Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03362 and MPMX20_03363 are separated by 11 nucleotides MPMX20_03363 and MPMX20_03364 are separated by 45 nucleotides MPMX20_03364 and MPMX20_03365 are separated by 113 nucleotides
MPMX20_03362: MPMX20_03362 - hypothetical protein, at 3,539,022 to 3,539,489
_03362
MPMX20_03363: MPMX20_03363 - hypothetical protein, at 3,539,501 to 3,540,244
_03363
MPMX20_03364: MPMX20_03364 - hypothetical protein, at 3,540,290 to 3,540,736
_03364
MPMX20_03365: MPMX20_03365 - Purine ribonucleoside efflux pump NepI, at 3,540,850 to 3,542,067
_03365
Position (kb)
3540
3541 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3539.300 kb on + strand, within MPMX20_03362 at 3539.308 kb on - strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.325 kb on + strand, within MPMX20_03362 at 3539.378 kb on - strand, within MPMX20_03362 at 3539.387 kb on + strand, within MPMX20_03362 at 3539.420 kb on + strand, within MPMX20_03362 at 3539.519 kb on - strand at 3539.519 kb on - strand at 3539.524 kb on - strand at 3539.744 kb on - strand, within MPMX20_03363 at 3539.797 kb on - strand, within MPMX20_03363 at 3539.803 kb on + strand, within MPMX20_03363 at 3539.872 kb on + strand, within MPMX20_03363 at 3539.874 kb on - strand, within MPMX20_03363 at 3539.882 kb on + strand, within MPMX20_03363 at 3539.979 kb on + strand, within MPMX20_03363 at 3540.014 kb on - strand, within MPMX20_03363 at 3540.024 kb on - strand, within MPMX20_03363 at 3540.078 kb on + strand, within MPMX20_03363 at 3540.111 kb on + strand, within MPMX20_03363 at 3540.180 kb on + strand at 3540.226 kb on + strand at 3540.248 kb on + strand at 3540.280 kb on - strand at 3540.290 kb on - strand at 3540.307 kb on + strand at 3540.315 kb on - strand at 3540.333 kb on + strand at 3540.443 kb on - strand, within MPMX20_03364 at 3540.581 kb on - strand, within MPMX20_03364 at 3540.679 kb on + strand, within MPMX20_03364 at 3540.738 kb on + strand at 3540.741 kb on - strand at 3540.746 kb on - strand at 3540.746 kb on - strand at 3540.746 kb on - strand at 3540.841 kb on + strand at 3540.859 kb on - strand at 3540.859 kb on - strand at 3540.859 kb on - strand at 3540.868 kb on - strand at 3540.958 kb on - strand at 3540.958 kb on - strand at 3540.958 kb on - strand at 3540.974 kb on - strand, within MPMX20_03365 at 3541.056 kb on + strand, within MPMX20_03365 at 3541.066 kb on + strand, within MPMX20_03365 at 3541.138 kb on + strand, within MPMX20_03365 at 3541.147 kb on - strand, within MPMX20_03365 at 3541.166 kb on - strand, within MPMX20_03365 at 3541.239 kb on - strand, within MPMX20_03365 at 3541.282 kb on + strand, within MPMX20_03365 at 3541.282 kb on + strand, within MPMX20_03365 at 3541.301 kb on + strand, within MPMX20_03365 at 3541.306 kb on + strand, within MPMX20_03365 at 3541.306 kb on + strand, within MPMX20_03365 at 3541.395 kb on - strand, within MPMX20_03365 at 3541.441 kb on + strand, within MPMX20_03365 at 3541.444 kb on - strand, within MPMX20_03365 at 3541.444 kb on - strand, within