Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02901 and MPMX20_02902 overlap by 8 nucleotides MPMX20_02902 and MPMX20_02903 overlap by 4 nucleotides MPMX20_02903 and MPMX20_02904 overlap by 1 nucleotides MPMX20_02904 and MPMX20_02905 are separated by 186 nucleotides
MPMX20_02901: MPMX20_02901 - hypothetical protein, at 3,046,469 to 3,047,080
_02901
MPMX20_02902: MPMX20_02902 - Serine/threonine-protein phosphatase 1, at 3,047,073 to 3,047,741
_02902
MPMX20_02903: MPMX20_02903 - hypothetical protein, at 3,047,738 to 3,047,908
_02903
MPMX20_02904: MPMX20_02904 - hypothetical protein, at 3,047,908 to 3,048,363
_02904
MPMX20_02905: MPMX20_02905 - hypothetical protein, at 3,048,550 to 3,049,257
_02905
Position (kb)
3047
3048 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3046.768 kb on + strand, within MPMX20_02901 at 3046.776 kb on - strand, within MPMX20_02901 at 3046.785 kb on + strand, within MPMX20_02901 at 3046.862 kb on - strand, within MPMX20_02901 at 3046.881 kb on - strand, within MPMX20_02901 at 3046.881 kb on - strand, within MPMX20_02901 at 3046.918 kb on + strand, within MPMX20_02901 at 3046.938 kb on + strand, within MPMX20_02901 at 3046.938 kb on + strand, within MPMX20_02901 at 3046.938 kb on + strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.946 kb on - strand, within MPMX20_02901 at 3046.975 kb on + strand, within MPMX20_02901 at 3046.983 kb on - strand, within MPMX20_02901 at 3046.987 kb on + strand, within MPMX20_02901 at 3046.993 kb on - strand, within MPMX20_02901 at 3046.995 kb on - strand, within MPMX20_02901 at 3047.044 kb on - strand at 3047.088 kb on + strand at 3047.089 kb on + strand at 3047.097 kb on - strand at 3047.097 kb on - strand at 3047.097 kb on - strand at 3047.168 kb on - strand, within MPMX20_02902 at 3047.209 kb on + strand, within MPMX20_02902 at 3047.235 kb on - strand, within MPMX20_02902 at 3047.249 kb on + strand, within MPMX20_02902 at 3047.249 kb on + strand, within MPMX20_02902 at 3047.313 kb on + strand, within MPMX20_02902 at 3047.401 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.530 kb on + strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.538 kb on - strand, within MPMX20_02902 at 3047.563 kb on - strand, within MPMX20_02902 at 3047.563 kb on - strand, within MPMX20_02902 at 3047.624 kb on - strand, within MPMX20_02902 at 3047.655 kb on + strand, within MPMX20_02902 at 3047.663 kb on + strand, within MPMX20_02902 at 3047.681 kb on - strand at 3047.745 kb on + strand at 3047.796 kb on + strand, within MPMX20_02903 at 3047.827 kb on + strand, within MPMX20_02903 at 3047.896 kb on + strand at 3047.899 kb on - strand at 3047.899 kb on - strand at 3047.914 kb on - strand at 3047.940 kb on + strand at 3047.960 kb on + strand, within MPMX20_02904 at 3047.967 kb on - strand, within MPMX20_02904 at 3047.997 kb on - strand, within MPMX20_02904 at 3048.014 kb on - strand, within MPMX20_02904 at 3048.018 kb on + strand, within MPMX20_02904 at 3048.084 kb on + strand, within MPMX20_02904 at 3048.084 kb on + strand, within MPMX20_02904 at 3048.092 kb on - strand, within MPMX20_02904 at 3048.092 kb on - strand, within MPMX20_02904 at 3048.092 kb on - strand, within MPMX20_02904 at 3048.092 kb on - strand, within MPMX20_02904 at 3048.097 kb on - strand, within MPMX20_02904 at 3048.097 kb on - strand, within MPMX20_02904 at 3048.118 kb on + strand, within MPMX20_02904 at 3048.126 kb on - strand, within MPMX20_02904 