Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03161 and MPMX20_03162 are separated by 305 nucleotides MPMX20_03162 and MPMX20_03163 are separated by 46 nucleotides MPMX20_03163 and MPMX20_03164 are separated by 93 nucleotides
MPMX20_03161: MPMX20_03161 - hypothetical protein, at 3,320,836 to 3,321,165
_03161
MPMX20_03162: MPMX20_03162 - hypothetical protein, at 3,321,471 to 3,321,689
_03162
MPMX20_03163: MPMX20_03163 - hypothetical protein, at 3,321,736 to 3,321,846
_03163
MPMX20_03164: MPMX20_03164 - hypothetical protein, at 3,321,940 to 3,322,899
_03164
Position (kb)
3321
3322 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3320.752 kb on + strand at 3320.752 kb on + strand at 3320.754 kb on - strand at 3320.760 kb on - strand at 3320.782 kb on + strand at 3320.790 kb on - strand at 3320.792 kb on - strand at 3320.792 kb on - strand at 3320.808 kb on + strand at 3320.822 kb on + strand at 3320.822 kb on + strand at 3320.822 kb on + strand at 3320.822 kb on + strand at 3320.830 kb on - strand at 3320.830 kb on - strand at 3320.831 kb on - strand at 3320.831 kb on - strand at 3320.833 kb on + strand at 3320.856 kb on - strand at 3320.857 kb on + strand at 3320.857 kb on + strand at 3320.931 kb on - strand, within MPMX20_03161 at 3320.931 kb on - strand, within MPMX20_03161 at 3320.937 kb on - strand, within MPMX20_03161 at 3320.937 kb on - strand, within MPMX20_03161 at 3320.942 kb on - strand, within MPMX20_03161 at 3320.950 kb on - strand, within MPMX20_03161 at 3320.952 kb on + strand, within MPMX20_03161 at 3320.961 kb on - strand, within MPMX20_03161 at 3321.061 kb on + strand, within MPMX20_03161 at 3321.069 kb on - strand, within MPMX20_03161 at 3321.069 kb on - strand, within MPMX20_03161 at 3321.088 kb on + strand, within MPMX20_03161 at 3321.106 kb on - strand, within MPMX20_03161 at 3321.111 kb on + strand, within MPMX20_03161 at 3321.132 kb on + strand, within MPMX20_03161 at 3321.137 kb on + strand at 3321.143 kb on + strand at 3321.145 kb on - strand at 3321.145 kb on - strand at 3321.151 kb on - strand at 3321.151 kb on - strand at 3321.151 kb on - strand at 3321.152 kb on + strand at 3321.160 kb on - strand at 3321.166 kb on + strand at 3321.174 kb on - strand at 3321.174 kb on - strand at 3321.174 kb on - strand at 3321.201 kb on + strand at 3321.234 kb on + strand at 3321.234 kb on + strand at 3321.243 kb on + strand at 3321.243 kb on + strand at 3321.243 kb on + strand at 3321.243 kb on + strand at 3321.251 kb on - strand at 3321.251 kb on - strand at 3321.253 kb on + strand at 3321.259 kb on + strand at 3321.259 kb on + strand at 3321.259 kb on + strand at 3321.265 kb on + strand at 3321.265 kb on + strand at 3321.265 kb on + strand at 3321.266 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.267 kb on - strand at 3321.268 kb on - strand at 3321.268 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.273 kb on - strand at 3321.278 kb on + strand at 3321.278 kb on - strand at 3321.285 kb on + strand at 3321.285 kb on + strand at 3321.320 kb on + strand at 3321.325 kb on + strand at 3321.381 kb on + strand at 3321.381 kb on - strand at 3321.424 kb on + strand at 3321.460 kb on + strand