MPMX20_03365 at 3541.444 kb on - strand, within MPMX20_03365 at 3541.496 kb on + strand, within MPMX20_03365 at 3541.501 kb on + strand, within MPMX20_03365 at 3541.509 kb on - strand, within MPMX20_03365 at 3541.555 kb on + strand, within MPMX20_03365 at 3541.597 kb on - strand, within MPMX20_03365 at 3541.600 kb on - strand, within MPMX20_03365 at 3541.600 kb on - strand, within MPMX20_03365 at 3541.618 kb on + strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.626 kb on - strand, within MPMX20_03365 at 3541.657 kb on - strand, within MPMX20_03365 at 3541.736 kb on + strand, within MPMX20_03365
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,539,300 + MPMX20_03362 0.59 -1.4 3,539,308 - MPMX20_03362 0.61 -0.3 3,539,325 + MPMX20_03362 0.65 +1.1 3,539,325 + MPMX20_03362 0.65 -0.5 3,539,325 + MPMX20_03362 0.65 +0.5 3,539,325 + MPMX20_03362 0.65 +0.2 3,539,325 + MPMX20_03362 0.65 -0.1 3,539,378 - MPMX20_03362 0.76 +0.1 3,539,387 + MPMX20_03362 0.78 -2.1 3,539,420 + MPMX20_03362 0.85 -0.5 3,539,519 - +0.9 3,539,519 - -0.2 3,539,524 - +0.3 3,539,744 - MPMX20_03363 0.33 -0.8 3,539,797 - MPMX20_03363 0.40 +1.5 3,539,803 + MPMX20_03363 0.41 +0.8 3,539,872 + MPMX20_03363 0.50 +0.7 3,539,874 - MPMX20_03363 0.50 -0.7 3,539,882 + MPMX20_03363 0.51 -1.1 3,539,979 + MPMX20_03363 0.64 +0.6 3,540,014 - MPMX20_03363 0.69 +0.3 3,540,024 - MPMX20_03363 0.70 -0.5 3,540,078 + MPMX20_03363 0.78 -0.7 3,540,111 + MPMX20_03363 0.82 -0.7 3,540,180 + +0.6 3,540,226 + -0.8 3,540,248 + +1.1 3,540,280 - +0.9 3,540,290 - -0.1 3,540,307 + -0.7 3,540,315 - -0.4 3,540,333 + -0.7 3,540,443 - MPMX20_03364 0.34 -1.6 3,540,581 - MPMX20_03364 0.65 -1.4 3,540,679 + MPMX20_03364 0.87 -0.9 3,540,738 + +0.5 3,540,741 - -0.1 3,540,746 - +1.8 3,540,746 - -0.4 3,540,746 - -0.6 3,540,841 + -0.2 3,540,859 - -1.1 3,540,859 - -0.4 3,540,859 - -0.0 3,540,868 - +0.3 3,540,958 - +0.1 3,540,958 - +0.5 3,540,958 - +0.6 3,540,974 - MPMX20_03365 0.10 -0.4 3,541,056 + MPMX20_03365 0.17 -0.8 3,541,066 + MPMX20_03365 0.18 -0.1 3,541,138 + MPMX20_03365 0.24 -1.3 3,541,147 - MPMX20_03365 0.24 -0.7 3,541,166 - MPMX20_03365 0.26 -1.2 3,541,239 - MPMX20_03365 0.32 +0.9 3,541,282 + MPMX20_03365 0.35 +0.8 3,541,282 + MPMX20_03365 0.35 -2.3 3,541,301 + MPMX20_03365 0.37 -0.4 3,541,306 + MPMX20_03365 0.37 +0.3 3,541,306 + MPMX20_03365 0.37 -0.9 3,541,395 - MPMX20_03365 0.45 -0.1 3,541,441 + MPMX20_03365 0.49 +0.4 3,541,444 - MPMX20_03365 0.49 +0.7 3,541,444 - MPMX20_03365 0.49 -1.0 3,541,444 - MPMX20_03365 0.49 -3.7 3,541,496 + MPMX20_03365 0.53 +0.1 3,541,501 + MPMX20_03365 0.53 +0.1 3,541,509 - MPMX20_03365 0.54 -0.3 3,541,555 + MPMX20_03365 0.58 -1.4 3,541,597 - MPMX20_03365 0.61 -2.1 3,541,600 - MPMX20_03365 0.62 -0.1 3,541,600 - MPMX20_03365 0.62 -0.5 3,541,618 + MPMX20_03365 0.63 -0.0 3,541,626 - MPMX20_03365 0.64 +1.3 3,541,626 - MPMX20_03365 0.64 -0.1 3,541,626 - MPMX20_03365 0.64 -0.5 3,541,626 - MPMX20_03365 0.64 -0.0 3,541,657 - MPMX20_03365 0.66 +0.1 3,541,736 + MPMX20_03365 0.73 -1.2
Or see this region's nucleotide sequence