Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02917 and MPMX20_02918 are separated by 163 nucleotides MPMX20_02918 and MPMX20_02919 overlap by 1 nucleotides MPMX20_02919 and MPMX20_02920 are separated by 70 nucleotides
MPMX20_02917: MPMX20_02917 - hypothetical protein, at 3,055,301 to 3,055,450
_02917
MPMX20_02918: MPMX20_02918 - hypothetical protein, at 3,055,614 to 3,055,742
_02918
MPMX20_02919: MPMX20_02919 - hypothetical protein, at 3,055,742 to 3,055,939
_02919
MPMX20_02920: MPMX20_02920 - hypothetical protein, at 3,056,010 to 3,056,981
_02920
Position (kb)
3055
3056 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3054.749 kb on + strand at 3054.762 kb on - strand at 3054.779 kb on - strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.796 kb on + strand at 3054.844 kb on - strand at 3054.861 kb on + strand at 3054.881 kb on + strand at 3054.907 kb on - strand at 3054.918 kb on + strand at 3054.918 kb on + strand at 3054.926 kb on - strand at 3054.953 kb on + strand at 3055.005 kb on + strand at 3055.008 kb on - strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.012 kb on + strand at 3055.020 kb on - strand at 3055.020 kb on - strand at 3055.020 kb on - strand at 3055.039 kb on + strand at 3055.054 kb on + strand at 3055.095 kb on + strand at 3055.095 kb on + strand at 3055.102 kb on + strand at 3055.103 kb on - strand at 3055.127 kb on + strand at 3055.161 kb on + strand at 3055.169 kb on - strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.265 kb on + strand at 3055.273 kb on - strand at 3055.273 kb on - strand at 3055.273 kb on - strand at 3055.276 kb on + strand at 3055.398 kb on + strand, within MPMX20_02917 at 3055.398 kb on + strand, within MPMX20_02917 at 3055.399 kb on + strand, within MPMX20_02917 at 3055.416 kb on - strand, within MPMX20_02917 at 3055.437 kb on - strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.445 kb on + strand at 3055.453 kb on - strand at 3055.453 kb on - strand at 3055.453 kb on - strand at 3055.481 kb on - strand at 3055.524 kb on - strand at 3055.542 kb on + strand at 3055.566 kb on + strand at 3055.631 kb on + strand, within MPMX20_02918 at 3055.638 kb on - strand, within MPMX20_02918 at 3055.706 kb on + strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.714 kb on - strand, within MPMX20_02918 at 3055.731 kb on + strand at 3055.732 kb on + strand at 3055.762 kb on + strand, within MPMX20_02919 at 3055.766 kb on - strand, within MPMX20_02919 at 3055.770 kb on - strand, within MPMX20_02919 at 3055.770 kb on - strand, within MPMX20_02919 at 3055.780 kb on + strand, within MPMX20_02919 at 3055.780 kb on + strand, within MPMX20_02919 at 3055.814 kb on + strand, within MPMX20_02919 at 3055.853 kb on + strand, within MPMX20_02919 at 3055.856 kb on - strand, within MPMX20_02919 at 3055.868 kb on + strand, within MPMX20_02919 at 3055.868 kb on + strand, within MPMX20_02919 at 3055.876 kb on - strand, within MPMX20_02919 at 3055.881 kb on - strand, within MPMX20_02919 at 3055.933 kb on + strand at 3055.933 kb on + strand at 3055.933 kb on + strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.941 kb on - strand at 3055.945 kb on + strand at 3055.967 kb on - strand at 3056.024 kb on + strand at 3056.047 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.083 kb on + strand at 3056.159 kb on - strand, within MPMX20_02920 at 3056.240 kb on + strand, within MPMX20_02920 at 3056.303 