Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03461 and MPMX20_03462 are separated by 129 nucleotides MPMX20_03462 and MPMX20_03463 overlap by 4 nucleotides MPMX20_03463 and MPMX20_03464 are separated by 131 nucleotides
MPMX20_03461: MPMX20_03461 - Chaperone protein ClpB, at 3,651,389 to 3,653,962
_03461
MPMX20_03462: MPMX20_03462 - Polyphenol oxidase, at 3,654,092 to 3,654,823
_03462
MPMX20_03463: MPMX20_03463 - Ribosomal large subunit pseudouridine synthase D, at 3,654,820 to 3,655,800
_03463
MPMX20_03464: MPMX20_03464 - Outer membrane protein assembly factor BamD, at 3,655,932 to 3,656,669
_03464
Position (kb)
3654
3655
3656 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3653.894 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.899 kb on + strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.907 kb on - strand at 3653.919 kb on - strand at 3653.926 kb on - strand at 3653.926 kb on - strand at 3653.965 kb on - strand at 3653.969 kb on + strand at 3653.970 kb on + strand at 3653.977 kb on - strand at 3653.977 kb on - strand at 3653.987 kb on - strand at 3653.998 kb on + strand at 3654.013 kb on + strand at 3654.030 kb on - strand at 3654.074 kb on - strand at 3654.076 kb on + strand at 3654.079 kb on - strand at 3654.180 kb on - strand, within MPMX20_03462 at 3654.197 kb on - strand, within MPMX20_03462 at 3654.197 kb on - strand, within MPMX20_03462 at 3654.312 kb on - strand, within MPMX20_03462 at 3654.315 kb on + strand, within MPMX20_03462 at 3654.322 kb on + strand, within MPMX20_03462 at 3654.330 kb on - strand, within MPMX20_03462 at 3654.349 kb on + strand, within MPMX20_03462 at 3654.357 kb on - strand, within MPMX20_03462 at 3654.366 kb on + strand, within MPMX20_03462 at 3654.369 kb on - strand, within MPMX20_03462 at 3654.394 kb on + strand, within MPMX20_03462 at 3654.394 kb on + strand, within MPMX20_03462 at 3654.426 kb on + strand, within MPMX20_03462 at 3654.426 kb on + strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.434 kb on - strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.436 kb on + strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.444 kb on - strand, within MPMX20_03462 at 3654.538 kb on + strand, within MPMX20_03462 at 3654.546 kb on - strand, within MPMX20_03462 at 3654.593 kb on + strand, within MPMX20_03462 at 3654.609 kb on + strand, within MPMX20_03462 at 3654.617 kb on - strand, within MPMX20_03462 at 3654.627 kb on - strand, within MPMX20_03462 at 3654.627 kb on - strand, within MPMX20_03462 at 3654.696 kb on - strand, within MPMX20_03462 at 3654.697 kb on + strand, within MPMX20_03462 at 3654.742 kb on + strand, within MPMX20_03462 at 3654.760 kb on + strand at 3654.770 kb on + strand at 3654.783 kb on + strand at 3654.783 kb on + strand at 3654.783 kb on + strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.791 