Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03267

Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03265 and MPMX20_03266 are separated by 145 nucleotidesMPMX20_03266 and MPMX20_03267 are separated by 48 nucleotidesMPMX20_03267 and MPMX20_03268 are separated by 209 nucleotides MPMX20_03265: MPMX20_03265 - 50S ribosomal protein L3 glutamine methyltransferase, at 3,435,432 to 3,436,364 _03265 MPMX20_03266: MPMX20_03266 - Endonuclease MutS2, at 3,436,510 to 3,437,061 _03266 MPMX20_03267: MPMX20_03267 - Phosphohistidine phosphatase SixA, at 3,437,110 to 3,437,595 _03267 MPMX20_03268: MPMX20_03268 - Fatty acid oxidation complex subunit alpha, at 3,437,805 to 3,439,952 _03268 Position (kb) 3437 3438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3436.158 kb on + strand, within MPMX20_03265at 3436.158 kb on + strand, within MPMX20_03265at 3436.171 kb on + strand, within MPMX20_03265at 3436.245 kb on - strand, within MPMX20_03265at 3436.313 kb on + strandat 3436.547 kb on - strandat 3436.560 kb on + strandat 3436.561 kb on - strandat 3436.590 kb on + strand, within MPMX20_03266at 3436.640 kb on - strand, within MPMX20_03266at 3436.749 kb on - strand, within MPMX20_03266at 3436.814 kb on + strand, within MPMX20_03266at 3436.822 kb on - strand, within MPMX20_03266at 3436.824 kb on + strand, within MPMX20_03266at 3437.000 kb on - strand, within MPMX20_03266at 3437.050 kb on + strandat 3437.080 kb on + strandat 3437.083 kb on - strandat 3437.239 kb on - strand, within MPMX20_03267at 3437.239 kb on - strand, within MPMX20_03267at 3437.281 kb on + strand, within MPMX20_03267at 3437.286 kb on + strand, within MPMX20_03267at 3437.373 kb on + strand, within MPMX20_03267at 3437.401 kb on + strand, within MPMX20_03267at 3437.436 kb on + strand, within MPMX20_03267at 3437.780 kb on + strandat 3437.794 kb on - strandat 3437.882 kb on + strandat 3437.896 kb on - strandat 3437.915 kb on - strandat 3437.931 kb on + strandat 3437.950 kb on - strandat 3437.950 kb on - strandat 3438.047 kb on + strand, within MPMX20_03268at 3438.047 kb on + strand, within MPMX20_03268at 3438.055 kb on - strand, within MPMX20_03268at 3438.055 kb on - strand, within MPMX20_03268at 3438.055 kb on - strand, within MPMX20_03268at 3438.055 kb on - strand, within MPMX20_03268at 3438.055 kb on - strand, within MPMX20_03268at 3438.075 kb on - strand, within MPMX20_03268at 3438.080 kb on + strand, within MPMX20_03268at 3438.090 kb on + strand, within MPMX20_03268at 3438.090 kb on + strand, within MPMX20_03268at 3438.090 kb on + strand, within MPMX20_03268at 3438.092 kb on + strand, within MPMX20_03268at 3438.098 kb on - strand, within MPMX20_03268at 3438.125 kb on + strand, within MPMX20_03268at 3438.261 kb on + strand, within MPMX20_03268at 3438.296 kb on + strand, within MPMX20_03268at 3438.366 kb on - strand, within MPMX20_03268at 3438.384 kb on - strand, within MPMX20_03268at 3438.497 kb on + strand, within MPMX20_03268at 3438.559 kb on + strand, within MPMX20_03268at 3438.572 kb on + strand, within MPMX20_03268at 3438.585 kb on - strand, within MPMX20_03268

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
remove
3,436,158 + MPMX20_03265 0.78 -0.6
3,436,158 + MPMX20_03265 0.78 -1.0
3,436,171 + MPMX20_03265 0.79 -0.6
3,436,245 - MPMX20_03265 0.87 -0.1
3,436,313 + +1.1
3,436,547 - -1.1
3,436,560 + -1.4
3,436,561 - -0.3
3,436,590 + MPMX20_03266 0.14 +0.7
3,436,640 - MPMX20_03266 0.24 -0.3
3,436,749 - MPMX20_03266 0.43 +2.1
3,436,814 + MPMX20_03266 0.55 -0.5
3,436,822 - MPMX20_03266 0.57 -0.8
3,436,824 + MPMX20_03266 0.57 +0.4
3,437,000 - MPMX20_03266 0.89 -0.1
3,437,050 + +0.5
3,437,080 + +0.3
3,437,083 - -0.1
3,437,239 - MPMX20_03267 0.27 -1.9
3,437,239 - MPMX20_03267 0.27 +0.1
3,437,281 + MPMX20_03267 0.35 -0.6
3,437,286 + MPMX20_03267 0.36 -3.5
3,437,373 + MPMX20_03267 0.54 -0.6
3,437,401 + MPMX20_03267 0.60 -3.0
3,437,436 + MPMX20_03267 0.67 -2.8
3,437,780 + -1.0
3,437,794 - -0.7
3,437,882 + +0.3
3,437,896 - -0.8
3,437,915 - -0.1
3,437,931 + +0.5
3,437,950 - -0.9
3,437,950 - -0.3
3,438,047 + MPMX20_03268 0.11 -0.2
3,438,047 + MPMX20_03268 0.11 +1.6
3,438,055 - MPMX20_03268 0.12 -0.4
3,438,055 - MPMX20_03268 0.12 -0.0
3,438,055 - MPMX20_03268 0.12 -0.5
3,438,055 - MPMX20_03268 0.12 +0.1
3,438,055 - MPMX20_03268 0.12 +0.6
3,438,075 - MPMX20_03268 0.13 +0.5
3,438,080 + MPMX20_03268 0.13 +3.2
3,438,090 + MPMX20_03268 0.13 +0.5
3,438,090 + MPMX20_03268 0.13 +1.1
3,438,090 + MPMX20_03268 0.13 -0.1
3,438,092 + MPMX20_03268 0.13 -0.1
3,438,098 - MPMX20_03268 0.14 -0.4
3,438,125 + MPMX20_03268 0.15 +0.2
3,438,261 + MPMX20_03268 0.21 +0.1
3,438,296 + MPMX20_03268 0.23 -0.1
3,438,366 - MPMX20_03268 0.26 +0.2
3,438,384 - MPMX20_03268 0.27 +0.6
3,438,497 + MPMX20_03268 0.32 +0.4
3,438,559 + MPMX20_03268 0.35 -0.4
3,438,572 + MPMX20_03268 0.36 -0.4
3,438,585 - MPMX20_03268 0.36 -0.9

Or see this region's nucleotide sequence