Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03882 and MPMX20_03883 are separated by 190 nucleotides MPMX20_03883 and MPMX20_03884 are separated by 2 nucleotides
MPMX20_03882: MPMX20_03882 - Outer membrane protein TolC, at 4,090,824 to 4,092,302
_03882
MPMX20_03883: MPMX20_03883 - hypothetical protein, at 4,092,493 to 4,093,158
_03883
MPMX20_03884: MPMX20_03884 - Putative acid--amine ligase YgiC, at 4,093,161 to 4,094,321
_03884
Position (kb)
4092
4093
4094 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4091.518 kb on + strand, within MPMX20_03882 at 4091.629 kb on + strand, within MPMX20_03882 at 4091.637 kb on - strand, within MPMX20_03882 at 4091.637 kb on - strand, within MPMX20_03882 at 4091.637 kb on - strand, within MPMX20_03882 at 4091.657 kb on + strand, within MPMX20_03882 at 4091.692 kb on + strand, within MPMX20_03882 at 4091.718 kb on + strand, within MPMX20_03882 at 4091.726 kb on - strand, within MPMX20_03882 at 4091.726 kb on - strand, within MPMX20_03882 at 4091.733 kb on + strand, within MPMX20_03882 at 4091.733 kb on + strand, within MPMX20_03882 at 4091.756 kb on + strand, within MPMX20_03882 at 4091.804 kb on - strand, within MPMX20_03882 at 4091.806 kb on - strand, within MPMX20_03882 at 4091.828 kb on + strand, within MPMX20_03882 at 4091.833 kb on - strand, within MPMX20_03882 at 4091.858 kb on - strand, within MPMX20_03882 at 4091.908 kb on - strand, within MPMX20_03882 at 4091.941 kb on + strand, within MPMX20_03882 at 4091.946 kb on - strand, within MPMX20_03882 at 4091.949 kb on - strand, within MPMX20_03882 at 4092.015 kb on - strand, within MPMX20_03882 at 4092.025 kb on - strand, within MPMX20_03882 at 4092.137 kb on + strand, within MPMX20_03882 at 4092.145 kb on - strand, within MPMX20_03882 at 4092.145 kb on - strand, within MPMX20_03882 at 4092.191 kb on + strand at 4092.209 kb on + strand at 4092.217 kb on - strand at 4092.223 kb on + strand at 4092.223 kb on + strand at 4092.231 kb on - strand at 4092.231 kb on - strand at 4092.332 kb on - strand at 4092.351 kb on + strand at 4092.352 kb on - strand at 4092.359 kb on - strand at 4092.374 kb on + strand at 4092.374 kb on + strand at 4092.386 kb on + strand at 4092.386 kb on + strand at 4092.421 kb on + strand at 4092.452 kb on - strand at 4092.452 kb on - strand at 4092.462 kb on - strand at 4092.565 kb on - strand, within MPMX20_03883 at 4092.565 kb on - strand, within MPMX20_03883 at 4092.581 kb on - strand, within MPMX20_03883 at 4092.645 kb on + strand, within MPMX20_03883 at 4092.645 kb on + strand, within MPMX20_03883 at 4092.653 kb on - strand, within MPMX20_03883 at 4092.658 kb on - strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.686 kb on - strand, within MPMX20_03883 at 4092.686 kb on - strand, within MPMX20_03883 at 4092.701 kb on + strand, within MPMX20_03883 at 4092.742 kb on + strand, within MPMX20_03883 at 4092.742 kb on + strand, within MPMX20_03883 at 4092.750 kb on - strand, within MPMX20_03883 at 4092.752 kb on + strand, within MPMX20_03883 at 4092.772 kb on + strand, within MPMX20_03883 at 4093.001 kb on + strand, within MPMX20_03883 at 4093.009 kb on - strand, within MPMX20_03883 at 4093.064 kb on + strand, within MPMX20_03883 at 4093.079 kb on + strand, within MPMX20_03883 at 4093.107 kb on - strand at 4093.107 kb on - strand at 4093.141 kb on - strand at 4093.219 kb on + strand at 4093.285 kb on - strand, within MPMX20_03884 at 4093.290 kb on - strand, within MPMX20_03884 at 4093.315 kb on + strand, within MPMX20_03884 at 4093.369 kb on - strand, within MPMX20_03884 at 4093.442 kb on + strand, within MPMX20_03884 at 4093.458 kb on + strand, within MPMX20_03884 at 4093.466 kb on - strand, within MPMX20_03884 at 4093.484 kb on + strand, within MPMX20_03884 at 4093.569 kb on + strand, within MPMX20_03884 at 4093.600 kb on + strand, within MPMX20_03884 at 4093.608 kb on - strand, within MPMX20_03884 at 4093.610 kb on + strand, within MPMX20_03884 at 4093.618 kb on - strand, within MPMX20_03884 at 4093.669 kb on + strand, within