Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03421 and MPMX20_03422 are separated by 94 nucleotides MPMX20_03422 and MPMX20_03423 are separated by 80 nucleotides
MPMX20_03421: MPMX20_03421 - Flavohemoprotein, at 3,606,244 to 3,607,434
_03421
MPMX20_03422: MPMX20_03422 - Nitrogen regulatory protein P-II, at 3,607,529 to 3,607,867
_03422
MPMX20_03423: MPMX20_03423 - Transcriptional regulatory protein QseF, at 3,607,948 to 3,609,285
_03423
Position (kb)
3607
3608 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3606.557 kb on + strand, within MPMX20_03421 at 3606.560 kb on - strand, within MPMX20_03421 at 3606.570 kb on + strand, within MPMX20_03421 at 3606.580 kb on + strand, within MPMX20_03421 at 3606.580 kb on + strand, within MPMX20_03421 at 3606.580 kb on + strand, within MPMX20_03421 at 3606.588 kb on - strand, within MPMX20_03421 at 3606.589 kb on - strand, within MPMX20_03421 at 3606.624 kb on + strand, within MPMX20_03421 at 3606.654 kb on + strand, within MPMX20_03421 at 3606.731 kb on + strand, within MPMX20_03421 at 3606.739 kb on + strand, within MPMX20_03421 at 3606.814 kb on - strand, within MPMX20_03421 at 3606.824 kb on + strand, within MPMX20_03421 at 3606.870 kb on - strand, within MPMX20_03421 at 3606.909 kb on - strand, within MPMX20_03421 at 3607.129 kb on + strand, within MPMX20_03421 at 3607.201 kb on + strand, within MPMX20_03421 at 3607.236 kb on - strand, within MPMX20_03421 at 3607.257 kb on - strand, within MPMX20_03421 at 3607.267 kb on - strand, within MPMX20_03421 at 3607.317 kb on + strand at 3607.340 kb on + strand at 3607.340 kb on + strand at 3607.419 kb on + strand at 3607.419 kb on + strand at 3607.445 kb on + strand at 3607.453 kb on - strand at 3607.453 kb on - strand at 3607.487 kb on + strand at 3607.487 kb on + strand at 3607.495 kb on - strand at 3607.627 kb on - strand, within MPMX20_03422 at 3607.718 kb on - strand, within MPMX20_03422 at 3607.780 kb on + strand, within MPMX20_03422 at 3607.820 kb on - strand, within MPMX20_03422 at 3607.888 kb on + strand at 3607.896 kb on - strand at 3607.920 kb on + strand at 3607.920 kb on + strand at 3607.930 kb on - strand at 3607.945 kb on + strand at 3608.012 kb on - strand at 3608.047 kb on + strand at 3608.080 kb on + strand at 3608.088 kb on - strand, within MPMX20_03423 at 3608.147 kb on + strand, within MPMX20_03423 at 3608.165 kb on - strand, within MPMX20_03423 at 3608.187 kb on + strand, within MPMX20_03423 at 3608.190 kb on - strand, within MPMX20_03423 at 3608.199 kb on + strand, within MPMX20_03423 at 3608.207 kb on - strand, within MPMX20_03423 at 3608.291 kb on + strand, within MPMX20_03423 at 3608.299 kb on - strand, within MPMX20_03423 at 3608.299 kb on - strand, within MPMX20_03423 at 3608.322 kb on - strand, within MPMX20_03423 at 3608.389 kb on + strand, within MPMX20_03423 at 3608.398 kb on + strand, within MPMX20_03423 at 3608.540 kb on + strand, within MPMX20_03423 at 3608.548 kb on - strand, within MPMX20_03423 at 3608.566 kb on - strand, within MPMX20_03423 at 3608.670 kb on + strand, within MPMX20_03423 at 3608.695 kb on - strand, within MPMX20_03423 at 3608.746 kb on + strand, within MPMX20_03423 at 3608.746 kb on + strand, within MPMX20_03423 at 3608.768 kb on - strand, within MPMX20_03423 at 3608.827 kb on + strand, within MPMX20_03423
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,606,557 + MPMX20_03421 0.26 -0.5 3,606,560 - MPMX20_03421 0.27 -1.4 3,606,570 + MPMX20_03421 0.27 -1.2 3,606,580 + MPMX20_03421 0.28 -0.1 3,606,580 + MPMX20_03421 0.28 +0.6 3,606,580 + MPMX20_03421 0.28 +0.1 3,606,588 - MPMX20_03421 0.29 -0.1 3,606,589 - MPMX20_03421 0.29 -0.3 3,606,624 + MPMX20_03421 0.32 +1.3 3,606,654 + MPMX20_03421 0.34 +0.5 3,606,731 + MPMX20_03421 0.41 -0.6 3,606,739 + MPMX20_03421 0.42 +0.3 3,606,814 - MPMX20_03421 0.48 -1.4 3,606,824 + MPMX20_03421 0.49 -1.5 3,606,870 - MPMX20_03421 0.53 -0.0 3,606,909 - MPMX20_03421 0.56 -1.4 3,607,129 + MPMX20_03421 0.74 -0.6 3,607,201 + MPMX20_03421 0.80 -0.8 3,607,236 - MPMX20_03421 0.83 -2.3 3,607,257 - MPMX20_03421 0.85 -1.2 3,607,267 - MPMX20_03421 0.86 +0.5 3,607,317 + +0.8 3,607,340 + -0.5 3,607,340 + -0.4 3,607,419 + -0.2 3,607,419 + +0.2 3,607,445 + -0.2 3,607,453 - +0.5 3,607,453 - -1.1 3,607,487 + -0.4 3,607,487 + -2.5 3,607,495 - -1.7 3,607,627 - MPMX20_03422 0.29 -0.4 3,607,718 - MPMX20_03422 0.56 -1.0 3,607,780 + MPMX20_03422 0.74 -1.0 3,607,820 - MPMX20_03422 0.86 -1.2 3,607,888 + +3.0 3,607,896 - +0.0 3,607,920 + +0.7 3,607,920 + +0.5 3,607,930 - -1.6 3,607,945 + +1.2 3,608,012 - -0.4 3,608,047 + +0.1 3,608,080 + +2.4 3,608,088 - MPMX20_03423 0.10 -0.3 3,608,147 + MPMX20_03423 0.15 +0.2 3,608,165 - MPMX20_03423 0.16 -1.3 3,608,187 + MPMX20_03423 0.18 -0.3 3,608,190 - MPMX20_03423 0.18 -0.3 3,608,199 + MPMX20_03423 0.19 +0.0 3,608,207 - MPMX20_03423 0.19 -0.6 3,608,291 + MPMX20_03423 0.26 +0.3 3,608,299 - MPMX20_03423 0.26 -0.2 3,608,299 - MPMX20_03423 0.26 -0.1 3,608,322 - MPMX20_03423 0.28 +0.7 3,608,389 + MPMX20_03423 0.33 +2.5 3,608,398 + MPMX20_03423 0.34 -0.5 3,608,540 + MPMX20_03423 0.44 +1.7 3,608,548 - MPMX20_03423 0.45 +0.2 3,608,566 - MPMX20_03423 0.46 -0.1 3,608,670 + MPMX20_03423 0.54 -0.6 3,608,695 - MPMX20_03423 0.56 -1.2 3,608,746 + MPMX20_03423 0.60 +0.7 3,608,746 + MPMX20_03423 0.60 +0.2 3,608,768 - MPMX20_03423 0.61 +0.2 3,608,827 + MPMX20_03423 0.66 -0.2
Or see this region's nucleotide sequence