Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03684 and MPMX20_03685 are separated by 139 nucleotides MPMX20_03685 and MPMX20_03686 are separated by 12 nucleotides MPMX20_03686 and MPMX20_03687 overlap by 16 nucleotides MPMX20_03687 and MPMX20_03688 overlap by 4 nucleotides
MPMX20_03684: MPMX20_03684 - Protease 3, at 3,880,379 to 3,883,261
_03684
MPMX20_03685: MPMX20_03685 - RecBCD enzyme subunit RecC, at 3,883,401 to 3,886,775
_03685
MPMX20_03686: MPMX20_03686 - hypothetical protein, at 3,886,788 to 3,887,111
_03686
MPMX20_03687: MPMX20_03687 - hypothetical protein, at 3,887,096 to 3,887,497
_03687
MPMX20_03688: MPMX20_03688 - hypothetical protein, at 3,887,494 to 3,888,054
_03688
Position (kb)
3883
3884
3885
3886
3887 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3882.492 kb on + strand, within MPMX20_03684 at 3882.564 kb on + strand, within MPMX20_03684 at 3882.619 kb on + strand, within MPMX20_03684 at 3882.619 kb on + strand, within MPMX20_03684 at 3882.624 kb on + strand, within MPMX20_03684 at 3882.627 kb on - strand, within MPMX20_03684 at 3882.690 kb on + strand, within MPMX20_03684 at 3882.699 kb on - strand, within MPMX20_03684 at 3882.705 kb on + strand, within MPMX20_03684 at 3882.742 kb on + strand, within MPMX20_03684 at 3882.749 kb on + strand, within MPMX20_03684 at 3882.750 kb on - strand, within MPMX20_03684 at 3882.752 kb on - strand, within MPMX20_03684 at 3882.752 kb on - strand, within MPMX20_03684 at 3882.835 kb on + strand, within MPMX20_03684 at 3882.848 kb on - strand, within MPMX20_03684 at 3882.857 kb on + strand, within MPMX20_03684 at 3882.857 kb on + strand, within MPMX20_03684 at 3882.905 kb on - strand, within MPMX20_03684 at 3882.988 kb on + strand at 3882.996 kb on - strand at 3883.005 kb on + strand at 3883.184 kb on + strand at 3883.188 kb on + strand at 3883.196 kb on - strand at 3883.207 kb on - strand at 3883.248 kb on + strand at 3883.399 kb on + strand at 3883.399 kb on + strand at 3883.399 kb on + strand at 3883.407 kb on - strand at 3883.407 kb on - strand at 3883.407 kb on - strand at 3883.412 kb on - strand at 3883.440 kb on - strand at 3883.807 kb on + strand, within MPMX20_03685 at 3883.909 kb on + strand, within MPMX20_03685 at 3883.975 kb on + strand, within MPMX20_03685 at 3884.118 kb on - strand, within MPMX20_03685 at 3884.150 kb on - strand, within MPMX20_03685 at 3884.264 kb on + strand, within MPMX20_03685 at 3884.271 kb on + strand, within MPMX20_03685 at 3884.272 kb on - strand, within MPMX20_03685 at 3884.272 kb on - strand, within MPMX20_03685 at 3884.367 kb on + strand, within MPMX20_03685 at 3884.375 kb on - strand, within MPMX20_03685 at 3884.556 kb on + strand, within MPMX20_03685 at 3884.564 kb on - strand, within