Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03094 and MPMX20_03095 are separated by 69 nucleotides MPMX20_03095 and MPMX20_03096 overlap by 26 nucleotides MPMX20_03096 and MPMX20_03097 overlap by 17 nucleotides
MPMX20_03094: MPMX20_03094 - HTH-type transcriptional regulator MlrA, at 3,247,503 to 3,248,243
_03094
MPMX20_03095: MPMX20_03095 - hypothetical protein, at 3,248,313 to 3,248,426
_03095
MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138
_03096
MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072
_03097
Position (kb)
3248
3249 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3247.315 kb on + strand at 3247.386 kb on - strand at 3247.483 kb on + strand at 3247.491 kb on - strand at 3247.543 kb on - strand at 3247.579 kb on + strand, within MPMX20_03094 at 3247.611 kb on - strand, within MPMX20_03094 at 3247.681 kb on - strand, within MPMX20_03094 at 3247.810 kb on + strand, within MPMX20_03094 at 3247.884 kb on - strand, within MPMX20_03094 at 3247.925 kb on + strand, within MPMX20_03094 at 3248.016 kb on - strand, within MPMX20_03094 at 3248.085 kb on + strand, within MPMX20_03094 at 3248.186 kb on - strand at 3248.204 kb on + strand at 3248.254 kb on - strand at 3248.268 kb on - strand at 3248.278 kb on + strand at 3248.286 kb on - strand at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.385 kb on - strand, within MPMX20_03095 at 3248.654 kb on + strand, within MPMX20_03096 at 3248.681 kb on + strand, within MPMX20_03096 at 3248.697 kb on - strand, within MPMX20_03096 at 3248.724 kb on + strand, within MPMX20_03096 at 3248.916 kb on - strand, within MPMX20_03096 at 3248.936 kb on - strand, within MPMX20_03096 at 3249.107 kb on + strand at 3249.115 kb on - strand at 3249.139 kb on - strand at 3249.146 kb on - strand at 3249.183 kb on - strand at 3249.263 kb on + strand, within MPMX20_03097 at 3249.332 kb on - strand, within MPMX20_03097 at 3249.409 kb on - strand, within MPMX20_03097
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,247,315 + -1.2 3,247,386 - +2.5 3,247,483 + -0.8 3,247,491 - -0.1 3,247,543 - -1.1 3,247,579 + MPMX20_03094 0.10 +2.0 3,247,611 - MPMX20_03094 0.15 +1.0 3,247,681 - MPMX20_03094 0.24 -0.0 3,247,810 + MPMX20_03094 0.41 -0.0 3,247,884 - MPMX20_03094 0.51 +0.5 3,247,925 + MPMX20_03094 0.57 -0.4 3,248,016 - MPMX20_03094 0.69 -0.5 3,248,085 + MPMX20_03094 0.79 -2.6 3,248,186 - +0.1 3,248,204 + -0.0 3,248,254 - -0.2 3,248,268 - -0.8 3,248,278 + -1.0 3,248,286 - -3.4 3,248,385 - MPMX20_03095 0.63 -1.2 3,248,385 - MPMX20_03095 0.63 -0.4 3,248,385 - MPMX20_03095 0.63 -2.9 3,248,654 + MPMX20_03096 0.34 +0.6 3,248,681 + MPMX20_03096 0.38 -0.1 3,248,697 - MPMX20_03096 0.40 +0.2 3,248,724 + MPMX20_03096 0.44 -0.3 3,248,916 - MPMX20_03096 0.70 +1.0 3,248,936 - MPMX20_03096 0.72 +1.7 3,249,107 + -0.2 3,249,115 - +1.0 3,249,139 - +0.8 3,249,146 - -0.6 3,249,183 - -0.5 3,249,263 + MPMX20_03097 0.15 -1.3 3,249,332 - MPMX20_03097 0.22 -0.4 3,249,409 - MPMX20_03097 0.30 -0.7
Or see this region's nucleotide sequence