Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03439 and MPMX20_03440 are separated by 15 nucleotides MPMX20_03440 and MPMX20_03441 are separated by 185 nucleotides MPMX20_03441 and MPMX20_03442 overlap by 4 nucleotides
MPMX20_03439: MPMX20_03439 - Signal peptidase I, at 3,626,051 to 3,627,025
_03439
MPMX20_03440: MPMX20_03440 - Elongation factor 4, at 3,627,041 to 3,628,840
_03440
MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502
_03441
MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452
_03442
Position (kb)
3627
3628
3629 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3626.085 kb on - strand at 3626.085 kb on - strand at 3626.085 kb on - strand at 3626.085 kb on - strand at 3626.108 kb on - strand at 3626.118 kb on - strand at 3626.118 kb on - strand at 3627.069 kb on - strand at 3627.227 kb on - strand, within MPMX20_03440 at 3627.369 kb on - strand, within MPMX20_03440 at 3627.406 kb on - strand, within MPMX20_03440 at 3627.568 kb on + strand, within MPMX20_03440 at 3627.574 kb on - strand, within MPMX20_03440 at 3627.590 kb on - strand, within MPMX20_03440 at 3627.624 kb on - strand, within MPMX20_03440 at 3627.624 kb on - strand, within MPMX20_03440 at 3627.624 kb on - strand, within MPMX20_03440 at 3627.624 kb on - strand, within MPMX20_03440 at 3627.742 kb on - strand, within MPMX20_03440 at 3627.779 kb on - strand, within MPMX20_03440 at 3627.839 kb on - strand, within MPMX20_03440 at 3627.933 kb on - strand, within MPMX20_03440 at 3627.933 kb on - strand, within MPMX20_03440 at 3627.933 kb on - strand, within MPMX20_03440 at 3627.949 kb on - strand, within MPMX20_03440 at 3628.024 kb on - strand, within MPMX20_03440 at 3628.494 kb on - strand, within MPMX20_03440 at 3628.496 kb on - strand, within MPMX20_03440 at 3628.599 kb on - strand, within MPMX20_03440 at 3628.608 kb on - strand, within MPMX20_03440 at 3628.882 kb on + strand at 3628.882 kb on + strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.890 kb on - strand at 3628.953 kb on - strand at 3629.026 kb on + strand at 3629.034 kb on + strand at 3629.062 kb on - strand at 3629.070 kb on + strand at 3629.076 kb on + strand, within MPMX20_03441 at 3629.100 kb on + strand, within MPMX20_03441 at 3629.121 kb on + strand, within MPMX20_03441 at 3629.121 kb on + strand, within MPMX20_03441 at 3629.129 kb on - strand, within MPMX20_03441 at 3629.135 kb on + strand, within MPMX20_03441 at 3629.143 kb on - strand, within MPMX20_03441 at 3629.154 kb on + strand, within MPMX20_03441 at 3629.162 kb on - strand, within MPMX20_03441 at 3629.198 kb on + strand, within MPMX20_03441 at 3629.206 kb on - strand, within MPMX20_03441 at 3629.236 kb on - strand, within MPMX20_03441 at 3629.255 kb on + strand, within MPMX20_03441 at 3629.281 kb on - strand, within MPMX20_03441 at 3629.383 kb on - strand, within MPMX20_03441 at 3629.439 kb on + strand, within MPMX20_03441 at 3629.516 kb on + strand at 3629.530 kb on + strand at 3629.571 kb on + strand at 3629.577 kb on - strand at 3629.594 kb on + strand at 3629.594 kb on + strand at 3629.641 kb on - strand, within MPMX20_03442 at 3629.641 kb on - strand, within MPMX20_03442 at 3629.753 kb on - strand, within MPMX20_03442 at 3629.818 kb on + strand, within MPMX20_03442
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,626,085 - -0.7 3,626,085 - -1.0 3,626,085 - +2.0 3,626,085 - -0.6 3,626,108 - -0.6 3,626,118 - -2.7 3,626,118 - -2.5 3,627,069 - +0.6 3,627,227 - MPMX20_03440 0.10 -2.6 3,627,369 - MPMX20_03440 0.18 -3.0 3,627,406 - MPMX20_03440 0.20 -0.0 3,627,568 + MPMX20_03440 0.29 -0.4 3,627,574 - MPMX20_03440 0.30 +0.1 3,627,590 - MPMX20_03440 0.30 +0.1 3,627,624 - MPMX20_03440 0.32 +0.4 3,627,624 - MPMX20_03440 0.32 -1.7 3,627,624 - MPMX20_03440 0.32 -1.6 3,627,624 - MPMX20_03440 0.32 -0.6 3,627,742 - MPMX20_03440 0.39 -0.8 3,627,779 - MPMX20_03440 0.41 -0.8 3,627,839 - MPMX20_03440 0.44 -0.7 3,627,933 - MPMX20_03440 0.50 -1.0 3,627,933 - MPMX20_03440 0.50 -1.2 3,627,933 - MPMX20_03440 0.50 -2.8 3,627,949 - MPMX20_03440 0.50 -2.9 3,628,024 - MPMX20_03440 0.55 -0.1 3,628,494 - MPMX20_03440 0.81 +2.0 3,628,496 - MPMX20_03440 0.81 -0.6 3,628,599 - MPMX20_03440 0.87 -1.7 3,628,608 - MPMX20_03440 0.87 -0.0 3,628,882 + -1.3 3,628,882 + -0.1 3,628,890 - -0.0 3,628,890 - -0.2 3,628,890 - +0.3 3,628,890 - +0.5 3,628,890 - -2.9 3,628,953 - +0.6 3,629,026 + +0.6 3,629,034 + +0.7 3,629,062 - -0.2 3,629,070 + +0.6 3,629,076 + MPMX20_03441 0.10 +1.4 3,629,100 + MPMX20_03441 0.16 -3.2 3,629,121 + MPMX20_03441 0.20 -0.2 3,629,121 + MPMX20_03441 0.20 -0.5 3,629,129 - MPMX20_03441 0.22 -0.4 3,629,135 + MPMX20_03441 0.23 -0.4 3,629,143 - MPMX20_03441 0.25 -2.0 3,629,154 + MPMX20_03441 0.27 -0.7 3,629,162 - MPMX20_03441 0.29 -0.2 3,629,198 + MPMX20_03441 0.36 -0.6 3,629,206 - MPMX20_03441 0.38 -1.1 3,629,236 - MPMX20_03441 0.44 -1.0 3,629,255 + MPMX20_03441 0.48 -2.4 3,629,281 - MPMX20_03441 0.53 -0.5 3,629,383 - MPMX20_03441 0.75 -1.8 3,629,439 + MPMX20_03441 0.87 -0.3 3,629,516 + -0.8 3,629,530 + -0.2 3,629,571 + +0.8 3,629,577 - -0.1 3,629,594 + +0.5 3,629,594 + +0.4 3,629,641 - MPMX20_03442 0.15 +0.2 3,629,641 - MPMX20_03442 0.15 -0.2 3,629,753 - MPMX20_03442 0.27 -0.3 3,629,818 + MPMX20_03442 0.33 +0.7
Or see this region's nucleotide sequence