Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03407 and MPMX20_03408 are separated by 14 nucleotides MPMX20_03408 and MPMX20_03409 are separated by 76 nucleotides MPMX20_03409 and MPMX20_03410 are separated by 13 nucleotides MPMX20_03410 and MPMX20_03411 are separated by 23 nucleotides
MPMX20_03407: MPMX20_03407 - Chaperone protein HscA, at 3,592,973 to 3,594,823
_03407
MPMX20_03408: MPMX20_03408 - Co-chaperone protein HscB, at 3,594,838 to 3,595,353
_03408
MPMX20_03409: MPMX20_03409 - Iron-binding protein IscA, at 3,595,430 to 3,595,753
_03409
MPMX20_03410: MPMX20_03410 - Iron-sulfur cluster assembly scaffold protein IscU, at 3,595,767 to 3,596,153
_03410
MPMX20_03411: MPMX20_03411 - Cysteine desulfurase IscS, at 3,596,177 to 3,597,391
_03411
Position (kb)
3595
3596 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3594.447 kb on + strand, within MPMX20_03407 at 3594.455 kb on - strand, within MPMX20_03407 at 3594.530 kb on + strand, within MPMX20_03407 at 3594.538 kb on - strand, within MPMX20_03407 at 3594.611 kb on - strand, within MPMX20_03407 at 3594.748 kb on + strand at 3594.788 kb on + strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.875 kb on - strand at 3594.877 kb on + strand at 3594.937 kb on - strand, within MPMX20_03408 at 3594.974 kb on + strand, within MPMX20_03408 at 3595.017 kb on - strand, within MPMX20_03408 at 3595.025 kb on + strand, within MPMX20_03408 at 3595.159 kb on - strand, within MPMX20_03408 at 3595.186 kb on - strand, within MPMX20_03408 at 3595.219 kb on + strand, within MPMX20_03408 at 3595.328 kb on + strand at 3595.336 kb on - strand at 3595.450 kb on - strand at 3595.464 kb on + strand, within MPMX20_03409 at 3595.467 kb on - strand, within MPMX20_03409 at 3595.528 kb on - strand, within MPMX20_03409 at 3595.557 kb on - strand, within MPMX20_03409 at 3595.585 kb on - strand, within MPMX20_03409 at 3595.633 kb on - strand, within MPMX20_03409 at 3595.687 kb on - strand, within MPMX20_03409 at 3595.749 kb on - strand at 3595.749 kb on - strand at 3595.983 kb on - strand, within MPMX20_03410 at 3596.199 kb on - strand at 3596.199 kb on - strand at 3596.199 kb on - strand at 3596.199 kb on - strand at 3596.201 kb on + strand at 3596.201 kb on + strand at 3596.201 kb on + strand at 3596.201 kb on + strand at 3596.201 kb on + strand at 3596.226 kb on - strand at 3596.245 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,594,447 + MPMX20_03407 0.80 +0.4 3,594,455 - MPMX20_03407 0.80 -2.0 3,594,530 + MPMX20_03407 0.84 -0.0 3,594,538 - MPMX20_03407 0.85 +2.0 3,594,611 - MPMX20_03407 0.88 -0.8 3,594,748 + -0.0 3,594,788 + +1.0 3,594,875 - +0.6 3,594,875 - +3.0 3,594,875 - -0.0 3,594,875 - -0.6 3,594,875 - -0.7 3,594,875 - -0.0 3,594,875 - -0.1 3,594,875 - +0.8 3,594,877 + -1.4 3,594,937 - MPMX20_03408 0.19 -0.4 3,594,974 + MPMX20_03408 0.26 -0.0 3,595,017 - MPMX20_03408 0.35 -1.9 3,595,025 + MPMX20_03408 0.36 -0.4 3,595,159 - MPMX20_03408 0.62 -2.5 3,595,186 - MPMX20_03408 0.67 -1.9 3,595,219 + MPMX20_03408 0.74 +0.4 3,595,328 + -0.6 3,595,336 - -2.6 3,595,450 - -1.2 3,595,464 + MPMX20_03409 0.10 -1.2 3,595,467 - MPMX20_03409 0.11 -1.8 3,595,528 - MPMX20_03409 0.30 +0.6 3,595,557 - MPMX20_03409 0.39 -0.4 3,595,585 - MPMX20_03409 0.48 -0.0 3,595,633 - MPMX20_03409 0.63 -0.4 3,595,687 - MPMX20_03409 0.79 -0.4 3,595,749 - +2.0 3,595,749 - +2.0 3,595,983 - MPMX20_03410 0.56 +0.9 3,596,199 - -1.4 3,596,199 - +1.5 3,596,199 - -1.3 3,596,199 - -0.1 3,596,201 + -0.0 3,596,201 + -0.0 3,596,201 + -0.0 3,596,201 + +0.4 3,596,201 + -0.8 3,596,226 - -3.0 3,596,245 + -0.9
Or see this region's nucleotide sequence