Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03880 and MPMX20_03881 overlap by 4 nucleotides MPMX20_03881 and MPMX20_03882 are separated by 204 nucleotides MPMX20_03882 and MPMX20_03883 are separated by 190 nucleotides MPMX20_03883 and MPMX20_03884 are separated by 2 nucleotides
MPMX20_03880: MPMX20_03880 - hypothetical protein, at 4,089,568 to 4,089,990
_03880
MPMX20_03881: MPMX20_03881 - ADP-ribose pyrophosphatase, at 4,089,987 to 4,090,619
_03881
MPMX20_03882: MPMX20_03882 - Outer membrane protein TolC, at 4,090,824 to 4,092,302
_03882
MPMX20_03883: MPMX20_03883 - hypothetical protein, at 4,092,493 to 4,093,158
_03883
MPMX20_03884: MPMX20_03884 - Putative acid--amine ligase YgiC, at 4,093,161 to 4,094,321
_03884
Position (kb)
4090
4091
4092
4093 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4089.827 kb on - strand, within MPMX20_03880 at 4089.827 kb on - strand, within MPMX20_03880 at 4089.827 kb on - strand, within MPMX20_03880 at 4089.827 kb on - strand, within MPMX20_03880 at 4089.873 kb on + strand, within MPMX20_03880 at 4089.873 kb on + strand, within MPMX20_03880 at 4089.881 kb on - strand, within MPMX20_03880 at 4089.977 kb on + strand at 4089.982 kb on - strand at 4089.982 kb on - strand at 4090.025 kb on + strand at 4090.095 kb on - strand, within MPMX20_03881 at 4090.097 kb on + strand, within MPMX20_03881 at 4090.105 kb on - strand, within MPMX20_03881 at 4090.105 kb on - strand, within MPMX20_03881 at 4090.105 kb on - strand, within MPMX20_03881 at 4090.197 kb on - strand, within MPMX20_03881 at 4090.259 kb on + strand, within MPMX20_03881 at 4090.319 kb on + strand, within MPMX20_03881 at 4090.381 kb on + strand, within MPMX20_03881 at 4090.429 kb on - strand, within MPMX20_03881 at 4090.429 kb on - strand, within MPMX20_03881 at 4090.430 kb on + strand, within MPMX20_03881 at 4090.502 kb on + strand, within MPMX20_03881 at 4090.622 kb on + strand at 4090.622 kb on + strand at 4090.630 kb on - strand at 4090.680 kb on + strand at 4090.680 kb on + strand at 4090.688 kb on + strand at 4090.689 kb on - strand at 4090.738 kb on + strand at 4090.792 kb on + strand at 4090.792 kb on + strand at 4090.792 kb on + strand at 4090.804 kb on + strand at 4090.838 kb on + strand at 4090.852 kb on + strand at 4090.852 kb on + strand at 4090.852 kb on + strand at 4090.859 kb on - strand at 4090.860 kb on - strand at 4090.860 kb on - strand at 4090.860 kb on - strand at 4090.920 kb on + strand at 4090.920 kb on + strand at 4090.920 kb on + strand at 4090.920 kb on + strand at 4090.925 kb on + strand at 4090.928 kb on - strand at 4090.928 kb on - strand at 4090.928 kb on - strand at 4090.933 kb on - strand at 4090.979 kb on + strand, within MPMX20_03882 at 4090.979 kb on + strand, within MPMX20_03882 at 4090.987 kb on - strand, within MPMX20_03882 at 4091.004 kb on - strand, within MPMX20_03882 at 4091.012 kb on - strand, within MPMX20_03882 at 4091.018 kb on - strand, within