Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03487 and MPMX20_03488 are separated by 99 nucleotides MPMX20_03488 and MPMX20_03489 overlap by 11 nucleotides MPMX20_03489 and MPMX20_03490 are separated by 117 nucleotides MPMX20_03490 and MPMX20_03492 are separated by 656 nucleotides
MPMX20_03487: MPMX20_03487 - Outer membrane protein assembly factor BamE, at 3,676,106 to 3,676,444
_03487
MPMX20_03488: MPMX20_03488 - Persistence and stress-resistance antitoxin PasI, at 3,676,544 to 3,676,831
_03488
MPMX20_03489: MPMX20_03489 - Persistence and stress-resistance toxin PasT, at 3,676,821 to 3,677,297
_03489
MPMX20_03490: MPMX20_03490 - SsrA-binding protein, at 3,677,415 to 3,677,897
_03490
MPMX20_03492: MPMX20_03492 - Prophage integrase IntA, at 3,678,554 to 3,679,795
_03492
Position (kb)
3677
3678 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3676.425 kb on + strand at 3676.433 kb on - strand at 3676.503 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.539 kb on - strand at 3676.708 kb on + strand, within MPMX20_03488 at 3676.708 kb on + strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.770 kb on - strand, within MPMX20_03488 at 3676.839 kb on - strand at 3676.839 kb on - strand at 3676.839 kb on - strand at 3677.323 kb on + strand at 3677.331 kb on - strand at 3677.331 kb on - strand at 3677.331 kb on - strand at 3677.347 kb on + strand at 3677.354 kb on + strand at 3677.354 kb on + strand at 3677.355 kb on - strand at 3677.401 kb on + strand at 3677.452 kb on + strand at 3677.520 kb on + strand, within MPMX20_03490 at 3677.520 kb on - strand, within MPMX20_03490 at 3677.520 kb on - strand, within MPMX20_03490 at 3677.520 kb on - strand, within MPMX20_03490 at 3677.533 kb on - strand, within MPMX20_03490 at 3677.630 kb on + strand, within MPMX20_03490 at 3677.655 kb on + strand, within MPMX20_03490 at 3677.674 kb on + strand, within MPMX20_03490 at 3677.674 kb on + strand, within MPMX20_03490 at 3677.674 kb on + strand, within MPMX20_03490 at 3677.674 kb on + strand, within MPMX20_03490 at 3677.682 kb on - strand, within MPMX20_03490 at 3677.723 kb on + strand, within MPMX20_03490 at 3677.807 kb on + strand, within MPMX20_03490 at 3677.836 kb on + strand, within MPMX20_03490 at 3677.858 kb on + strand at 3677.980 kb on - strand at 3677.982 kb on - strand at 3677.982 kb on - strand at 3677.982 kb on - strand at 3678.176 kb on - strand at 3678.201 kb on + strand at 3678.209 kb on - strand at 3678.215 kb on - strand at 3678.407 kb on + strand at 3678.461 kb on - strand at 3678.500 kb on + strand at 3678.505 kb on + strand at 3678.520 kb on - strand at 3678.540 kb on + strand at 3678.579 kb on - strand at 3678.598 kb on + strand at 3678.603 kb on + strand at 3678.604 kb on + strand at 3678.636 kb on - strand at 3678.642 kb on + strand at 3678.642 kb on + strand at 3678.642 kb on + strand at 3678.669 kb on + strand at 3678.676 kb on + strand at 3678.677 kb on - strand at 3678.683 kb on - strand, within MPMX20_03492 at 3678.717 kb on + strand, within MPMX20_03492 at 3678.725 kb on - strand, within MPMX20_03492 at 3678.729 kb on + strand, within MPMX20_03492 at 3678.739 kb on + strand, within MPMX20_03492 at 3678.739 kb on - strand, within MPMX20_03492 at 3678.744 kb on - strand, within MPMX20_03492 at 3678.779 kb on + strand, within MPMX20_03492 at 3678.785 kb on - strand, within MPMX20_03492 at 3678.821 kb on - strand, within MPMX20_03492 at 3678.838 kb on + strand, within MPMX20_03492 at 3678.846 kb on - strand, within MPMX20_03492 at 3678.846 kb on - strand, within MPMX20_03492
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,676,425 + -0.8 3,676,433 - +0.9 3,676,503 + -0.2 3,676,524 + -0.2 3,676,524 + +0.1 3,676,524 + -1.5 3,676,524 + +1.8 3,676,524 + -0.5 3,676,524 + -0.9 3,676,532 - -0.1 3,676,532 - -0.9 3,676,532 - -0.2 3,676,532 - -0.6 3,676,532 - -1.0 3,676,532 - -0.2 3,676,532 - +0.6 3,676,532 - +0.3 3,676,532 - -0.9 3,676,539 - +0.9 3,676,708 + MPMX20_03488 0.57 -0.3 3,676,708 + MPMX20_03488 0.57 -0.5 3,676,716 - MPMX20_03488 0.60 -1.0 3,676,716 - MPMX20_03488 0.60 -0.1 3,676,716 - MPMX20_03488 0.60 +0.3 3,676,716 - MPMX20_03488 0.60 -1.4 3,676,770 - MPMX20_03488 0.78 -1.6 3,676,839 - -0.1 3,676,839 - +1.2 3,676,839 - -1.0 3,677,323 + -0.1 3,677,331 - -0.4 3,677,331 - +0.5 3,677,331 - -0.1 3,677,347 + -1.1 3,677,354 + -0.1 3,677,354 + +0.4 3,677,355 - -2.8 3,677,401 + -1.3 3,677,452 + +1.6 3,677,520 + MPMX20_03490 0.22 -2.0 3,677,520 - MPMX20_03490 0.22 -1.1 3,677,520 - MPMX20_03490 0.22 -1.9 3,677,520 - MPMX20_03490 0.22 -1.3 3,677,533 - MPMX20_03490 0.24 -2.8 3,677,630 + MPMX20_03490 0.45 -0.8 3,677,655 + MPMX20_03490 0.50 -2.5 3,677,674 + MPMX20_03490 0.54 +0.0 3,677,674 + MPMX20_03490 0.54 -3.4 3,677,674 + MPMX20_03490 0.54 -1.7 3,677,674 + MPMX20_03490 0.54 -3.2 3,677,682 - MPMX20_03490 0.55 -1.5 3,677,723 + MPMX20_03490 0.64 +0.6 3,677,807 + MPMX20_03490 0.81 -0.8 3,677,836 + MPMX20_03490 0.87 -3.2 3,677,858 + -1.6 3,677,980 - -2.3 3,677,982 - -1.7 3,677,982 - -2.6 3,677,982 - -0.0 3,678,176 - +0.4 3,678,201 + -1.4 3,678,209 - +1.0 3,678,215 - -0.0 3,678,407 + -0.4 3,678,461 - -0.8 3,678,500 + +1.1 3,678,505 + +2.0 3,678,520 - +1.0 3,678,540 + +0.9 3,678,579 - -3.4 3,678,598 + -2.0 3,678,603 + +0.6 3,678,604 + +0.1 3,678,636 - -1.4 3,678,642 + -2.0 3,678,642 + -0.9 3,678,642 + -1.8 3,678,669 + +0.2 3,678,676 + +0.2 3,678,677 - +1.1 3,678,683 - MPMX20_03492 0.10 -0.1 3,678,717 + MPMX20_03492 0.13 +0.8 3,678,725 - MPMX20_03492 0.14 +0.5 3,678,729 + MPMX20_03492 0.14 -0.2 3,678,739 + MPMX20_03492 0.15 -1.5 3,678,739 - MPMX20_03492 0.15 -0.8 3,678,744 - MPMX20_03492 0.15 +0.9 3,678,779 + MPMX20_03492 0.18 -0.5 3,678,785 - MPMX20_03492 0.19 +0.7 3,678,821 - MPMX20_03492 0.21 +0.5 3,678,838 + MPMX20_03492 0.23 +0.3 3,678,846 - MPMX20_03492 0.24 +0.4 3,678,846 - MPMX20_03492 0.24 +3.0
Or see this region's nucleotide sequence