Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03089 and MPMX20_03090 are separated by 137 nucleotides MPMX20_03090 and MPMX20_03091 are separated by 64 nucleotides MPMX20_03091 and MPMX20_03092 are separated by 51 nucleotides
MPMX20_03089: MPMX20_03089 - Iron-sulfur cluster carrier protein, at 3,241,020 to 3,242,129
_03089
MPMX20_03090: MPMX20_03090 - Methionine--tRNA ligase, at 3,242,267 to 3,244,300
_03090
MPMX20_03091: MPMX20_03091 - hypothetical protein, at 3,244,365 to 3,244,835
_03091
MPMX20_03092: MPMX20_03092 - Transcriptional regulatory protein BtsR, at 3,244,887 to 3,245,606
_03092
Position (kb)
3242
3243
3244
3245 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3241.306 kb on + strand, within MPMX20_03089 at 3241.314 kb on - strand, within MPMX20_03089 at 3241.377 kb on + strand, within MPMX20_03089 at 3241.387 kb on - strand, within MPMX20_03089 at 3241.442 kb on + strand, within MPMX20_03089 at 3241.443 kb on - strand, within MPMX20_03089 at 3241.474 kb on + strand, within MPMX20_03089 at 3241.477 kb on - strand, within MPMX20_03089 at 3241.517 kb on - strand, within MPMX20_03089 at 3241.543 kb on + strand, within MPMX20_03089 at 3241.551 kb on - strand, within MPMX20_03089 at 3241.679 kb on - strand, within MPMX20_03089 at 3241.755 kb on - strand, within MPMX20_03089 at 3241.775 kb on + strand, within MPMX20_03089 at 3241.782 kb on - strand, within MPMX20_03089 at 3241.788 kb on - strand, within MPMX20_03089 at 3241.788 kb on - strand, within MPMX20_03089 at 3241.806 kb on - strand, within MPMX20_03089 at 3241.816 kb on + strand, within MPMX20_03089 at 3241.816 kb on + strand, within MPMX20_03089 at 3241.826 kb on - strand, within MPMX20_03089 at 3241.833 kb on - strand, within MPMX20_03089 at 3241.843 kb on + strand, within MPMX20_03089 at 3241.851 kb on - strand, within MPMX20_03089 at 3241.851 kb on - strand, within MPMX20_03089 at 3241.852 kb on - strand, within MPMX20_03089 at 3241.897 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.910 kb on + strand, within MPMX20_03089 at 3241.923 kb on - strand, within MPMX20_03089 at 3241.985 kb on + strand, within MPMX20_03089 at 3242.010 kb on + strand, within MPMX20_03089 at 3242.010 kb on + strand, within MPMX20_03089 at 3242.010 kb on + strand, within MPMX20_03089 at 3242.018 kb on - strand, within MPMX20_03089 at 3242.037 kb on + strand at 3242.037 kb on - strand at 3242.040 kb on - strand at 3242.045 kb on + strand at 3242.067 kb on - strand at 3242.077 kb on - strand at 3242.096 kb on - strand at 3242.125 kb on - strand at 3242.145 kb on - strand at 3242.158 kb on - strand at 3242.166 kb on - strand at 3242.190 kb on + strand at 3243.932 kb on + strand, within MPMX20_03090 at 3244.088 kb on + strand, within MPMX20_03090 at 3244.260 kb on + strand at 3244.338 kb on + strand at 3244.353 kb on + strand at 3244.358 kb on + strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.361 kb on - strand at 3244.391 kb on + strand at 3244.472 kb on - strand, within MPMX20_03091 at 3244.508 kb on - strand, within MPMX20_03091 at 3244.559 kb on + strand, within MPMX20_03091 at 3244.578 kb on - strand, within MPMX20_03091 at 3244.667 kb on + strand, within MPMX20_03091 at 3244.667 kb on + strand, within MPMX20_03091 at 3244.681 kb on - strand, within MPMX20_03091 at 3244.730 kb on + strand, within MPMX20_03091 at 3244.737 kb on + strand, within MPMX20_03091 at 3244.798 kb on + strand at 3244.798 kb on + strand at 3244.806 kb on - strand at 3244.806 kb on - strand at 3245.048 kb on + strand, within MPMX20_03092 at 3245.102 kb on - strand, within MPMX20_03092 at 3245.107 kb on - strand, within MPMX20_03092 at 3245.167 kb on + strand, within MPMX20_03092 at 3245.188 kb on + strand, within MPMX20_03092 at 3245.191 kb on - strand, within MPMX20_03092 at 3245.195 kb on + strand, within MPMX20_03092 at 3245.196 kb on - strand, within MPMX20_03092 at 3245.246 kb on - strand, within MPMX20_03092 at 3245.287 kb on - strand, within MPMX20_03092
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,241,306 + MPMX20_03089 0.26 -0.5 3,241,314 - MPMX20_03089 0.26 +1.6 3,241,377 + MPMX20_03089 0.32 -0.6 3,241,387 - MPMX20_03089 0.33 -0.0 3,241,442 + MPMX20_03089 0.38 -3.0 3,241,443 - MPMX20_03089 0.38 -1.6 3,241,474 + MPMX20_03089 0.41 -1.6 3,241,477 - MPMX20_03089 0.41 +0.1 3,241,517 - MPMX20_03089 0.45 +0.3 3,241,543 + MPMX20_03089 0.47 +0.9 3,241,551 - MPMX20_03089 0.48 -0.4 3,241,679 - MPMX20_03089 0.59 +0.2 3,241,755 - MPMX20_03089 0.66 -0.0 3,241,775 + MPMX20_03089 0.68 +1.3 3,241,782 - MPMX20_03089 0.69 -0.2 3,241,788 - MPMX20_03089 0.69 -0.3 3,241,788 - MPMX20_03089 0.69 -0.3 3,241,806 - MPMX20_03089 0.71 -2.3 3,241,816 + MPMX20_03089 0.72 +0.0 3,241,816 + MPMX20_03089 0.72 -0.1 3,241,826 - MPMX20_03089 0.73 +0.2 3,241,833 - MPMX20_03089 0.73 -0.7 3,241,843 + MPMX20_03089 0.74 +0.5 3,241,851 - MPMX20_03089 0.75 -0.6 3,241,851 - MPMX20_03089 0.75 -0.1 3,241,852 - MPMX20_03089 0.75 +0.0 3,241,897 + MPMX20_03089 0.79 +0.0 3,241,910 + MPMX20_03089 0.80 +0.5 3,241,910 + MPMX20_03089 0.80 +0.7 3,241,910 + MPMX20_03089 0.80 -1.3 3,241,910 + MPMX20_03089 0.80 -0.3 3,241,923 - MPMX20_03089 0.81 -0.4 3,241,985 + MPMX20_03089 0.87 -1.1 3,242,010 + MPMX20_03089 0.89 +0.1 3,242,010 + MPMX20_03089 0.89 -1.4 3,242,010 + MPMX20_03089 0.89 -1.5 3,242,018 - MPMX20_03089 0.90 -0.9 3,242,037 + -0.2 3,242,037 - -1.1 3,242,040 - -0.6 3,242,045 + -1.4 3,242,067 - +1.9 3,242,077 - +0.6 3,242,096 - -3.3 3,242,125 - -0.0 3,242,145 - -0.4 3,242,158 - -0.6 3,242,166 - +0.2 3,242,190 + +0.4 3,243,932 + MPMX20_03090 0.82 -1.2 3,244,088 + MPMX20_03090 0.90 -1.8 3,244,260 + -1.4 3,244,338 + +1.2 3,244,353 + -0.5 3,244,358 + -0.2 3,244,361 - -0.0 3,244,361 - -0.4 3,244,361 - -2.4 3,244,361 - -2.5 3,244,391 + -1.0 3,244,472 - MPMX20_03091 0.23 -0.1 3,244,508 - MPMX20_03091 0.30 -0.5 3,244,559 + MPMX20_03091 0.41 -0.1 3,244,578 - MPMX20_03091 0.45 -4.2 3,244,667 + MPMX20_03091 0.64 -0.1 3,244,667 + MPMX20_03091 0.64 -0.9 3,244,681 - MPMX20_03091 0.67 +0.9 3,244,730 + MPMX20_03091 0.77 +0.5 3,244,737 + MPMX20_03091 0.79 -2.2 3,244,798 + -0.9 3,244,798 + -0.2 3,244,806 - +1.0 3,244,806 - -1.1 3,245,048 + MPMX20_03092 0.22 -1.4 3,245,102 - MPMX20_03092 0.30 -0.4 3,245,107 - MPMX20_03092 0.31 -1.5 3,245,167 + MPMX20_03092 0.39 -1.3 3,245,188 + MPMX20_03092 0.42 -1.2 3,245,191 - MPMX20_03092 0.42 -0.5 3,245,195 + MPMX20_03092 0.43 -0.5 3,245,196 - MPMX20_03092 0.43 -0.1 3,245,246 - MPMX20_03092 0.50 -0.7 3,245,287 - MPMX20_03092 0.56 +0.4
Or see this region's nucleotide sequence