MPMX20_03882 at 4091.020 kb on - strand, within MPMX20_03882 at 4091.023 kb on + strand, within MPMX20_03882 at 4091.028 kb on + strand, within MPMX20_03882 at 4091.036 kb on - strand, within MPMX20_03882 at 4091.047 kb on - strand, within MPMX20_03882 at 4091.057 kb on + strand, within MPMX20_03882 at 4091.136 kb on + strand, within MPMX20_03882 at 4091.144 kb on - strand, within MPMX20_03882 at 4091.145 kb on - strand, within MPMX20_03882 at 4091.145 kb on - strand, within MPMX20_03882 at 4091.145 kb on - strand, within MPMX20_03882 at 4091.145 kb on - strand, within MPMX20_03882 at 4091.163 kb on + strand, within MPMX20_03882 at 4091.258 kb on + strand, within MPMX20_03882 at 4091.258 kb on + strand, within MPMX20_03882 at 4091.258 kb on + strand, within MPMX20_03882 at 4091.266 kb on - strand, within MPMX20_03882 at 4091.266 kb on - strand, within MPMX20_03882 at 4091.349 kb on - strand, within MPMX20_03882 at 4091.367 kb on + strand, within MPMX20_03882 at 4091.375 kb on - strand, within MPMX20_03882 at 4091.453 kb on + strand, within MPMX20_03882 at 4091.458 kb on + strand, within MPMX20_03882 at 4091.461 kb on - strand, within MPMX20_03882 at 4091.518 kb on + strand, within MPMX20_03882 at 4091.629 kb on + strand, within MPMX20_03882 at 4091.637 kb on - strand, within MPMX20_03882 at 4091.637 kb on - strand, within MPMX20_03882 at 4091.637 kb on - strand, within MPMX20_03882 at 4091.657 kb on + strand, within MPMX20_03882 at 4091.692 kb on + strand, within MPMX20_03882 at 4091.718 kb on + strand, within MPMX20_03882 at 4091.726 kb on - strand, within MPMX20_03882 at 4091.726 kb on - strand, within MPMX20_03882 at 4091.733 kb on + strand, within MPMX20_03882 at 4091.733 kb on + strand, within MPMX20_03882 at 4091.756 kb on + strand, within MPMX20_03882 at 4091.804 kb on - strand, within MPMX20_03882 at 4091.806 kb on - strand, within MPMX20_03882 at 4091.828 kb on + strand, within MPMX20_03882 at 4091.833 kb on - strand, within MPMX20_03882 at 4091.858 kb on - strand, within MPMX20_03882 at 4091.908 kb on - strand, within MPMX20_03882 at 4091.941 kb on + strand, within MPMX20_03882 at 4091.946 kb on - strand, within MPMX20_03882 at 4091.949 kb on - strand, within MPMX20_03882 at 4092.015 kb on - strand, within MPMX20_03882 at 4092.025 kb on - strand, within MPMX20_03882 at 4092.137 kb on + strand, within MPMX20_03882 at 4092.145 kb on - strand, within MPMX20_03882 at 4092.145 kb on - strand, within MPMX20_03882 at 4092.191 kb on + strand at 4092.209 kb on + strand at 4092.217 kb on - strand at 4092.223 kb on + strand at 4092.223 kb on + strand at 4092.231 kb on - strand at 4092.231 kb on - strand at 4092.332 kb on - strand at 4092.351 kb on + strand at 4092.352 kb on - strand at 4092.359 kb on - strand at 4092.374 kb on + strand at 4092.374 kb on + strand at 4092.386 kb on + strand at 4092.386 kb on + strand at 4092.421 kb on + strand at 4092.452 kb on - strand at 4092.452 