at 3321.468 kb on - strand at 3321.468 kb on - strand at 3321.481 kb on + strand at 3321.514 kb on - strand, within MPMX20_03162 at 3321.515 kb on - strand, within MPMX20_03162 at 3321.515 kb on - strand, within MPMX20_03162 at 3321.517 kb on + strand, within MPMX20_03162 at 3321.531 kb on - strand, within MPMX20_03162 at 3321.549 kb on - strand, within MPMX20_03162 at 3321.615 kb on + strand, within MPMX20_03162 at 3321.615 kb on + strand, within MPMX20_03162 at 3321.620 kb on + strand, within MPMX20_03162 at 3321.620 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.627 kb on + strand, within MPMX20_03162 at 3321.628 kb on - strand, within MPMX20_03162 at 3321.628 kb on - strand, within MPMX20_03162 at 3321.628 kb on - strand, within MPMX20_03162 at 3321.630 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.635 kb on - strand, within MPMX20_03162 at 3321.678 kb on - strand at 3321.715 kb on + strand at 3321.753 kb on - strand, within MPMX20_03163 at 3321.753 kb on - strand, within MPMX20_03163 at 3321.862 kb on - strand at 3321.951 kb on - strand at 3322.004 kb on + strand at 3322.009 kb on + strand at 3322.010 kb on - strand at 3322.104 kb on + strand, within MPMX20_03164 at 3322.109 kb on + strand, within MPMX20_03164 at 3322.173 kb on + strand, within MPMX20_03164 at 3322.191 kb on - strand, within MPMX20_03164 at 3322.213 kb on + strand, within MPMX20_03164 at 3322.213 kb on + strand, within MPMX20_03164 at 3322.221 kb on - strand, within MPMX20_03164 at 3322.238 kb on - strand, within MPMX20_03164 at 3322.245 kb on + strand, within MPMX20_03164 at 3322.248 kb on - strand, within MPMX20_03164 at 3322.248 kb on - strand, within MPMX20_03164 at 3322.253 kb on - strand, within MPMX20_03164 at 3322.253 kb on - strand, within MPMX20_03164 at 3322.253 kb on - strand, within MPMX20_03164 at 3322.294 kb on + strand, within MPMX20_03164 at 3322.320 kb on + strand, within MPMX20_03164 at 3322.326 kb on + strand, within MPMX20_03164 at 3322.328 kb on - strand, within MPMX20_03164 at 3322.369 kb on - strand, within MPMX20_03164 at 3322.374 kb on - strand, within MPMX20_03164 at 3322.376 kb on + strand, within MPMX20_03164 at 3322.406 kb on - strand, within MPMX20_03164 at 3322.469 kb on - strand, within MPMX20_03164 at 3322.481 kb on + strand, within MPMX20_03164 at 3322.495 kb on + strand, within MPMX20_03164 at 3322.500 kb on + strand, within MPMX20_03164 at 3322.500 kb on + strand, within MPMX20_03164 at 3322.503 kb on - strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.505 kb on + strand, within MPMX20_03164 at 3322.513 kb on - strand, within MPMX20_03164 at 3322.550 kb on + strand, within MPMX20_03164 at 3322.579 kb on + strand, within MPMX20_03164 at 3322.598 kb on + strand, within MPMX20_03164 at 3322.604 kb on + strand, within MPMX20_03164 at 3322.624 kb on + strand, within MPMX20_03164 at 3322.633 kb on + strand, within MPMX20_03164 at 3322.643 kb on + strand, within MPMX20_03164 at 3322.643 kb on + strand, within MPMX20_03164 at 3322.643 kb on + strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.651 kb on - strand, within MPMX20_03164 at 3322.658 kb on + strand, within MPMX20_03164 at 3322.683 