Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03486 and MPMX20_03487 are separated by 138 nucleotides MPMX20_03487 and MPMX20_03488 are separated by 99 nucleotides MPMX20_03488 and MPMX20_03489 overlap by 11 nucleotides MPMX20_03489 and MPMX20_03490 are separated by 117 nucleotides
MPMX20_03486: MPMX20_03486 - DNA repair protein RecN, at 3,674,306 to 3,675,967
_03486
MPMX20_03487: MPMX20_03487 - Outer membrane protein assembly factor BamE, at 3,676,106 to 3,676,444
_03487
MPMX20_03488: MPMX20_03488 - Persistence and stress-resistance antitoxin PasI, at 3,676,544 to 3,676,831
_03488
MPMX20_03489: MPMX20_03489 - Persistence and stress-resistance toxin PasT, at 3,676,821 to 3,677,297
_03489
MPMX20_03490: MPMX20_03490 - SsrA-binding protein, at 3,677,415 to 3,677,897
_03490
Position (kb)
3676
3677 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3675.255 kb on - strand, within MPMX20_03486 at 3675.286 kb on + strand, within MPMX20_03486 at 3675.286 kb on + strand, within MPMX20_03486 at 3675.294 kb on - strand, within MPMX20_03486 at 3675.322 kb on + strand, within MPMX20_03486 at 3675.339 kb on - strand, within MPMX20_03486 at 3675.420 kb on - strand, within MPMX20_03486 at 3675.436 kb on + strand, within MPMX20_03486 at 3675.436 kb on + strand, within MPMX20_03486 at 3675.528 kb on + strand, within MPMX20_03486 at 3675.528 kb on + strand, within MPMX20_03486 at 3675.575 kb on + strand, within MPMX20_03486 at 3675.585 kb on + strand, within MPMX20_03486 at 3675.645 kb on - strand, within MPMX20_03486 at 3675.697 kb on + strand, within MPMX20_03486 at 3675.731 kb on + strand, within MPMX20_03486 at 3675.739 kb on - strand, within MPMX20_03486 at 3675.750 kb on + strand, within MPMX20_03486 at 3675.760 kb on + strand, within MPMX20_03486 at 3675.768 kb on - strand, within MPMX20_03486 at 3675.768 kb on - strand, within MPMX20_03486 at 3675.803 kb on + strand at 3675.876 kb on - strand at 3675.961 kb on - strand at 3675.993 kb on - strand at 3675.998 kb on - strand at 3676.085 kb on - strand at 3676.162 kb on + strand, within MPMX20_03487 at 3676.164 kb on + strand, within MPMX20_03487 at 3676.170 kb on - strand, within MPMX20_03487 at 3676.215 kb on + strand, within MPMX20_03487 at 3676.215 kb on + strand, within MPMX20_03487 at 3676.215 kb on + strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.223 kb on - strand, within MPMX20_03487 at 3676.264 kb on - strand, within MPMX20_03487 at 3676.265 kb on - strand, within MPMX20_03487 at 3676.265 kb on - strand, within MPMX20_03487 at 3676.280 kb on - strand, within MPMX20_03487 at 3676.304 kb on - strand, within MPMX20_03487 at 3676.362 kb on + strand, within MPMX20_03487 at 3676.382 kb on - strand, within MPMX20_03487 at 3676.406 kb on - strand, within MPMX20_03487 at 3676.425 kb on + strand at 3676.433 kb on - strand at 3676.503 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.524 kb on + strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.532 kb on - strand at 3676.539 kb on - strand at 3676.708 kb on + strand, within MPMX20_03488 at 3676.708 kb on + strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.716 kb on - strand, within MPMX20_03488 at 3676.770 kb on - strand, within MPMX20_03488 at 3676.839 kb on - strand at 3676.839 kb on - strand at 3676.839 kb on - strand at 3677.323 kb on + strand at 3677.331 kb on - strand at 3677.331 kb on - strand at 3677.331 kb on - strand at 3677.347 kb on + strand at 3677.354 kb on + strand at 3677.354 kb on + strand at 3677.355 kb on - strand at 3677.401 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,675,255 - MPMX20_03486 0.57 +0.1 3,675,286 + MPMX20_03486 0.59 +0.2 3,675,286 + MPMX20_03486 0.59 -0.1 3,675,294 - MPMX20_03486 0.59 +0.2 3,675,322 + MPMX20_03486 0.61 +1.1 3,675,339 - MPMX20_03486 0.62 +0.2 3,675,420 - MPMX20_03486 0.67 -0.3 3,675,436 + MPMX20_03486 0.68 -0.2 3,675,436 + MPMX20_03486 0.68 -0.3 3,675,528 + MPMX20_03486 0.74 -1.5 3,675,528 + MPMX20_03486 0.74 +0.4 3,675,575 + MPMX20_03486 0.76 +0.1 3,675,585 + MPMX20_03486 0.77 +0.1 3,675,645 - MPMX20_03486 0.81 +0.2 3,675,697 + MPMX20_03486 0.84 +0.2 3,675,731 + MPMX20_03486 0.86 +0.5 3,675,739 - MPMX20_03486 0.86 -1.4 3,675,750 + MPMX20_03486 0.87 +1.6 3,675,760 + MPMX20_03486 0.87 +1.2 3,675,768 - MPMX20_03486 0.88 -2.8 3,675,768 - MPMX20_03486 0.88 +0.1 3,675,803 + +0.9 3,675,876 - -0.3 3,675,961 - +0.7 3,675,993 - +0.0 3,675,998 - -0.1 3,676,085 - -0.1 3,676,162 + MPMX20_03487 0.17 -1.5 3,676,164 + MPMX20_03487 0.17 -2.4 3,676,170 - MPMX20_03487 0.19 -2.0 3,676,215 + MPMX20_03487 0.32 -1.3 3,676,215 + MPMX20_03487 0.32 -2.0 3,676,215 + MPMX20_03487 0.32 -1.3 3,676,223 - MPMX20_03487 0.35 -1.9 3,676,223 - MPMX20_03487 0.35 -0.7 3,676,223 - MPMX20_03487 0.35 -0.8 3,676,223 - MPMX20_03487 0.35 -2.1 3,676,264 - MPMX20_03487 0.47 +0.4 3,676,265 - MPMX20_03487 0.47 +0.3 3,676,265 - MPMX20_03487 0.47 -0.1 3,676,280 - MPMX20_03487 0.51 -1.6 3,676,304 - MPMX20_03487 0.58 -1.1 3,676,362 + MPMX20_03487 0.76 -1.9 3,676,382 - MPMX20_03487 0.81 -3.4 3,676,406 - MPMX20_03487 0.88 -0.5 3,676,425 + -0.8 3,676,433 - +0.9 3,676,503 + -0.2 3,676,524 + -0.2 3,676,524 + +0.1 3,676,524 + -1.5 3,676,524 + +1.8 3,676,524 + -0.5 3,676,524 + -0.9 3,676,532 - -0.1 3,676,532 - -0.9 3,676,532 - -0.2 3,676,532 - -0.6 3,676,532 - -1.0 3,676,532 - -0.2 3,676,532 - +0.6 3,676,532 - +0.3 3,676,532 - -0.9 3,676,539 - +0.9 3,676,708 + MPMX20_03488 0.57 -0.3 3,676,708 + MPMX20_03488 0.57 -0.5 3,676,716 - MPMX20_03488 0.60 -1.0 3,676,716 - MPMX20_03488 0.60 -0.1 3,676,716 - MPMX20_03488 0.60 +0.3 3,676,716 - MPMX20_03488 0.60 -1.4 3,676,770 - MPMX20_03488 0.78 -1.6 3,676,839 - -0.1 3,676,839 - +1.2 3,676,839 - -1.0 3,677,323 + -0.1 3,677,331 - -0.4 3,677,331 - +0.5 3,677,331 - -0.1 3,677,347 + -1.1 3,677,354 + -0.1 3,677,354 + +0.4 3,677,355 - -2.8 3,677,401 + -1.3
Or see this region's nucleotide sequence