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.438 kb on + strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.446 kb on - strand, within MPMX20_02920 at 3056.487 kb on - strand, within MPMX20_02920 at 3056.499 kb on + strand, within MPMX20_02920 at 3056.522 kb on + strand, within MPMX20_02920 at 3056.530 kb on - strand, within MPMX20_02920 at 3056.695 kb on - strand, within MPMX20_02920 at 3056.860 kb on - strand, within MPMX20_02920 at 3056.901 kb on + strand at 3056.901 kb on + strand at 3056.909 kb on - strand at 3056.926 kb on - strand at 3056.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,054,749 + -1.8 3,054,762 - -0.8 3,054,779 - -0.6 3,054,796 + -0.7 3,054,796 + -0.2 3,054,796 + -0.8 3,054,844 - -0.3 3,054,861 + -1.1 3,054,881 + -0.8 3,054,907 - -0.2 3,054,918 + +0.6 3,054,918 + -1.2 3,054,926 - -0.9 3,054,953 + -1.3 3,055,005 + -1.1 3,055,008 - -0.2 3,055,012 + -0.9 3,055,012 + -0.2 3,055,012 + -0.7 3,055,012 + -1.4 3,055,012 + -0.4 3,055,012 + +2.0 3,055,020 - -1.8 3,055,020 - -1.8 3,055,020 - -0.9 3,055,039 + -0.4 3,055,054 + -1.8 3,055,095 + -0.9 3,055,095 + -0.4 3,055,102 + -1.6 3,055,103 - -0.7 3,055,127 + -0.9 3,055,161 + -0.5 3,055,169 - -1.9 3,055,265 + -0.8 3,055,265 + -0.6 3,055,265 + -1.6 3,055,265 + -1.2 3,055,265 + +0.1 3,055,273 - -0.9 3,055,273 - +1.3 3,055,273 - -2.1 3,055,276 + -1.2 3,055,398 + MPMX20_02917 0.65 -1.1 3,055,398 + MPMX20_02917 0.65 -0.2 3,055,399 + MPMX20_02917 0.65 -0.6 3,055,416 - MPMX20_02917 0.77 -0.3 3,055,437 - -0.8 3,055,445 + -2.0 3,055,445 + -3.5 3,055,445 + -1.1 3,055,445 + -0.7 3,055,453 - -0.7 3,055,453 - -1.3 3,055,453 - -0.3 3,055,481 - -2.6 3,055,524 - -1.1 3,055,542 + -0.8 3,055,566 + -2.4 3,055,631 + MPMX20_02918 0.13 -0.9 3,055,638 - MPMX20_02918 0.19 -0.8 3,055,706 + MPMX20_02918 0.71 -1.7 3,055,714 - MPMX20_02918 0.78 -1.5 3,055,714 - MPMX20_02918 0.78 -1.5 3,055,714 - MPMX20_02918 0.78 -0.5 3,055,714 - MPMX20_02918 0.78 -3.2 3,055,731 + -0.7 3,055,732 + -2.6 3,055,762 + MPMX20_02919 0.10 -1.8 3,055,766 - MPMX20_02919 0.12 -1.3 3,055,770 - MPMX20_02919 0.14 -0.9 3,055,770 - MPMX20_02919 0.14 -1.5 3,055,780 + MPMX20_02919 0.19 -1.0 3,055,780 + MPMX20_02919 0.19 -2.7 3,055,814 + MPMX20_02919 0.36 -1.8 3,055,853 + MPMX20_02919 0.56 -3.2 3,055,856 - MPMX20_02919 0.58 -2.3 3,055,868 + MPMX20_02919 0.64 -1.5 3,055,868 + MPMX20_02919 0.64 -0.9 3,055,876 - MPMX20_02919 0.68 -0.3 3,055,881 - MPMX20_02919 0.70 -0.3 3,055,933 + -1.1 3,055,933 + -1.2 3,055,933 + -0.8 3,055,941 - -0.6 3,055,941 - -2.5 3,055,941 - -0.5 3,055,941 - -1.1 3,055,941 - -1.3 3,055,941 - -0.8 3,055,941 - -3.7 3,055,945 + -1.9 3,055,967 - -1.8 3,056,024 + -2.2 3,056,047 + -1.7 3,056,083 + -2.0 3,056,083 + -1.6 3,056,083 + -0.8 3,056,159 - MPMX20_02920 0.15 -1.1 3,056,240 + MPMX20_02920 0.24 -1.1 3,056,303 + MPMX20_02920 0.30 +2.0 3,056,438 + MPMX20_02920 0.44 -2.1 3,056,438 + MPMX20_02920 0.44 +0.1 3,056,438 + MPMX20_02920 0.44 -2.6 3,056,438 + MPMX20_02920 0.44 -1.6 3,056,438 + MPMX20_02920 0.44 -1.8 3,056,446 - MPMX20_02920 0.45 -2.3 3,056,446 - MPMX20_02920 0.45 -1.8 3,056,446 - MPMX20_02920 0.45 -1.9 3,056,446 - MPMX20_02920 0.45 -0.8 3,056,487 - MPMX20_02920 0.49 -1.2 3,056,499 + MPMX20_02920 0.50 -2.2 3,056,522 + MPMX20_02920 0.53 -1.8 3,056,530 - MPMX20_02920 0.53 -3.5 3,056,695 - MPMX20_02920 0.70 -1.5 3,056,860 - MPMX20_02920 0.87 -0.7 3,056,901 + -1.4 3,056,901 + -1.0 3,056,909 - -1.2 3,056,926 - -1.0 3,056,930 + -0.8
Or see this region's nucleotide sequence