Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03262 and MPMX20_03263 overlap by 1 nucleotides MPMX20_03263 and MPMX20_03264 are separated by 2 nucleotides MPMX20_03264 and MPMX20_03265 are separated by 60 nucleotides
MPMX20_03262: MPMX20_03262 - putative membrane transporter protein YfcA, at 3,432,650 to 3,433,459
_03262
MPMX20_03263: MPMX20_03263 - Penicillin-insensitive murein endopeptidase, at 3,433,459 to 3,434,283
_03263
MPMX20_03264: MPMX20_03264 - Chorismate synthase, at 3,434,286 to 3,435,371
_03264
MPMX20_03265: MPMX20_03265 - 50S ribosomal protein L3 glutamine methyltransferase, at 3,435,432 to 3,436,364
_03265
Position (kb)
3434
3435
3436 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3433.287 kb on - strand, within MPMX20_03262 at 3433.287 kb on - strand, within MPMX20_03262 at 3433.516 kb on + strand at 3433.526 kb on + strand at 3433.526 kb on + strand at 3433.527 kb on + strand at 3433.534 kb on - strand at 3433.534 kb on - strand at 3433.535 kb on - strand at 3433.551 kb on + strand, within MPMX20_03263 at 3433.569 kb on + strand, within MPMX20_03263 at 3433.582 kb on + strand, within MPMX20_03263 at 3433.639 kb on + strand, within MPMX20_03263 at 3433.667 kb on + strand, within MPMX20_03263 at 3433.668 kb on + strand, within MPMX20_03263 at 3433.787 kb on + strand, within MPMX20_03263 at 3433.961 kb on + strand, within MPMX20_03263 at 3434.004 kb on + strand, within MPMX20_03263 at 3434.016 kb on + strand, within MPMX20_03263 at 3434.024 kb on - strand, within MPMX20_03263 at 3434.024 kb on - strand, within MPMX20_03263 at 3434.024 kb on - strand, within MPMX20_03263 at 3434.046 kb on - strand, within MPMX20_03263 at 3434.059 kb on + strand, within MPMX20_03263 at 3434.122 kb on - strand, within MPMX20_03263 at 3434.133 kb on - strand, within MPMX20_03263 at 3434.148 kb on + strand, within MPMX20_03263 at 3434.156 kb on - strand, within MPMX20_03263 at 3434.210 kb on - strand at 3434.253 kb on - strand at 3434.474 kb on + strand, within MPMX20_03264 at 3434.489 kb on - strand, within MPMX20_03264 at 3434.530 kb on - strand, within MPMX20_03264 at 3434.612 kb on + strand, within MPMX20_03264 at 3434.810 kb on + strand, within MPMX20_03264 at 3435.050 kb on - strand, within MPMX20_03264 at 3435.063 kb on - strand, within MPMX20_03264 at 3435.093 kb on - strand, within MPMX20_03264 at 3435.125 kb on + strand, within MPMX20_03264 at 3435.133 kb on - strand, within MPMX20_03264 at 3435.133 kb on - strand, within MPMX20_03264 at 3435.224 kb on + strand, within MPMX20_03264 at 3435.233 kb on + strand, within MPMX20_03264 at 3435.266 kb on + strand at 3435.300 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.305 kb on + strand at 3435.308 kb on - strand at 3435.308 kb on - strand at 3435.308 kb on - strand at 3435.313 kb on - strand at 3435.313 kb on - strand at 3435.313 kb on - strand at 3435.313 kb on - strand at 3435.350 kb on + strand at 3435.358 kb on - strand at 3435.368 kb on - strand at 3435.376 kb on + strand at 3435.395 kb on + strand at 3435.413 kb on - strand at 3435.437 kb on - strand at 3435.479 kb on - strand at 3435.541 kb on + strand, within MPMX20_03265 at 3435.579 kb on - strand, within MPMX20_03265 at 3435.589 kb on - strand, within MPMX20_03265 at 3435.627 