Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03284 and MPMX20_03285 are separated by 127 nucleotides MPMX20_03285 and MPMX20_03286 are separated by 61 nucleotides
MPMX20_03284: MPMX20_03284 - L-glyceraldehyde 3-phosphate reductase, at 3,456,997 to 3,457,995
_03284
MPMX20_03285: MPMX20_03285 - hypothetical protein, at 3,458,123 to 3,458,470
_03285
MPMX20_03286: MPMX20_03286 - Divalent metal cation transporter MntH, at 3,458,532 to 3,459,770
_03286
Position (kb)
3458
3459 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3457.209 kb on - strand, within MPMX20_03284 at 3457.283 kb on - strand, within MPMX20_03284 at 3457.290 kb on + strand, within MPMX20_03284 at 3457.298 kb on - strand, within MPMX20_03284 at 3457.298 kb on - strand, within MPMX20_03284 at 3457.311 kb on + strand, within MPMX20_03284 at 3457.337 kb on + strand, within MPMX20_03284 at 3457.372 kb on - strand, within MPMX20_03284 at 3457.388 kb on - strand, within MPMX20_03284 at 3457.434 kb on + strand, within MPMX20_03284 at 3457.442 kb on + strand, within MPMX20_03284 at 3457.462 kb on + strand, within MPMX20_03284 at 3457.474 kb on + strand, within MPMX20_03284 at 3457.513 kb on + strand, within MPMX20_03284 at 3457.521 kb on - strand, within MPMX20_03284 at 3457.548 kb on + strand, within MPMX20_03284 at 3457.590 kb on + strand, within MPMX20_03284 at 3457.598 kb on - strand, within MPMX20_03284 at 3457.748 kb on + strand, within MPMX20_03284 at 3457.748 kb on + strand, within MPMX20_03284 at 3457.850 kb on - strand, within MPMX20_03284 at 3457.871 kb on + strand, within MPMX20_03284 at 3457.871 kb on + strand, within MPMX20_03284 at 3457.881 kb on + strand, within MPMX20_03284 at 3457.975 kb on + strand at 3457.975 kb on + strand at 3457.983 kb on - strand at 3457.985 kb on + strand at 3457.985 kb on + strand at 3458.119 kb on + strand at 3458.385 kb on - strand, within MPMX20_03285 at 3458.441 kb on + strand at 3458.450 kb on + strand at 3458.538 kb on + strand at 3458.543 kb on + strand at 3458.546 kb on - strand at 3458.546 kb on - strand at 3458.546 kb on - strand at 3458.548 kb on + strand at 3458.625 kb on + strand at 3458.625 kb on + strand at 3458.625 kb on + strand at 3458.625 kb on + strand at 3458.689 kb on - strand, within MPMX20_03286 at 3458.739 kb on + strand, within MPMX20_03286 at 3458.794 kb on + strand, within MPMX20_03286 at 3458.824 kb on - strand, within MPMX20_03286 at 3458.861 kb on - strand, within MPMX20_03286 at 3458.869 kb on - strand, within MPMX20_03286 at 3458.936 kb on + strand, within MPMX20_03286 at 3458.941 kb on + strand, within MPMX20_03286 at 3458.943 kb on - strand, within MPMX20_03286 at 3459.010 kb on + strand, within MPMX20_03286 at 3459.091 kb on - strand, within MPMX20_03286 at 3459.159 kb on - strand, within MPMX20_03286 at 3459.193 kb on + strand, within MPMX20_03286 at 3459.193 kb on - strand, within MPMX20_03286 at 3459.193 kb on - strand, within MPMX20_03286 at 3459.273 kb on - strand, within MPMX20_03286 at 3459.273 kb on - strand, within MPMX20_03286 at 3459.364 kb on + strand, within MPMX20_03286 at 3459.379 kb on + strand, within MPMX20_03286 at 3459.387 kb on - strand, within MPMX20_03286 at 3459.397 kb on - strand, within MPMX20_03286
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,457,209 - MPMX20_03284 0.21 +0.8 3,457,283 - MPMX20_03284 0.29 +0.4 3,457,290 + MPMX20_03284 0.29 -0.3 3,457,298 - MPMX20_03284 0.30 +0.5 3,457,298 - MPMX20_03284 0.30 +0.4 3,457,311 + MPMX20_03284 0.31 +0.6 3,457,337 + MPMX20_03284 0.34 +2.9 3,457,372 - MPMX20_03284 0.38 +0.1 3,457,388 - MPMX20_03284 0.39 -0.6 3,457,434 + MPMX20_03284 0.44 +0.6 3,457,442 + MPMX20_03284 0.45 -0.1 3,457,462 + MPMX20_03284 0.47 +0.3 3,457,474 + MPMX20_03284 0.48 -1.3 3,457,513 + MPMX20_03284 0.52 -1.2 3,457,521 - MPMX20_03284 0.52 -0.2 3,457,548 + MPMX20_03284 0.55 -0.2 3,457,590 + MPMX20_03284 0.59 +0.5 3,457,598 - MPMX20_03284 0.60 -0.1 3,457,748 + MPMX20_03284 0.75 -0.0 3,457,748 + MPMX20_03284 0.75 -1.2 3,457,850 - MPMX20_03284 0.85 -0.1 3,457,871 + MPMX20_03284 0.87 +0.0 3,457,871 + MPMX20_03284 0.87 -0.4 3,457,881 + MPMX20_03284 0.88 -0.4 3,457,975 + -2.0 3,457,975 + +2.5 3,457,983 - -1.7 3,457,985 + +0.6 3,457,985 + +0.4 3,458,119 + +0.2 3,458,385 - MPMX20_03285 0.75 -1.3 3,458,441 + +0.0 3,458,450 + -0.2 3,458,538 + +0.9 3,458,543 + +0.6 3,458,546 - +0.1 3,458,546 - -0.4 3,458,546 - -0.5 3,458,548 + -1.4 3,458,625 + -0.5 3,458,625 + -0.2 3,458,625 + -0.0 3,458,625 + -0.1 3,458,689 - MPMX20_03286 0.13 -0.9 3,458,739 + MPMX20_03286 0.17 -1.6 3,458,794 + MPMX20_03286 0.21 +0.3 3,458,824 - MPMX20_03286 0.24 -0.4 3,458,861 - MPMX20_03286 0.27 -2.2 3,458,869 - MPMX20_03286 0.27 -0.0 3,458,936 + MPMX20_03286 0.33 -0.7 3,458,941 + MPMX20_03286 0.33 -1.1 3,458,943 - MPMX20_03286 0.33 -1.5 3,459,010 + MPMX20_03286 0.39 -2.0 3,459,091 - MPMX20_03286 0.45 +0.9 3,459,159 - MPMX20_03286 0.51 -0.6 3,459,193 + MPMX20_03286 0.53 -1.6 3,459,193 - MPMX20_03286 0.53 -0.6 3,459,193 - MPMX20_03286 0.53 -0.2 3,459,273 - MPMX20_03286 0.60 -0.1 3,459,273 - MPMX20_03286 0.60 -0.2 3,459,364 + MPMX20_03286 0.67 -0.6 3,459,379 + MPMX20_03286 0.68 -0.5 3,459,387 - MPMX20_03286 0.69 +0.3 3,459,397 - MPMX20_03286 0.70 -0.5
Or see this region's nucleotide sequence