kb on - strand at 3654.800 kb on + strand at 3654.818 kb on + strand at 3654.819 kb on + strand at 3654.826 kb on - strand at 3654.884 kb on + strand at 3654.884 kb on + strand at 3654.892 kb on - strand at 3654.929 kb on - strand, within MPMX20_03463 at 3654.959 kb on - strand, within MPMX20_03463 at 3654.980 kb on + strand, within MPMX20_03463 at 3654.997 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.040 kb on + strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.048 kb on - strand, within MPMX20_03463 at 3655.052 kb on + strand, within MPMX20_03463 at 3655.093 kb on + strand, within MPMX20_03463 at 3655.101 kb on - strand, within MPMX20_03463 at 3655.214 kb on + strand, within MPMX20_03463 at 3655.231 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.333 kb on + strand, within MPMX20_03463 at 3655.341 kb on - strand, within MPMX20_03463 at 3655.371 kb on - strand, within MPMX20_03463 at 3655.371 kb on - strand, within MPMX20_03463 at 3655.379 kb on + strand, within MPMX20_03463 at 3655.456 kb on - strand, within MPMX20_03463 at 3655.525 kb on + strand, within MPMX20_03463 at 3655.682 kb on - strand, within MPMX20_03463 at 3655.682 kb on - strand, within MPMX20_03463 at 3655.740 kb on - strand at 3655.744 kb on + strand at 3655.753 kb on + strand at 3655.772 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.782 kb on + strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.790 kb on - strand at 3655.796 kb on + strand at 3655.804 kb on - strand at 3655.826 kb on + strand at 3655.850 kb on - strand at 3655.850 kb on - strand at 3656.597 kb on + strand at 3656.629 kb on - strand at 3656.629 kb on - strand at 3656.740 kb on + strand at 3656.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,653,894 + +0.2 3,653,899 + -0.2 3,653,899 + -2.4 3,653,899 + +0.0 3,653,899 + +2.3 3,653,899 + -0.4 3,653,899 + -0.2 3,653,899 + -0.1 3,653,899 + -1.1 3,653,899 + +0.3 3,653,899 + +0.8 3,653,899 + -0.7 3,653,899 + +1.3 3,653,899 + +0.8 3,653,899 + -0.1 3,653,899 + -0.1 3,653,899 + -0.6 3,653,899 + -0.9 3,653,899 + -0.3 3,653,907 - +0.6 3,653,907 - -0.1 3,653,907 - -0.1 3,653,907 - -2.3 3,653,907 - -0.2 3,653,907 - -0.3 3,653,907 - -1.2 3,653,907 - -0.6 3,653,907 - -0.0 3,653,919 - +0.1 3,653,926 - +0.1 3,653,926 - +2.0 3,653,965 - -0.4 3,653,969 + +0.3 3,653,970 + +0.8 3,653,977 - +1.5 3,653,977 - +1.0 3,653,987 - -1.3 3,653,998 + -0.3 3,654,013 + +0.8 3,654,030 - -0.6 3,654,074 - +2.6 3,654,076 + +0.2 3,654,079 - -1.9 3,654,180 - MPMX20_03462 0.12 -1.5 3,654,197 - MPMX20_03462 0.14 -0.0 3,654,197 - MPMX20_03462 0.14 -0.0 3,654,312 - MPMX20_03462 0.30 +0.4 3,654,315 + MPMX20_03462 0.30 -3.6 3,654,322 + MPMX20_03462 0.31 +1.1 3,654,330 - MPMX20_03462 0.33 -0.1 3,654,349 + MPMX20_03462 0.35 -0.1 3,654,357 - MPMX20_03462 0.36 +2.2 3,654,366 + MPMX20_03462 0.37 +0.2 3,654,369 - MPMX20_03462 0.38 -0.7 3,654,394 + MPMX20_03462 0.41 +0.3 3,654,394 + MPMX20_03462 0.41 +0.2 3,654,426 + MPMX20_03462 0.46 -0.0 3,654,426 + MPMX20_03462 0.46 -1.0 3,654,434 - MPMX20_03462 0.47 -0.3 3,654,434 - MPMX20_03462 0.47 -0.0 3,654,434 - MPMX20_03462 0.47 +0.1 3,654,434 - MPMX20_03462 0.47 +0.4 3,654,434 - MPMX20_03462 0.47 +2.0 3,654,434 - MPMX20_03462 0.47 -0.8 3,654,436 + MPMX20_03462 0.47 -0.3 3,654,436 + MPMX20_03462 0.47 +0.2 3,654,436 + MPMX20_03462 0.47 +0.6 3,654,436 + MPMX20_03462 0.47 -0.3 3,654,436 + MPMX20_03462 0.47 -0.8 3,654,436 + MPMX20_03462 0.47 -0.1 3,654,436 + MPMX20_03462 0.47 -0.6 3,654,436 + MPMX20_03462 0.47 +0.2 3,654,444 - MPMX20_03462 0.48 -0.1 3,654,444 - MPMX20_03462 0.48 -1.7 3,654,444 - MPMX20_03462 0.48 +0.3 3,654,444 - MPMX20_03462 0.48 -0.3 3,654,538 + MPMX20_03462 0.61 -1.2 3,654,546 - MPMX20_03462 0.62 -0.2 3,654,593 + MPMX20_03462 0.68 +0.7 3,654,609 + MPMX20_03462 0.71 -0.8 3,654,617 - MPMX20_03462 0.72 -0.2 3,654,627 - MPMX20_03462 0.73 -0.8 3,654,627 - MPMX20_03462 0.73 -0.8 3,654,696 - MPMX20_03462 0.83 +0.3 3,654,697 + MPMX20_03462 0.83 -1.5 3,654,742 + MPMX20_03462 0.89 +0.1 3,654,760 + -0.1 3,654,770 + +0.1 3,654,783 + +0.2 3,654,783 + +3.3 3,654,783 + +0.1 3,654,791 - -0.4 3,654,791 - -0.6 3,654,791 - -1.0 3,654,791 - -0.4 3,654,800 + +0.4 3,654,818 + +0.6 3,654,819 + +0.4 3,654,826 - -0.0 3,654,884 + +1.0 3,654,884 + -2.0 3,654,892 - -0.6 3,654,929 - MPMX20_03463 0.11 -0.5 3,654,959 - MPMX20_03463 0.14 +0.7 3,654,980 + MPMX20_03463 0.16 -1.8 3,654,997 + MPMX20_03463 0.18 -2.9 3,655,040 + MPMX20_03463 0.22 -0.6 3,655,040 + MPMX20_03463 0.22 +0.6 3,655,040 + MPMX20_03463 0.22 +0.4 3,655,048 - MPMX20_03463 0.23 -2.2 3,655,048 - MPMX20_03463 0.23 +0.2 3,655,048 - MPMX20_03463 0.23 +1.1 3,655,048 - MPMX20_03463 0.23 -2.8 3,655,052 + MPMX20_03463 0.24 -1.6 3,655,093 + MPMX20_03463 0.28 +0.1 3,655,101 - MPMX20_03463 0.29 -0.5 3,655,214 + MPMX20_03463 0.40 -0.3 3,655,231 + MPMX20_03463 0.42 -1.0 3,655,333 + MPMX20_03463 0.52 -1.3 3,655,333 + MPMX20_03463 0.52 -2.5 3,655,333 + MPMX20_03463 0.52 +0.6 3,655,341 - MPMX20_03463 0.53 -0.0 3,655,371 - MPMX20_03463 0.56 -0.6 3,655,371 - MPMX20_03463 0.56 -1.8 3,655,379 + MPMX20_03463 0.57 -2.6 3,655,456 - MPMX20_03463 0.65 -1.9 3,655,525 + MPMX20_03463 0.72 -1.0 3,655,682 - MPMX20_03463 0.88 +0.4 3,655,682 - MPMX20_03463 0.88 -1.0 3,655,740 - -0.6 3,655,744 + -1.3 3,655,753 + -0.9 3,655,772 + -0.3 3,655,782 + +0.3 3,655,782 + -1.8 3,655,782 + -0.6 3,655,782 + -2.0 3,655,790 - -0.6 3,655,790 - -0.2 3,655,790 - -2.2 3,655,790 - -1.7 3,655,790 - -2.8 3,655,796 + +0.4 3,655,804 - -0.6 3,655,826 + +0.6 3,655,850 - -1.4 3,655,850 - +0.5 3,656,597 + -2.1 3,656,629 - +0.4 3,656,629 - +0.8 3,656,740 + +0.2 3,656,757 - -1.2
Or see this region's nucleotide sequence