -0.8 4,111,515 - MPMX20_03901 0.54 -0.3 4,111,748 - MPMX20_03901 0.67 -0.7 4,111,761 - MPMX20_03901 0.68 +2.8 4,111,777 - MPMX20_03901 0.69 -0.7 4,111,835 + MPMX20_03901 0.72 +0.8 4,111,835 + MPMX20_03901 0.72 -0.9 4,111,835 + MPMX20_03901 0.72 +0.3 4,111,843 - MPMX20_03901 0.73 +0.6 4,111,843 - MPMX20_03901 0.73 +0.5 4,111,909 - MPMX20_03901 0.77 +1.6 4,112,112 + MPMX20_03901 0.89 +0.0 4,112,146 + -1.2 4,112,177 + -1.6 4,112,189 + +0.1 4,112,189 - -2.9 4,112,228 - -0.8 4,112,307 - -0.2 4,112,322 + -2.1 4,112,334 + -0.7 4,112,342 - -0.4 4,112,356 - -0.7 4,112,637 + MPMX20_03902 0.69 -1.8 4,112,702 - MPMX20_03902 0.83 -0.7 4,112,734 - -1.2 4,112,748 + +0.4 4,112,766 - -0.4 4,112,855 + MPMX20_03903 0.12 +0.3 4,112,947 + MPMX20_03903 0.29 +2.1 4,112,993 - MPMX20_03903 0.38 +0.3 4,113,106 + MPMX20_03903 0.59 -0.6 4,113,153 + MPMX20_03903 0.67 -0.5 4,113,153 + MPMX20_03903 0.67 -1.0 4,113,153 + MPMX20_03903 0.67 +0.5 4,113,153 + MPMX20_03903 0.67 +0.1 4,113,153 + MPMX20_03903 0.67 -0.6 4,113,153 + MPMX20_03903 0.67 -1.5 4,113,153 + MPMX20_03903 0.67 +2.0 4,113,153 + MPMX20_03903 0.67 +0.2 4,113,153 + MPMX20_03903 0.67 +1.1 4,113,155 + MPMX20_03903 0.68 -0.7 4,113,161 - MPMX20_03903 0.69 +1.1 4,113,161 - MPMX20_03903 0.69 +0.2 4,113,161 - MPMX20_03903 0.69 -0.4 4,113,161 - MPMX20_03903 0.69 -1.5 4,113,161 - MPMX20_03903 0.69 -2.2 4,113,175 - MPMX20_03903 0.71 -0.6 4,113,213 + MPMX20_03903 0.79 -0.4 4,113,221 - MPMX20_03903 0.80 -0.1 4,113,221 - MPMX20_03903 0.80 -0.6 4,113,288 - -1.4 4,113,366 + +0.5 4,113,409 + MPMX20_03904 0.12 +0.3 4,113,417 - MPMX20_03904 0.13 +0.9 4,113,446 + MPMX20_03904 0.17 -0.0 4,113,446 + MPMX20_03904 0.17 +0.1 4,113,484 + MPMX20_03904 0.23 +0.7 4,113,490 + MPMX20_03904 0.24 -0.5 4,113,490 + MPMX20_03904 0.24 -0.6 4,113,570 + MPMX20_03904 0.36 +2.0 4,113,583 + MPMX20_03904 0.38 -0.4 4,113,583 + MPMX20_03904 0.38 -2.7 4,113,593 + MPMX20_03904 0.39 +0.5 4,113,614 + MPMX20_03904 0.42 -0.1 4,113,648 - MPMX20_03904 0.47 -1.2 4,113,654 + MPMX20_03904 0.48 +3.2 4,113,675 + MPMX20_03904 0.51 +1.2 4,113,685 - MPMX20_03904 0.53 +1.0 4,113,722 - MPMX20_03904 0.58 -1.2 4,113,726 + MPMX20_03904 0.59 +0.7 4,113,732 + MPMX20_03904 0.60 +0.1 4,113,764 + MPMX20_03904 0.65 -3.4 4,113,769 + MPMX20_03904 0.65 +0.7 4,113,776 + MPMX20_03904 0.66 +0.2
Or see this region's nucleotide sequence