kb on - strand at 4092.462 kb on - strand at 4092.565 kb on - strand, within MPMX20_03883 at 4092.565 kb on - strand, within MPMX20_03883 at 4092.581 kb on - strand, within MPMX20_03883 at 4092.645 kb on + strand, within MPMX20_03883 at 4092.645 kb on + strand, within MPMX20_03883 at 4092.653 kb on - strand, within MPMX20_03883 at 4092.658 kb on - strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.678 kb on + strand, within MPMX20_03883 at 4092.686 kb on - strand, within MPMX20_03883 at 4092.686 kb on - strand, within MPMX20_03883 at 4092.701 kb on + strand, within MPMX20_03883 at 4092.742 kb on + strand, within MPMX20_03883 at 4092.742 kb on + strand, within MPMX20_03883 at 4092.750 kb on - strand, within MPMX20_03883 at 4092.752 kb on + strand, within MPMX20_03883 at 4092.772 kb on + strand, within MPMX20_03883 at 4093.001 kb on + strand, within MPMX20_03883 at 4093.009 kb on - strand, within MPMX20_03883 at 4093.064 kb on + strand, within MPMX20_03883 at 4093.079 kb on + strand, within MPMX20_03883 at 4093.107 kb on - strand at 4093.107 kb on - strand at 4093.141 kb on - strand at 4093.219 kb on + strand at 4093.285 kb on - strand, within MPMX20_03884 at 4093.290 kb on - strand, within MPMX20_03884
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 4,089,827 - MPMX20_03880 0.61 -2.4 4,089,827 - MPMX20_03880 0.61 -2.9 4,089,827 - MPMX20_03880 0.61 -0.6 4,089,827 - MPMX20_03880 0.61 +2.0 4,089,873 + MPMX20_03880 0.72 +0.5 4,089,873 + MPMX20_03880 0.72 -0.6 4,089,881 - MPMX20_03880 0.74 +2.0 4,089,977 + -0.3 4,089,982 - -0.2 4,089,982 - -0.3 4,090,025 + +0.0 4,090,095 - MPMX20_03881 0.17 +0.6 4,090,097 + MPMX20_03881 0.17 -0.4 4,090,105 - MPMX20_03881 0.19 +1.3 4,090,105 - MPMX20_03881 0.19 -0.9 4,090,105 - MPMX20_03881 0.19 +0.5 4,090,197 - MPMX20_03881 0.33 +2.8 4,090,259 + MPMX20_03881 0.43 +0.7 4,090,319 + MPMX20_03881 0.52 +0.2 4,090,381 + MPMX20_03881 0.62 +0.8 4,090,429 - MPMX20_03881 0.70 -1.4 4,090,429 - MPMX20_03881 0.70 -0.1 4,090,430 + MPMX20_03881 0.70 +0.1 4,090,502 + MPMX20_03881 0.81 +0.2 4,090,622 + +0.8 4,090,622 + -0.4 4,090,630 - -2.5 4,090,680 + +0.0 4,090,680 + -0.2 4,090,688 + -2.0 4,090,689 - -0.6 4,090,738 + -0.0 4,090,792 + -2.4 4,090,792 + -0.2 4,090,792 + -0.5 4,090,804 + -0.0 4,090,838 + -0.1 4,090,852 + -1.7 4,090,852 + -1.0 4,090,852 + -2.5 4,090,859 - -1.7 4,090,860 - +2.9 4,090,860 - -2.1 4,090,860 - -0.3 4,090,920 + -0.7 4,090,920 + -1.2 4,090,920 + -0.2 4,090,920 + +0.2 4,090,925 + -1.9 4,090,928 - +0.4 4,090,928 - -0.3 4,090,928 - -2.5 4,090,933 - +1.0 4,090,979 + MPMX20_03882 0.10 +0.4 4,090,979 + MPMX20_03882 0.10 -2.4 4,090,987 - MPMX20_03882 0.11 -1.3 4,091,004 - MPMX20_03882 0.12 -1.6 4,091,012 - MPMX20_03882 0.13 +0.8 4,091,018 - MPMX20_03882 0.13 +0.0 4,091,020 - MPMX20_03882 0.13 +0.4 4,091,023 + MPMX20_03882 0.13 -1.4 4,091,028 + MPMX20_03882 0.14 +0.4 4,091,036 - MPMX20_03882 0.14 +1.3 4,091,047 - MPMX20_03882 0.15 +0.2 4,091,057 + MPMX20_03882 0.16 +0.5 4,091,136 + MPMX20_03882 0.21 +1.6 4,091,144 - MPMX20_03882 0.22 +0.4 4,091,145 - MPMX20_03882 0.22 -1.8 4,091,145 - MPMX20_03882 0.22 +0.0 4,091,145 - MPMX20_03882 0.22 -0.5 4,091,145 - MPMX20_03882 0.22 +1.8 4,091,163 + MPMX20_03882 0.23 -1.0 4,091,258 + MPMX20_03882 0.29 -1.8 4,091,258 + MPMX20_03882 0.29 -1.9 4,091,258 + MPMX20_03882 0.29 -1.8 4,091,266 - MPMX20_03882 0.30 +0.4 4,091,266 - MPMX20_03882 0.30 -1.0 4,091,349 - MPMX20_03882 0.35 +0.6 4,091,367 + MPMX20_03882 0.37 -2.7 4,091,375 - MPMX20_03882 0.37 -0.3 4,091,453 + MPMX20_03882 0.43 +0.0 4,091,458 + MPMX20_03882 0.43 -1.2 4,091,461 - MPMX20_03882 0.43 +0.7 4,091,518 + MPMX20_03882 0.47 -2.3 4,091,629 + MPMX20_03882 0.54 -0.5 4,091,637 - MPMX20_03882 0.55 -0.8 4,091,637 - MPMX20_03882 0.55 -0.2 4,091,637 - MPMX20_03882 0.55 -0.0 4,091,657 + MPMX20_03882 0.56 -1.7 4,091,692 + MPMX20_03882 0.59 -1.9 4,091,718 + MPMX20_03882 0.60 -1.4 4,091,726 - MPMX20_03882 0.61 +0.1 4,091,726 - MPMX20_03882 0.61 -0.5 4,091,733 + MPMX20_03882 0.61 -2.5 4,091,733 + MPMX20_03882 0.61 -1.1 4,091,756 + MPMX20_03882 0.63 +0.3 4,091,804 - MPMX20_03882 0.66 +0.1 4,091,806 - MPMX20_03882 0.66 -1.6 4,091,828 + MPMX20_03882 0.68 -1.1 4,091,833 - MPMX20_03882 0.68 +0.2 4,091,858 - MPMX20_03882 0.70 -0.8 4,091,908 - MPMX20_03882 0.73 -0.8 4,091,941 + MPMX20_03882 0.76 -0.3 4,091,946 - MPMX20_03882 0.76 -0.2 4,091,949 - MPMX20_03882 0.76 +1.0 4,092,015 - MPMX20_03882 0.81 -0.3 4,092,025 - MPMX20_03882 0.81 -1.4 4,092,137 + MPMX20_03882 0.89 -0.9 4,092,145 - MPMX20_03882 0.89 +1.0 4,092,145 - MPMX20_03882 0.89 -1.7 4,092,191 + -1.0 4,092,209 + +0.0 4,092,217 - +0.0 4,092,223 + -0.8 4,092,223 + -0.2 4,092,231 - +2.3 4,092,231 - +0.3 4,092,332 - -0.1 4,092,351 + -2.4 4,092,352 - -1.3 4,092,359 - -2.3 4,092,374 + +0.1 4,092,374 + +0.8 4,092,386 + -0.5 4,092,386 + -0.0 4,092,421 + -0.6 4,092,452 - -1.4 4,092,452 - +0.3 4,092,462 - -0.1 4,092,565 - MPMX20_03883 0.11 -0.3 4,092,565 - MPMX20_03883 0.11 -0.3 4,092,581 - MPMX20_03883 0.13 -1.7 4,092,645 + MPMX20_03883 0.23 +0.4 4,092,645 + MPMX20_03883 0.23 -1.5 4,092,653 - MPMX20_03883 0.24 +0.2 4,092,658 - MPMX20_03883 0.25 -1.2 4,092,678 + MPMX20_03883 0.28 -0.5 4,092,678 + MPMX20_03883 0.28 -0.7 4,092,678 + MPMX20_03883 0.28 -1.4 4,092,678 + MPMX20_03883 0.28 -1.3 4,092,678 + MPMX20_03883 0.28 -0.7 4,092,686 - MPMX20_03883 0.29 -0.5 4,092,686 - MPMX20_03883 0.29 -2.1 4,092,701 + MPMX20_03883 0.31 -2.4 4,092,742 + MPMX20_03883 0.37 -0.5 4,092,742 + MPMX20_03883 0.37 -0.8 4,092,750 - MPMX20_03883 0.39 -0.4 4,092,752 + MPMX20_03883 0.39 -0.9 4,092,772 + MPMX20_03883 0.42 -1.8 4,093,001 + MPMX20_03883 0.76 -1.9 4,093,009 - MPMX20_03883 0.77 -0.8 4,093,064 + MPMX20_03883 0.86 -0.3 4,093,079 + MPMX20_03883 0.88 -0.1 4,093,107 - -0.9 4,093,107 - -0.9 4,093,141 - +0.0 4,093,219 + +0.2 4,093,285 - MPMX20_03884 0.11 +1.4 4,093,290 - MPMX20_03884 0.11 +0.4
Or see this region's nucleotide sequence