Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03659 and MPMX20_03660 are separated by 371 nucleotides MPMX20_03660 and MPMX20_03661 are separated by 15 nucleotides MPMX20_03661 and MPMX20_03662 overlap by 4 nucleotides
MPMX20_03659: MPMX20_03659 - putative glucarate transporter, at 3,853,671 to 3,855,026
_03659
MPMX20_03660: MPMX20_03660 - hypothetical protein, at 3,855,398 to 3,855,847
_03660
MPMX20_03661: MPMX20_03661 - tRNA pseudouridine synthase C, at 3,855,863 to 3,856,648
_03661
MPMX20_03662: MPMX20_03662 - putative protein YqcC, at 3,856,645 to 3,856,974
_03662
Position (kb)
3855
3856 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3854.429 kb on + strand, within MPMX20_03659 at 3854.486 kb on - strand, within MPMX20_03659 at 3854.491 kb on - strand, within MPMX20_03659 at 3854.547 kb on + strand, within MPMX20_03659 at 3854.547 kb on + strand, within MPMX20_03659 at 3854.547 kb on + strand, within MPMX20_03659 at 3854.555 kb on - strand, within MPMX20_03659 at 3854.555 kb on - strand, within MPMX20_03659 at 3854.555 kb on - strand, within MPMX20_03659 at 3854.581 kb on + strand, within MPMX20_03659 at 3854.581 kb on + strand, within MPMX20_03659 at 3854.586 kb on + strand, within MPMX20_03659 at 3854.586 kb on + strand, within MPMX20_03659 at 3854.586 kb on + strand, within MPMX20_03659 at 3854.589 kb on - strand, within MPMX20_03659 at 3854.594 kb on - strand, within MPMX20_03659 at 3854.601 kb on - strand, within MPMX20_03659 at 3854.718 kb on + strand, within MPMX20_03659 at 3854.727 kb on - strand, within MPMX20_03659 at 3854.730 kb on + strand, within MPMX20_03659 at 3854.745 kb on + strand, within MPMX20_03659 at 3854.745 kb on + strand, within MPMX20_03659 at 3854.867 kb on + strand, within MPMX20_03659 at 3854.875 kb on - strand, within MPMX20_03659 at 3854.912 kb on + strand at 3854.944 kb on + strand at 3854.965 kb on + strand at 3854.968 kb on - strand at 3854.968 kb on - strand at 3854.968 kb on - strand at 3854.968 kb on - strand at 3854.973 kb on - strand at 3854.990 kb on + strand at 3854.990 kb on + strand at 3854.990 kb on + strand at 3854.990 kb on + strand at 3854.990 kb on + strand at 3854.990 kb on + strand at 3854.998 kb on - strand at 3854.998 kb on - strand at 3854.998 kb on - strand at 3854.998 kb on - strand at 3855.011 kb on + strand at 3855.026 kb on + strand at 3855.044 kb on - strand at 3855.049 kb on - strand at 3855.061 kb on + strand at 3855.064 kb on - strand at 3855.066 kb on + strand at 3855.074 kb on - strand at 3855.122 kb on + strand at 3855.132 kb on + strand at 3855.140 kb on - strand at 3855.181 kb on - strand at 3855.189 kb on + strand at 3855.194 kb on + strand at 3855.194 kb on + strand at 3855.202 kb on - strand at 3855.202 kb on - strand at 3855.225 kb on - strand at 3855.254 kb on + strand at 3855.262 kb on - strand at 3855.262 kb on - strand at 3855.262 kb on - strand at 3855.262 kb on - strand at 3855.272 kb on - strand at 3855.409 kb on + strand at 3855.409 kb on + strand at 3855.409 kb on + strand at 3855.419 kb on + strand at 3855.419 kb on + strand at 3855.419 kb on + strand at 3855.427 kb on - strand at 3855.429 kb on - strand at 3855.452 kb on - strand, within MPMX20_03660 at 3855.466 kb on - strand, within MPMX20_03660 at 3855.564 kb on + strand, within MPMX20_03660 at 3855.598 kb on - strand, within MPMX20_03660 at 3855.703 kb on - strand, within MPMX20_03660 at 3855.758 kb on + strand, within MPMX20_03660 at 3855.758 kb on + strand, within MPMX20_03660 at 3855.766 kb on - strand, within MPMX20_03660 at 3855.786 kb on - strand, within MPMX20_03660 at 3855.809 