kb on - strand, within MPMX20_03164 at 3322.686 kb on + strand, within MPMX20_03164 at 3322.686 kb on + strand, within MPMX20_03164 at 3322.686 kb on + strand, within MPMX20_03164 at 3322.702 kb on + strand, within MPMX20_03164 at 3322.702 kb on + strand, within MPMX20_03164 at 3322.716 kb on + strand, within MPMX20_03164 at 3322.717 kb on - strand, within MPMX20_03164 at 3322.731 kb on + strand, within MPMX20_03164 at 3322.731 kb on + strand, within MPMX20_03164 at 3322.732 kb on + strand, within MPMX20_03164 at 3322.739 kb on - strand, within MPMX20_03164 at 3322.740 kb on - strand, within MPMX20_03164 at 3322.746 kb on + strand, within MPMX20_03164 at 3322.753 kb on - strand, within MPMX20_03164 at 3322.754 kb on + strand, within MPMX20_03164 at 3322.759 kb on + strand, within MPMX20_03164 at 3322.768 kb on - strand, within MPMX20_03164 at 3322.837 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,320,752 + -1.4 3,320,752 + -1.4 3,320,754 - +0.7 3,320,760 - -0.5 3,320,782 + -0.4 3,320,790 - -1.9 3,320,792 - -1.0 3,320,792 - -0.6 3,320,808 + -1.8 3,320,822 + +0.1 3,320,822 + -0.7 3,320,822 + +1.5 3,320,822 + +0.9 3,320,830 - +0.4 3,320,830 - -0.4 3,320,831 - -0.1 3,320,831 - -1.8 3,320,833 + -0.8 3,320,856 - -2.0 3,320,857 + +0.7 3,320,857 + +0.6 3,320,931 - MPMX20_03161 0.29 +0.5 3,320,931 - MPMX20_03161 0.29 -2.4 3,320,937 - MPMX20_03161 0.31 -0.3 3,320,937 - MPMX20_03161 0.31 -0.4 3,320,942 - MPMX20_03161 0.32 +0.2 3,320,950 - MPMX20_03161 0.35 +0.5 3,320,952 + MPMX20_03161 0.35 -2.2 3,320,961 - MPMX20_03161 0.38 -0.6 3,321,061 + MPMX20_03161 0.68 -0.5 3,321,069 - MPMX20_03161 0.71 -0.9 3,321,069 - MPMX20_03161 0.71 +0.2 3,321,088 + MPMX20_03161 0.76 +0.9 3,321,106 - MPMX20_03161 0.82 -0.3 3,321,111 + MPMX20_03161 0.83 -0.8 3,321,132 + MPMX20_03161 0.90 -0.4 3,321,137 + +0.0 3,321,143 + -0.6 3,321,145 - +0.1 3,321,145 - +0.2 3,321,151 - +0.7 3,321,151 - -0.3 3,321,151 - -1.3 3,321,152 + -0.7 3,321,160 - +0.2 3,321,166 + +0.8 3,321,174 - -0.6 3,321,174 - -0.1 3,321,174 - -0.9 3,321,201 + -0.5 3,321,234 + -1.4 3,321,234 + -0.8 3,321,243 + +0.2 3,321,243 + -1.5 3,321,243 + -2.6 3,321,243 + +0.0 3,321,251 - +0.9 3,321,251 - +0.7 3,321,253 + +1.2 3,321,259 + -1.5 3,321,259 + +1.4 3,321,259 + +0.1 3,321,265 + -1.4 3,321,265 + -0.2 3,321,265 + +0.5 3,321,266 - -0.5 3,321,267 - -0.1 3,321,267 - -1.0 3,321,267 - -0.6 3,321,267 - +1.9 3,321,267 - +1.2 3,321,268 - +0.8 3,321,268 - +0.5 3,321,273 - +2.9 3,321,273 - +0.5 3,321,273 - -1.8 3,321,273 - +0.9 3,321,273 - -2.4 3,321,273 - +0.5 3,321,278 + -0.8 3,321,278 - -0.2 3,321,285 + -1.4 3,321,285 + -0.0 3,321,320 + -0.2 3,321,325 + +0.5 3,321,381 + +0.9 3,321,381 - +0.8 3,321,424 + -2.2 3,321,460 + -0.5 3,321,468 - -0.2 3,321,468 - -0.8 3,321,481 + -0.8 3,321,514 - MPMX20_03162 0.20 -1.6 3,321,515 - MPMX20_03162 0.20 -1.0 3,321,515 - MPMX20_03162 0.20 +0.2 3,321,517 + MPMX20_03162 0.21 -0.6 3,321,531 - MPMX20_03162 0.27 -0.5 3,321,549 - MPMX20_03162 0.36 +0.2 3,321,615 + MPMX20_03162 0.66 -2.1 3,321,615 + MPMX20_03162 0.66 +0.1 3,321,620 + MPMX20_03162 0.68 -1.8 3,321,620 + MPMX20_03162 0.68 +0.3 3,321,627 + MPMX20_03162 0.71 -1.3 3,321,627 + MPMX20_03162 0.71 +1.6 3,321,627 + MPMX20_03162 0.71 -0.5 3,321,627 + MPMX20_03162 0.71 +1.0 3,321,627 + MPMX20_03162 0.71 -0.1 3,321,627 + MPMX20_03162 0.71 -0.5 3,321,627 + MPMX20_03162 0.71 -1.4 3,321,627 + MPMX20_03162 0.71 +0.3 3,321,627 + MPMX20_03162 0.71 -0.4 3,321,627 + MPMX20_03162 0.71 -1.4 3,321,627 + MPMX20_03162 0.71 +0.2 3,321,628 - MPMX20_03162 0.72 -0.2 3,321,628 - MPMX20_03162 0.72 -0.0 3,321,628 - MPMX20_03162 0.72 -0.9 3,321,630 - MPMX20_03162 0.73 -1.3 3,321,635 - MPMX20_03162 0.75 +0.2 3,321,635 - MPMX20_03162 0.75 +0.3 3,321,635 - MPMX20_03162 0.75 +0.1 3,321,635 - MPMX20_03162 0.75 -0.7 3,321,635 - MPMX20_03162 0.75 -0.7 3,321,635 - MPMX20_03162 0.75 -0.4 3,321,678 - +0.7 3,321,715 + +3.2 3,321,753 - MPMX20_03163 0.15 -2.0 3,321,753 - MPMX20_03163 0.15 -0.9 3,321,862 - -0.5 3,321,951 - -0.1 3,322,004 + +0.6 3,322,009 + -0.5 3,322,010 - +0.0 3,322,104 + MPMX20_03164 0.17 -1.0 3,322,109 + MPMX20_03164 0.18 -1.6 3,322,173 + MPMX20_03164 0.24 -0.9 3,322,191 - MPMX20_03164 0.26 -0.1 3,322,213 + MPMX20_03164 0.28 +1.4 3,322,213 + MPMX20_03164 0.28 -1.3 3,322,221 - MPMX20_03164 0.29 -0.1 3,322,238 - MPMX20_03164 0.31 -0.0 3,322,245 + MPMX20_03164 0.32 -0.2 3,322,248 - MPMX20_03164 0.32 +0.2 3,322,248 - MPMX20_03164 0.32 -0.1 3,322,253 - MPMX20_03164 0.33 -0.4 3,322,253 - MPMX20_03164 0.33 +0.2 3,322,253 - MPMX20_03164 0.33 +0.6 3,322,294 + MPMX20_03164 0.37 -3.5 3,322,320 + MPMX20_03164 0.40 +0.6 3,322,326 + MPMX20_03164 0.40 +0.4 3,322,328 - MPMX20_03164 0.40 +1.1 3,322,369 - MPMX20_03164 0.45 -1.0 3,322,374 - MPMX20_03164 0.45 +1.9 3,322,376 + MPMX20_03164 0.45 -0.2 3,322,406 - MPMX20_03164 0.49 +0.9 3,322,469 - MPMX20_03164 0.55 -1.3 3,322,481 + MPMX20_03164 0.56 -0.6 3,322,495 + MPMX20_03164 0.58 +0.1 3,322,500 + MPMX20_03164 0.58 -1.9 3,322,500 + MPMX20_03164 0.58 -0.6 3,322,503 - MPMX20_03164 0.59 +0.4 3,322,505 + MPMX20_03164 0.59 +2.4 3,322,505 + MPMX20_03164 0.59 +0.3 3,322,505 + MPMX20_03164 0.59 -1.9 3,322,505 + MPMX20_03164 0.59 +0.3 3,322,513 - MPMX20_03164 0.60 -0.3 3,322,550 + MPMX20_03164 0.64 -0.4 3,322,579 + MPMX20_03164 0.67 -1.0 3,322,598 + MPMX20_03164 0.69 -0.6 3,322,604 + MPMX20_03164 0.69 -0.6 3,322,624 + MPMX20_03164 0.71 +0.8 3,322,633 + MPMX20_03164 0.72 -1.5 3,322,643 + MPMX20_03164 0.73 +0.5 3,322,643 + MPMX20_03164 0.73 +2.9 3,322,643 + MPMX20_03164 0.73 -0.4 3,322,651 - MPMX20_03164 0.74 +1.4 3,322,651 - MPMX20_03164 0.74 +0.9 3,322,651 - MPMX20_03164 0.74 -1.0 3,322,651 - MPMX20_03164 0.74 +1.4 3,322,658 + MPMX20_03164 0.75 -0.5 3,322,683 - MPMX20_03164 0.77 -0.0 3,322,686 + MPMX20_03164 0.78 +0.1 3,322,686 + MPMX20_03164 0.78 +2.9 3,322,686 + MPMX20_03164 0.78 -0.1 3,322,702 + MPMX20_03164 0.79 +1.0 3,322,702 + MPMX20_03164 0.79 +1.6 3,322,716 + MPMX20_03164 0.81 -0.4 3,322,717 - MPMX20_03164 0.81 -0.6 3,322,731 + MPMX20_03164 0.82 -1.1 3,322,731 + MPMX20_03164 0.82 +0.9 3,322,732 + MPMX20_03164 0.82 -0.4 3,322,739 - MPMX20_03164 0.83 +0.1 3,322,740 - MPMX20_03164 0.83 -0.1 3,322,746 + MPMX20_03164 0.84 +0.7 3,322,753 - MPMX20_03164 0.85 -0.3 3,322,754 + MPMX20_03164 0.85 -1.3 3,322,759 + MPMX20_03164 0.85 -0.3 3,322,768 - MPMX20_03164 0.86 -0.8 3,322,837 + -0.1
Or see this region's nucleotide sequence