MPMX20_03884 at 4093.677 kb on - strand, within MPMX20_03884 at 4093.677 kb on - strand, within MPMX20_03884 at 4093.725 kb on + strand, within MPMX20_03884 at 4093.742 kb on - strand, within MPMX20_03884 at 4093.850 kb on + strand, within MPMX20_03884 at 4093.850 kb on + strand, within MPMX20_03884 at 4093.850 kb on + strand, within MPMX20_03884 at 4093.858 kb on - strand, within MPMX20_03884 at 4093.876 kb on - strand, within MPMX20_03884 at 4093.978 kb on - strand, within MPMX20_03884 at 4093.999 kb on + strand, within MPMX20_03884 at 4094.040 kb on - strand, within MPMX20_03884 at 4094.133 kb on + strand, within MPMX20_03884 at 4094.138 kb on + strand, within MPMX20_03884 at 4094.146 kb on - strand, within MPMX20_03884
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,091,518 + MPMX20_03882 0.47 -2.3 4,091,629 + MPMX20_03882 0.54 -0.5 4,091,637 - MPMX20_03882 0.55 -0.8 4,091,637 - MPMX20_03882 0.55 -0.2 4,091,637 - MPMX20_03882 0.55 -0.0 4,091,657 + MPMX20_03882 0.56 -1.7 4,091,692 + MPMX20_03882 0.59 -1.9 4,091,718 + MPMX20_03882 0.60 -1.4 4,091,726 - MPMX20_03882 0.61 +0.1 4,091,726 - MPMX20_03882 0.61 -0.5 4,091,733 + MPMX20_03882 0.61 -2.5 4,091,733 + MPMX20_03882 0.61 -1.1 4,091,756 + MPMX20_03882 0.63 +0.3 4,091,804 - MPMX20_03882 0.66 +0.1 4,091,806 - MPMX20_03882 0.66 -1.6 4,091,828 + MPMX20_03882 0.68 -1.1 4,091,833 - MPMX20_03882 0.68 +0.2 4,091,858 - MPMX20_03882 0.70 -0.8 4,091,908 - MPMX20_03882 0.73 -0.8 4,091,941 + MPMX20_03882 0.76 -0.3 4,091,946 - MPMX20_03882 0.76 -0.2 4,091,949 - MPMX20_03882 0.76 +1.0 4,092,015 - MPMX20_03882 0.81 -0.3 4,092,025 - MPMX20_03882 0.81 -1.4 4,092,137 + MPMX20_03882 0.89 -0.9 4,092,145 - MPMX20_03882 0.89 +1.0 4,092,145 - MPMX20_03882 0.89 -1.7 4,092,191 + -1.0 4,092,209 + +0.0 4,092,217 - +0.0 4,092,223 + -0.8 4,092,223 + -0.2 4,092,231 - +2.3 4,092,231 - +0.3 4,092,332 - -0.1 4,092,351 + -2.4 4,092,352 - -1.3 4,092,359 - -2.3 4,092,374 + +0.1 4,092,374 + +0.8 4,092,386 + -0.5 4,092,386 + -0.0 4,092,421 + -0.6 4,092,452 - -1.4 4,092,452 - +0.3 4,092,462 - -0.1 4,092,565 - MPMX20_03883 0.11 -0.3 4,092,565 - MPMX20_03883 0.11 -0.3 4,092,581 - MPMX20_03883 0.13 -1.7 4,092,645 + MPMX20_03883 0.23 +0.4 4,092,645 + MPMX20_03883 0.23 -1.5 4,092,653 - MPMX20_03883 0.24 +0.2 4,092,658 - MPMX20_03883 0.25 -1.2 4,092,678 + MPMX20_03883 0.28 -0.5 4,092,678 + MPMX20_03883 0.28 -0.7 4,092,678 + MPMX20_03883 0.28 -1.4 4,092,678 + MPMX20_03883 0.28 -1.3 4,092,678 + MPMX20_03883 0.28 -0.7 4,092,686 - MPMX20_03883 0.29 -0.5 4,092,686 - MPMX20_03883 0.29 -2.1 4,092,701 + MPMX20_03883 0.31 -2.4 4,092,742 + MPMX20_03883 0.37 -0.5 4,092,742 + MPMX20_03883 0.37 -0.8 4,092,750 - MPMX20_03883 0.39 -0.4 4,092,752 + MPMX20_03883 0.39 -0.9 4,092,772 + MPMX20_03883 0.42 -1.8 4,093,001 + MPMX20_03883 0.76 -1.9 4,093,009 - MPMX20_03883 0.77 -0.8 4,093,064 + MPMX20_03883 0.86 -0.3 4,093,079 + MPMX20_03883 0.88 -0.1 4,093,107 - -0.9 4,093,107 - -0.9 4,093,141 - +0.0 4,093,219 + +0.2 4,093,285 - MPMX20_03884 0.11 +1.4 4,093,290 - MPMX20_03884 0.11 +0.4 4,093,315 + MPMX20_03884 0.13 +3.4 4,093,369 - MPMX20_03884 0.18 +0.3 4,093,442 + MPMX20_03884 0.24 +0.4 4,093,458 + MPMX20_03884 0.26 -0.2 4,093,466 - MPMX20_03884 0.26 +0.0 4,093,484 + MPMX20_03884 0.28 +0.3 4,093,569 + MPMX20_03884 0.35 -2.2 4,093,600 + MPMX20_03884 0.38 +0.5 4,093,608 - MPMX20_03884 0.39 -2.5 4,093,610 + MPMX20_03884 0.39 +0.5 4,093,618 - MPMX20_03884 0.39 +0.2 4,093,669 + MPMX20_03884 0.44 -0.8 4,093,677 - MPMX20_03884 0.44 -1.7 4,093,677 - MPMX20_03884 0.44 -1.0 4,093,725 + MPMX20_03884 0.49 -0.5 4,093,742 - MPMX20_03884 0.50 -0.8 4,093,850 + MPMX20_03884 0.59 -0.8 4,093,850 + MPMX20_03884 0.59 -0.2 4,093,850 + MPMX20_03884 0.59 -0.2 4,093,858 - MPMX20_03884 0.60 -2.6 4,093,876 - MPMX20_03884 0.62 -0.6 4,093,978 - MPMX20_03884 0.70 +0.2 4,093,999 + MPMX20_03884 0.72 +0.6 4,094,040 - MPMX20_03884 0.76 +0.1 4,094,133 + MPMX20_03884 0.84 +0.4 4,094,138 + MPMX20_03884 0.84 +0.2 4,094,146 - MPMX20_03884 0.85 +0.0
Or see this region's nucleotide sequence