MPMX20_03685 at 3884.615 kb on + strand, within MPMX20_03685 at 3884.692 kb on - strand, within MPMX20_03685 at 3884.726 kb on + strand, within MPMX20_03685 at 3884.759 kb on + strand, within MPMX20_03685 at 3884.767 kb on - strand, within MPMX20_03685 at 3884.767 kb on - strand, within MPMX20_03685 at 3885.123 kb on + strand, within MPMX20_03685 at 3885.161 kb on - strand, within MPMX20_03685 at 3885.163 kb on + strand, within MPMX20_03685 at 3885.362 kb on - strand, within MPMX20_03685 at 3885.479 kb on - strand, within MPMX20_03685 at 3885.479 kb on - strand, within MPMX20_03685 at 3885.489 kb on + strand, within MPMX20_03685 at 3885.489 kb on + strand, within MPMX20_03685 at 3885.503 kb on + strand, within MPMX20_03685 at 3885.571 kb on - strand, within MPMX20_03685 at 3885.601 kb on - strand, within MPMX20_03685 at 3885.606 kb on + strand, within MPMX20_03685 at 3885.714 kb on + strand, within MPMX20_03685 at 3885.782 kb on - strand, within MPMX20_03685 at 3885.928 kb on - strand, within MPMX20_03685 at 3885.982 kb on - strand, within MPMX20_03685 at 3886.160 kb on - strand, within MPMX20_03685 at 3886.219 kb on - strand, within MPMX20_03685 at 3886.404 kb on - strand, within MPMX20_03685 at 3886.547 kb on - strand at 3886.814 kb on - strand at 3886.878 kb on - strand, within MPMX20_03686 at 3886.897 kb on - strand, within MPMX20_03686 at 3886.897 kb on - strand, within MPMX20_03686 at 3886.965 kb on - strand, within MPMX20_03686 at 3887.116 kb on - strand at 3887.118 kb on + strand at 3887.299 kb on - strand, within MPMX20_03687 at 3887.312 kb on + strand, within MPMX20_03687 at 3887.344 kb on + strand, within MPMX20_03687 at 3887.389 kb on - strand, within MPMX20_03687 at 3887.553 kb on + strand, within MPMX20_03688 at 3887.561 kb on - strand, within MPMX20_03688 at 3887.614 kb on - strand, within MPMX20_03688 at 3887.616 kb on + strand, within MPMX20_03688 at 3887.641 kb on + strand, within MPMX20_03688 at 3887.649 kb on - strand, within MPMX20_03688 at 3887.665 kb on + strand, within MPMX20_03688 at 3887.665 kb on + strand, within MPMX20_03688 at 3887.666 kb on + strand, within MPMX20_03688 at 3887.666 kb on + strand, within MPMX20_03688 at 3887.709 kb on - strand, within MPMX20_03688 at 3887.735 kb on - strand, within MPMX20_03688 at 3887.766 kb on - strand, within MPMX20_03688
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,882,492 + MPMX20_03684 0.73 +0.6 3,882,564 + MPMX20_03684 0.76 +0.0 3,882,619 + MPMX20_03684 0.78 +0.7 3,882,619 + MPMX20_03684 0.78 +1.0 3,882,624 + MPMX20_03684 0.78 +0.5 3,882,627 - MPMX20_03684 0.78 -0.5 3,882,690 + MPMX20_03684 0.80 -2.1 3,882,699 - MPMX20_03684 0.80 +0.6 3,882,705 + MPMX20_03684 0.81 +0.2 3,882,742 + MPMX20_03684 0.82 -0.2 3,882,749 + MPMX20_03684 0.82 -0.8 3,882,750 - MPMX20_03684 0.82 +0.5 3,882,752 - MPMX20_03684 0.82 +0.2 3,882,752 - MPMX20_03684 0.82 -1.7 3,882,835 + MPMX20_03684 0.85 -1.9 3,882,848 - MPMX20_03684 0.86 +0.5 3,882,857 + MPMX20_03684 0.86 -0.7 3,882,857 + MPMX20_03684 0.86 -0.7 3,882,905 - MPMX20_03684 0.88 -0.4 3,882,988 + +0.0 3,882,996 - -0.5 3,883,005 + -0.4 3,883,184 + +0.5 3,883,188 + +0.1 3,883,196 - +0.6 3,883,207 - -0.4 3,883,248 + +0.6 3,883,399 + +1.2 3,883,399 + +0.1 3,883,399 + -2.8 3,883,407 - -0.2 3,883,407 - +0.7 3,883,407 - +1.0 3,883,412 - -0.5 3,883,440 - +0.2 3,883,807 + MPMX20_03685 0.12 -1.7 3,883,909 + MPMX20_03685 0.15 -0.5 3,883,975 + MPMX20_03685 0.17 +0.5 3,884,118 - MPMX20_03685 0.21 -0.3 3,884,150 - MPMX20_03685 0.22 -0.8 3,884,264 + MPMX20_03685 0.26 -0.3 3,884,271 + MPMX20_03685 0.26 +1.2 3,884,272 - MPMX20_03685 0.26 +0.5 3,884,272 - MPMX20_03685 0.26 +2.0 3,884,367 + MPMX20_03685 0.29 -1.8 3,884,375 - MPMX20_03685 0.29 -0.3 3,884,556 + MPMX20_03685 0.34 -0.5 3,884,564 - MPMX20_03685 0.34 -0.8 3,884,615 + MPMX20_03685 0.36 -0.5 3,884,692 - MPMX20_03685 0.38 -0.8 3,884,726 + MPMX20_03685 0.39 +1.0 3,884,759 + MPMX20_03685 0.40 +2.5 3,884,767 - MPMX20_03685 0.40 -0.5 3,884,767 - MPMX20_03685 0.40 -1.8 3,885,123 + MPMX20_03685 0.51 -1.0 3,885,161 - MPMX20_03685 0.52 -1.7 3,885,163 + MPMX20_03685 0.52 -1.0 3,885,362 - MPMX20_03685 0.58 -1.7 3,885,479 - MPMX20_03685 0.62 -1.7 3,885,479 - MPMX20_03685 0.62 -0.4 3,885,489 + MPMX20_03685 0.62 -0.3 3,885,489 + MPMX20_03685 0.62 +1.0 3,885,503 + MPMX20_03685 0.62 +1.0 3,885,571 - MPMX20_03685 0.64 -0.8 3,885,601 - MPMX20_03685 0.65 +2.0 3,885,606 + MPMX20_03685 0.65 +1.0 3,885,714 + MPMX20_03685 0.69 +0.0 3,885,782 - MPMX20_03685 0.71 -0.8 3,885,928 - MPMX20_03685 0.75 +1.0 3,885,982 - MPMX20_03685 0.76 -1.3 3,886,160 - MPMX20_03685 0.82 -0.5 3,886,219 - MPMX20_03685 0.83 -0.5 3,886,404 - MPMX20_03685 0.89 +2.0 3,886,547 - -0.5 3,886,814 - -0.3 3,886,878 - MPMX20_03686 0.28 -0.2 3,886,897 - MPMX20_03686 0.34 -0.1 3,886,897 - MPMX20_03686 0.34 -0.8 3,886,965 - MPMX20_03686 0.55 +2.0 3,887,116 - -0.1 3,887,118 + +0.2 3,887,299 - MPMX20_03687 0.50 -0.2 3,887,312 + MPMX20_03687 0.54 +1.6 3,887,344 + MPMX20_03687 0.62 -0.8 3,887,389 - MPMX20_03687 0.73 +0.3 3,887,553 + MPMX20_03688 0.11 +0.9 3,887,561 - MPMX20_03688 0.12 -0.3 3,887,614 - MPMX20_03688 0.21 +0.2 3,887,616 + MPMX20_03688 0.22 +1.6 3,887,641 + MPMX20_03688 0.26 -0.4 3,887,649 - MPMX20_03688 0.28 +0.2 3,887,665 + MPMX20_03688 0.30 +0.8 3,887,665 + MPMX20_03688 0.30 +0.4 3,887,666 + MPMX20_03688 0.31 -0.3 3,887,666 + MPMX20_03688 0.31 -0.0 3,887,709 - MPMX20_03688 0.38 +0.3 3,887,735 - MPMX20_03688 0.43 -0.1 3,887,766 - MPMX20_03688 0.48 -0.2
Or see this region's nucleotide sequence