Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03751 and MPMX20_03752 are separated by 5 nucleotides MPMX20_03752 and MPMX20_03753 are separated by 23 nucleotides MPMX20_03753 and MPMX20_03754 are separated by 101 nucleotides MPMX20_03754 and MPMX20_03755 are separated by 6 nucleotides
MPMX20_03751: MPMX20_03751 - Single-stranded-DNA-specific exonuclease RecJ, at 3,953,154 to 3,954,887
_03751
MPMX20_03752: MPMX20_03752 - Thiol:disulfide interchange protein DsbC, at 3,954,893 to 3,955,606
_03752
MPMX20_03753: MPMX20_03753 - Tyrosine recombinase XerD, at 3,955,630 to 3,956,526
_03753
MPMX20_03754: MPMX20_03754 - Flavodoxin 2, at 3,956,628 to 3,957,149
_03754
MPMX20_03755: MPMX20_03755 - Inner membrane protein YgfX, at 3,957,156 to 3,957,566
_03755
Position (kb)
3955
3956
3957 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3954.667 kb on - strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.676 kb on + strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.684 kb on - strand, within MPMX20_03751 at 3954.749 kb on + strand at 3954.749 kb on + strand at 3954.757 kb on - strand at 3954.757 kb on - strand at 3954.757 kb on - strand at 3954.929 kb on - strand at 3954.951 kb on - strand at 3954.975 kb on - strand, within MPMX20_03752 at 3954.980 kb on + strand, within MPMX20_03752 at 3954.988 kb on - strand, within MPMX20_03752 at 3955.037 kb on - strand, within MPMX20_03752 at 3955.037 kb on - strand, within MPMX20_03752 at 3955.144 kb on + strand, within MPMX20_03752 at 3955.144 kb on + strand, within MPMX20_03752 at 3955.202 kb on - strand, within MPMX20_03752 at 3955.202 kb on - strand, within MPMX20_03752 at 3955.234 kb on + strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.242 kb on - strand, within MPMX20_03752 at 3955.326 kb on + strand, within MPMX20_03752 at 3955.369 kb on + strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.377 kb on - strand, within MPMX20_03752 at 3955.433 kb on - strand, within MPMX20_03752 at 3955.435 kb on + strand, within MPMX20_03752 at 3955.490 kb on - strand, within MPMX20_03752 at 3955.492 kb on - strand, within MPMX20_03752 at 3955.494 kb on - strand, within MPMX20_03752 at 3955.503 kb on + strand, within MPMX20_03752 at 3955.523 kb on + strand, within MPMX20_03752 at 3955.533 kb on - strand, within MPMX20_03752 at 3955.580 kb on + strand at 3955.645 kb on - strand at 3955.645 kb on - strand at 3955.737 kb on - strand, within MPMX20_03753 at 3955.830 kb on + strand, within MPMX20_03753 at 3955.919 kb on + strand, within MPMX20_03753 at 3955.942 kb on + strand, within MPMX20_03753 at 3955.982 kb on - strand, within MPMX20_03753 at 3955.984 kb on - strand, within MPMX20_03753 at 3955.989 kb on + strand, within MPMX20_03753 at 3956.034 kb on - strand, within MPMX20_03753 at 3956.043 kb on + strand, within MPMX20_03753 at 3956.043 kb on + strand, within MPMX20_03753 at 3956.043 kb on + strand, within MPMX20_03753 at 3956.051 kb on - strand, within MPMX20_03753 at 3956.081 kb on - strand, within MPMX20_03753 at 3956.096 kb on + strand, within MPMX20_03753 at 3956.118 kb on - strand, within MPMX20_03753 at 3956.185 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.224 kb on + strand, within MPMX20_03753 at 3956.232 kb on - strand, within MPMX20_03753 at 3956.232 kb on - strand, within MPMX20_03753 at 3956.264 kb on + strand, within MPMX20_03753 at 3956.297 kb on - strand, within MPMX20_03753 at 3956.307 kb on - strand, within MPMX20_03753 at 3956.329 kb on + strand, within MPMX20_03753 at 3956.333 kb on + strand, within MPMX20_03753 at 3956.355 kb on - strand, within MPMX20_03753 at 3956.424 kb on + strand, within MPMX20_03753 at 3956.439 kb on + strand at 3956.444 kb on + strand at 3956.486 kb on - strand at 3956.518 kb on + strand at 3956.578 kb on + strand at 3956.580 kb on + strand at 3956.588 kb on - strand at 3956.614 kb on - strand at 3956.632 kb on + strand at 3956.637 kb on + strand at 3956.640 kb on - strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.642 kb on + strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.650 kb on - strand at 3956.668 kb on - strand at 3956.704 kb on + strand, within MPMX20_03754 at 3956.712 kb on - strand, within MPMX20_03754 at 3956.729 kb on + strand, within MPMX20_03754 at 3956.743 kb on + strand, within MPMX20_03754 at 3956.777 kb on - strand, within MPMX20_03754 at 3956.830 kb on + strand, within MPMX20_03754 at 3956.834 kb on - strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.900 kb on + strand, within MPMX20_03754 at 3956.970 kb on - strand, within MPMX20_03754 at 3956.988 kb on + strand, within MPMX20_03754 at 3957.059 kb on + strand, within MPMX20_03754 at 3957.062 kb on - strand, within MPMX20_03754 at 3957.130 kb on + strand at 3957.208 kb on + strand, within MPMX20_03755 at 3957.211 kb on - strand, within MPMX20_03755 at 3957.212 kb on + strand, within MPMX20_03755 at 3957.214 kb on + strand, within MPMX20_03755 at 3957.216 kb on - strand, within MPMX20_03755 at 3957.216 kb on - strand, within MPMX20_03755 at 3957.230 kb on - strand, within MPMX20_03755 at 3957.230 kb on - strand, within MPMX20_03755 at 3957.237 kb on - strand, within MPMX20_03755 at 3957.306 kb on - strand, within MPMX20_03755 at 3957.411 kb on + strand, within MPMX20_03755 at 3957.427 kb on - strand, within MPMX20_03755 at 3957.459 kb on - strand, within MPMX20_03755 at 3957.472 kb on - strand, within MPMX20_03755 at 3957.476 kb on + strand, within MPMX20_03755 at 3957.480 kb on + strand, within MPMX20_03755 at 3957.494 kb on - strand, within MPMX20_03755 at 3957.514 kb on + strand, within MPMX20_03755
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,954,667 - MPMX20_03751 0.87 -0.8 3,954,676 + MPMX20_03751 0.88 -0.5 3,954,676 + MPMX20_03751 0.88 +0.4 3,954,676 + MPMX20_03751 0.88 -1.0 3,954,676 + MPMX20_03751 0.88 +0.4 3,954,676 + MPMX20_03751 0.88 +0.0 3,954,684 - MPMX20_03751 0.88 -2.1 3,954,684 - MPMX20_03751 0.88 -0.1 3,954,684 - MPMX20_03751 0.88 +1.8 3,954,684 - MPMX20_03751 0.88 -0.5 3,954,684 - MPMX20_03751 0.88 -0.4 3,954,684 - MPMX20_03751 0.88 -0.4 3,954,684 - MPMX20_03751 0.88 -0.7 3,954,749 + +0.4 3,954,749 + +0.0 3,954,757 - +0.1 3,954,757 - -0.7 3,954,757 - -2.7 3,954,929 - -2.3 3,954,951 - -0.7 3,954,975 - MPMX20_03752 0.11 +0.1 3,954,980 + MPMX20_03752 0.12 -1.2 3,954,988 - MPMX20_03752 0.13 -2.7 3,955,037 - MPMX20_03752 0.20 -0.1 3,955,037 - MPMX20_03752 0.20 -0.2 3,955,144 + MPMX20_03752 0.35 +0.7 3,955,144 + MPMX20_03752 0.35 +0.2 3,955,202 - MPMX20_03752 0.43 -1.2 3,955,202 - MPMX20_03752 0.43 +0.0 3,955,234 + MPMX20_03752 0.48 +0.5 3,955,242 - MPMX20_03752 0.49 +0.6 3,955,242 - MPMX20_03752 0.49 -0.2 3,955,242 - MPMX20_03752 0.49 -0.1 3,955,326 + MPMX20_03752 0.61 +0.0 3,955,369 + MPMX20_03752 0.67 +0.4 3,955,377 - MPMX20_03752 0.68 +1.3 3,955,377 - MPMX20_03752 0.68 +1.4 3,955,377 - MPMX20_03752 0.68 -0.8 3,955,377 - MPMX20_03752 0.68 +0.3 3,955,377 - MPMX20_03752 0.68 +2.0 3,955,433 - MPMX20_03752 0.76 +0.5 3,955,435 + MPMX20_03752 0.76 +0.8 3,955,490 - MPMX20_03752 0.84 +0.7 3,955,492 - MPMX20_03752 0.84 -1.9 3,955,494 - MPMX20_03752 0.84 +1.7 3,955,503 + MPMX20_03752 0.85 -0.6 3,955,523 + MPMX20_03752 0.88 -0.6 3,955,533 - MPMX20_03752 0.90 -1.3 3,955,580 + -1.0 3,955,645 - -0.5 3,955,645 - -1.1 3,955,737 - MPMX20_03753 0.12 -3.1 3,955,830 + MPMX20_03753 0.22 -0.9 3,955,919 + MPMX20_03753 0.32 -2.3 3,955,942 + MPMX20_03753 0.35 -1.3 3,955,982 - MPMX20_03753 0.39 -2.6 3,955,984 - MPMX20_03753 0.39 -2.1 3,955,989 + MPMX20_03753 0.40 -2.9 3,956,034 - MPMX20_03753 0.45 -0.8 3,956,043 + MPMX20_03753 0.46 -0.8 3,956,043 + MPMX20_03753 0.46 -1.3 3,956,043 + MPMX20_03753 0.46 -2.1 3,956,051 - MPMX20_03753 0.47 +2.6 3,956,081 - MPMX20_03753 0.50 +1.6 3,956,096 + MPMX20_03753 0.52 -2.6 3,956,118 - MPMX20_03753 0.54 -0.7 3,956,185 + MPMX20_03753 0.62 -1.8 3,956,224 + MPMX20_03753 0.66 -2.0 3,956,224 + MPMX20_03753 0.66 -2.0 3,956,224 + MPMX20_03753 0.66 -1.6 3,956,224 + MPMX20_03753 0.66 -0.8 3,956,224 + MPMX20_03753 0.66 -1.6 3,956,232 - MPMX20_03753 0.67 +0.2 3,956,232 - MPMX20_03753 0.67 -2.1 3,956,264 + MPMX20_03753 0.71 -2.4 3,956,297 - MPMX20_03753 0.74 -1.1 3,956,307 - MPMX20_03753 0.75 -2.3 3,956,329 + MPMX20_03753 0.78 -2.0 3,956,333 + MPMX20_03753 0.78 -0.8 3,956,355 - MPMX20_03753 0.81 +0.4 3,956,424 + MPMX20_03753 0.89 -0.8 3,956,439 + -1.7 3,956,444 + -2.1 3,956,486 - -0.6 3,956,518 + -0.4 3,956,578 + +2.2 3,956,580 + -1.6 3,956,588 - -0.2 3,956,614 - -1.7 3,956,632 + -0.8 3,956,637 + -1.1 3,956,640 - +0.2 3,956,642 + -0.9 3,956,642 + -3.1 3,956,642 + -2.6 3,956,642 + -0.8 3,956,650 - -1.9 3,956,650 - +0.0 3,956,650 - +1.3 3,956,650 - -0.1 3,956,650 - -2.6 3,956,668 - -2.3 3,956,704 + MPMX20_03754 0.15 -1.2 3,956,712 - MPMX20_03754 0.16 +0.1 3,956,729 + MPMX20_03754 0.19 -0.9 3,956,743 + MPMX20_03754 0.22 -1.3 3,956,777 - MPMX20_03754 0.29 +1.3 3,956,830 + MPMX20_03754 0.39 -1.7 3,956,834 - MPMX20_03754 0.39 +0.8 3,956,900 + MPMX20_03754 0.52 -1.4 3,956,900 + MPMX20_03754 0.52 -0.3 3,956,900 + MPMX20_03754 0.52 -0.6 3,956,900 + MPMX20_03754 0.52 +0.1 3,956,970 - MPMX20_03754 0.66 -1.5 3,956,988 + MPMX20_03754 0.69 -1.8 3,957,059 + MPMX20_03754 0.83 -2.3 3,957,062 - MPMX20_03754 0.83 -1.8 3,957,130 + +0.0 3,957,208 + MPMX20_03755 0.13 -1.4 3,957,211 - MPMX20_03755 0.13 +1.0 3,957,212 + MPMX20_03755 0.14 +0.1 3,957,214 + MPMX20_03755 0.14 +0.0 3,957,216 - MPMX20_03755 0.15 +0.6 3,957,216 - MPMX20_03755 0.15 -2.3 3,957,230 - MPMX20_03755 0.18 -1.1 3,957,230 - MPMX20_03755 0.18 -0.2 3,957,237 - MPMX20_03755 0.20 -0.0 3,957,306 - MPMX20_03755 0.36 +0.9 3,957,411 + MPMX20_03755 0.62 -0.2 3,957,427 - MPMX20_03755 0.66 -0.7 3,957,459 - MPMX20_03755 0.74 +1.2 3,957,472 - MPMX20_03755 0.77 +1.0 3,957,476 + MPMX20_03755 0.78 +0.3 3,957,480 + MPMX20_03755 0.79 -0.7 3,957,494 - MPMX20_03755 0.82 -0.7 3,957,514 + MPMX20_03755 0.87 +0.5
Or see this region's nucleotide sequence