kb on + strand at 3855.809 kb on + strand at 3855.844 kb on - strand at 3855.846 kb on - strand at 3855.882 kb on + strand at 3855.974 kb on + strand, within MPMX20_03661 at 3855.982 kb on - strand, within MPMX20_03661 at 3856.162 kb on - strand, within MPMX20_03661 at 3856.409 kb on - strand, within MPMX20_03661 at 3856.411 kb on + strand, within MPMX20_03661 at 3856.419 kb on - strand, within MPMX20_03661 at 3856.462 kb on + strand, within MPMX20_03661 at 3856.468 kb on + strand, within MPMX20_03661 at 3856.533 kb on + strand, within MPMX20_03661 at 3856.616 kb on + strand at 3856.712 kb on + strand, within MPMX20_03662 at 3856.722 kb on + strand, within MPMX20_03662 at 3856.781 kb on + strand, within MPMX20_03662 at 3856.783 kb on + strand, within MPMX20_03662 at 3856.806 kb on + strand, within MPMX20_03662 at 3856.844 kb on - strand, within MPMX20_03662
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,854,429 + MPMX20_03659 0.56 +0.5 3,854,486 - MPMX20_03659 0.60 -1.6 3,854,491 - MPMX20_03659 0.60 -0.3 3,854,547 + MPMX20_03659 0.65 -1.2 3,854,547 + MPMX20_03659 0.65 -0.3 3,854,547 + MPMX20_03659 0.65 -1.0 3,854,555 - MPMX20_03659 0.65 +2.1 3,854,555 - MPMX20_03659 0.65 -1.1 3,854,555 - MPMX20_03659 0.65 +0.5 3,854,581 + MPMX20_03659 0.67 -0.1 3,854,581 + MPMX20_03659 0.67 +1.0 3,854,586 + MPMX20_03659 0.67 +0.1 3,854,586 + MPMX20_03659 0.67 +1.3 3,854,586 + MPMX20_03659 0.67 +1.2 3,854,589 - MPMX20_03659 0.68 -0.7 3,854,594 - MPMX20_03659 0.68 +0.2 3,854,601 - MPMX20_03659 0.69 +0.2 3,854,718 + MPMX20_03659 0.77 -1.0 3,854,727 - MPMX20_03659 0.78 -3.3 3,854,730 + MPMX20_03659 0.78 -0.8 3,854,745 + MPMX20_03659 0.79 +1.2 3,854,745 + MPMX20_03659 0.79 +0.5 3,854,867 + MPMX20_03659 0.88 -1.0 3,854,875 - MPMX20_03659 0.89 +0.4 3,854,912 + +3.6 3,854,944 + -1.1 3,854,965 + -0.1 3,854,968 - -0.1 3,854,968 - -1.3 3,854,968 - -0.0 3,854,968 - -0.3 3,854,973 - -0.1 3,854,990 + -0.7 3,854,990 + +0.6 3,854,990 + +0.3 3,854,990 + -0.6 3,854,990 + -0.5 3,854,990 + -0.5 3,854,998 - +0.3 3,854,998 - -0.9 3,854,998 - -1.6 3,854,998 - -0.3 3,855,011 + -2.0 3,855,026 + +0.6 3,855,044 - +0.3 3,855,049 - +0.8 3,855,061 + +0.4 3,855,064 - +0.1 3,855,066 + -0.7 3,855,074 - -0.8 3,855,122 + +1.2 3,855,132 + +0.2 3,855,140 - +0.7 3,855,181 - +0.3 3,855,189 + -0.8 3,855,194 + +0.4 3,855,194 + -0.1 3,855,202 - +1.3 3,855,202 - +0.6 3,855,225 - +0.1 3,855,254 + +0.7 3,855,262 - -0.3 3,855,262 - -1.1 3,855,262 - -1.4 3,855,262 - -0.0 3,855,272 - +0.0 3,855,409 + +0.0 3,855,409 + +0.8 3,855,409 + +0.1 3,855,419 + +0.4 3,855,419 + +0.9 3,855,419 + -0.1 3,855,427 - -0.3 3,855,429 - -0.3 3,855,452 - MPMX20_03660 0.12 -1.3 3,855,466 - MPMX20_03660 0.15 -1.2 3,855,564 + MPMX20_03660 0.37 +2.0 3,855,598 - MPMX20_03660 0.44 +1.5 3,855,703 - MPMX20_03660 0.68 -1.9 3,855,758 + MPMX20_03660 0.80 -2.5 3,855,758 + MPMX20_03660 0.80 -1.4 3,855,766 - MPMX20_03660 0.82 +0.2 3,855,786 - MPMX20_03660 0.86 -0.9 3,855,809 + +0.0 3,855,809 + +0.3 3,855,844 - +0.3 3,855,846 - +0.1 3,855,882 + -2.1 3,855,974 + MPMX20_03661 0.14 -0.8 3,855,982 - MPMX20_03661 0.15 +0.5 3,856,162 - MPMX20_03661 0.38 -1.3 3,856,409 - MPMX20_03661 0.69 -0.5 3,856,411 + MPMX20_03661 0.70 +0.7 3,856,419 - MPMX20_03661 0.71 +0.7 3,856,462 + MPMX20_03661 0.76 -0.5 3,856,468 + MPMX20_03661 0.77 -0.4 3,856,533 + MPMX20_03661 0.85 -1.8 3,856,616 + +1.0 3,856,712 + MPMX20_03662 0.20 +0.5 3,856,722 + MPMX20_03662 0.23 +1.5 3,856,781 + MPMX20_03662 0.41 +0.2 3,856,783 + MPMX20_03662 0.42 -0.5 3,856,806 + MPMX20_03662 0.49 -2.0 3,856,844 - MPMX20_03662 0.60 +0.8
Or see this region's nucleotide sequence