kb on + strand, within MPMX20_03265 at 3435.799 kb on - strand, within MPMX20_03265 at 3435.799 kb on - strand, within MPMX20_03265 at 3435.809 kb on - strand, within MPMX20_03265 at 3435.833 kb on + strand, within MPMX20_03265 at 3435.833 kb on + strand, within MPMX20_03265 at 3435.833 kb on + strand, within MPMX20_03265 at 3435.906 kb on + strand, within MPMX20_03265 at 3436.048 kb on + strand, within MPMX20_03265 at 3436.049 kb on + strand, within MPMX20_03265 at 3436.076 kb on - strand, within MPMX20_03265 at 3436.109 kb on + strand, within MPMX20_03265 at 3436.158 kb on + strand, within MPMX20_03265 at 3436.158 kb on + strand, within MPMX20_03265 at 3436.171 kb on + strand, within MPMX20_03265 at 3436.245 kb on - strand, within MPMX20_03265 at 3436.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,433,287 - MPMX20_03262 0.79 -0.4 3,433,287 - MPMX20_03262 0.79 +0.5 3,433,516 + +0.1 3,433,526 + -1.9 3,433,526 + -1.5 3,433,527 + -1.5 3,433,534 - -1.6 3,433,534 - -0.7 3,433,535 - +1.9 3,433,551 + MPMX20_03263 0.11 -0.3 3,433,569 + MPMX20_03263 0.13 -0.7 3,433,582 + MPMX20_03263 0.15 -1.2 3,433,639 + MPMX20_03263 0.22 -0.2 3,433,667 + MPMX20_03263 0.25 -0.4 3,433,668 + MPMX20_03263 0.25 +0.4 3,433,787 + MPMX20_03263 0.40 +0.5 3,433,961 + MPMX20_03263 0.61 -1.4 3,434,004 + MPMX20_03263 0.66 -0.5 3,434,016 + MPMX20_03263 0.68 +0.0 3,434,024 - MPMX20_03263 0.68 -0.3 3,434,024 - MPMX20_03263 0.68 -0.1 3,434,024 - MPMX20_03263 0.68 +1.3 3,434,046 - MPMX20_03263 0.71 -0.8 3,434,059 + MPMX20_03263 0.73 +0.2 3,434,122 - MPMX20_03263 0.80 +0.2 3,434,133 - MPMX20_03263 0.82 +0.4 3,434,148 + MPMX20_03263 0.84 -2.1 3,434,156 - MPMX20_03263 0.84 -2.0 3,434,210 - +0.2 3,434,253 - -0.3 3,434,474 + MPMX20_03264 0.17 +0.5 3,434,489 - MPMX20_03264 0.19 +0.4 3,434,530 - MPMX20_03264 0.22 -2.6 3,434,612 + MPMX20_03264 0.30 -2.3 3,434,810 + MPMX20_03264 0.48 -1.1 3,435,050 - MPMX20_03264 0.70 +2.7 3,435,063 - MPMX20_03264 0.72 -3.2 3,435,093 - MPMX20_03264 0.74 -0.9 3,435,125 + MPMX20_03264 0.77 -0.8 3,435,133 - MPMX20_03264 0.78 -2.5 3,435,133 - MPMX20_03264 0.78 -0.3 3,435,224 + MPMX20_03264 0.86 -1.3 3,435,233 + MPMX20_03264 0.87 -1.5 3,435,266 + -0.1 3,435,300 + +0.9 3,435,305 + -2.2 3,435,305 + -1.3 3,435,305 + -2.1 3,435,305 + +2.9 3,435,305 + -0.2 3,435,308 - +0.9 3,435,308 - -1.7 3,435,308 - -1.6 3,435,313 - -2.8 3,435,313 - -3.7 3,435,313 - -0.3 3,435,313 - -2.2 3,435,350 + -1.2 3,435,358 - -1.1 3,435,368 - -2.8 3,435,376 + +3.9 3,435,395 + -0.5 3,435,413 - -0.1 3,435,437 - +1.0 3,435,479 - +0.4 3,435,541 + MPMX20_03265 0.12 +1.9 3,435,579 - MPMX20_03265 0.16 -1.9 3,435,589 - MPMX20_03265 0.17 -0.8 3,435,627 + MPMX20_03265 0.21 -0.2 3,435,799 - MPMX20_03265 0.39 +0.7 3,435,799 - MPMX20_03265 0.39 -1.0 3,435,809 - MPMX20_03265 0.40 +0.0 3,435,833 + MPMX20_03265 0.43 -1.6 3,435,833 + MPMX20_03265 0.43 -0.3 3,435,833 + MPMX20_03265 0.43 +1.0 3,435,906 + MPMX20_03265 0.51 +0.8 3,436,048 + MPMX20_03265 0.66 -0.6 3,436,049 + MPMX20_03265 0.66 -2.0 3,436,076 - MPMX20_03265 0.69 +0.3 3,436,109 + MPMX20_03265 0.73 -1.1 3,436,158 + MPMX20_03265 0.78 -0.6 3,436,158 + MPMX20_03265 0.78 -1.0 3,436,171 + MPMX20_03265 0.79 -0.6 3,436,245 - MPMX20_03265 0.87 -0.1 3,436,313 + +1.1
Or see this region's nucleotide sequence