at 3048.142 kb on - strand, within MPMX20_02904 at 3048.169 kb on - strand, within MPMX20_02904 at 3048.169 kb on - strand, within MPMX20_02904 at 3048.212 kb on - strand, within MPMX20_02904 at 3048.253 kb on - strand, within MPMX20_02904 at 3048.253 kb on - strand, within MPMX20_02904 at 3048.259 kb on - strand, within MPMX20_02904 at 3048.259 kb on - strand, within MPMX20_02904 at 3048.379 kb on - strand at 3048.429 kb on + strand at 3048.464 kb on + strand at 3048.493 kb on + strand at 3048.496 kb on - strand at 3048.501 kb on - strand at 3048.569 kb on + strand at 3048.569 kb on + strand at 3048.569 kb on + strand at 3048.577 kb on - strand at 3048.577 kb on - strand at 3048.577 kb on - strand at 3048.577 kb on - strand at 3048.584 kb on + strand at 3048.594 kb on + strand at 3048.594 kb on + strand at 3048.594 kb on + strand at 3048.594 kb on + strand at 3048.594 kb on + strand at 3048.602 kb on - strand at 3048.602 kb on - strand at 3048.602 kb on - strand at 3048.602 kb on - strand at 3048.625 kb on + strand, within MPMX20_02905 at 3048.643 kb on - strand, within MPMX20_02905 at 3048.659 kb on - strand, within MPMX20_02905 at 3048.659 kb on - strand, within MPMX20_02905 at 3048.672 kb on + strand, within MPMX20_02905 at 3048.740 kb on - strand, within MPMX20_02905 at 3048.740 kb on - strand, within MPMX20_02905 at 3048.837 kb on - strand, within MPMX20_02905 at 3048.839 kb on + strand, within MPMX20_02905 at 3048.902 kb on + strand, within MPMX20_02905 at 3048.902 kb on + strand, within MPMX20_02905
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,046,768 + MPMX20_02901 0.49 -1.3 3,046,776 - MPMX20_02901 0.50 -0.7 3,046,785 + MPMX20_02901 0.52 -0.9 3,046,862 - MPMX20_02901 0.64 -1.4 3,046,881 - MPMX20_02901 0.67 -1.5 3,046,881 - MPMX20_02901 0.67 -0.2 3,046,918 + MPMX20_02901 0.73 +0.3 3,046,938 + MPMX20_02901 0.77 -0.6 3,046,938 + MPMX20_02901 0.77 -1.3 3,046,938 + MPMX20_02901 0.77 -1.2 3,046,946 - MPMX20_02901 0.78 -2.2 3,046,946 - MPMX20_02901 0.78 -0.1 3,046,946 - MPMX20_02901 0.78 -0.4 3,046,946 - MPMX20_02901 0.78 -0.7 3,046,946 - MPMX20_02901 0.78 -0.9 3,046,946 - MPMX20_02901 0.78 -1.0 3,046,946 - MPMX20_02901 0.78 -2.6 3,046,975 + MPMX20_02901 0.83 -0.5 3,046,983 - MPMX20_02901 0.84 -0.8 3,046,987 + MPMX20_02901 0.85 -0.7 3,046,993 - MPMX20_02901 0.86 -0.9 3,046,995 - MPMX20_02901 0.86 -1.8 3,047,044 - -0.5 3,047,088 + -1.7 3,047,089 + -2.5 3,047,097 - -0.4 3,047,097 - -1.4 3,047,097 - +0.9 3,047,168 - MPMX20_02902 0.14 -0.1 3,047,209 + MPMX20_02902 0.20 -3.8 3,047,235 - MPMX20_02902 0.24 -0.8 3,047,249 + MPMX20_02902 0.26 -0.7 3,047,249 + MPMX20_02902 0.26 -0.7 3,047,313 + MPMX20_02902 0.36 -0.8 3,047,401 + MPMX20_02902 0.49 -1.6 3,047,530 + MPMX20_02902 0.68 -0.9 3,047,530 + MPMX20_02902 0.68 -1.0 3,047,530 + MPMX20_02902 0.68 -1.0 3,047,530 + MPMX20_02902 0.68 -2.3 3,047,530 + MPMX20_02902 0.68 -1.2 3,047,530 + MPMX20_02902 0.68 +2.1 3,047,530 + MPMX20_02902 0.68 -0.6 3,047,538 - MPMX20_02902 0.70 -1.5 3,047,538 - MPMX20_02902 0.70 -1.2 3,047,538 - MPMX20_02902 0.70 -0.4 3,047,538 - MPMX20_02902 0.70 -0.7 3,047,563 - MPMX20_02902 0.73 +0.8 3,047,563 - MPMX20_02902 0.73 -1.2 3,047,624 - MPMX20_02902 0.82 -1.1 3,047,655 + MPMX20_02902 0.87 -1.2 3,047,663 + MPMX20_02902 0.88 -0.3 3,047,681 - +0.2 3,047,745 + -1.6 3,047,796 + MPMX20_02903 0.34 -1.0 3,047,827 + MPMX20_02903 0.52 -0.9 3,047,896 + -0.7 3,047,899 - -0.7 3,047,899 - -0.1 3,047,914 - -1.0 3,047,940 + -1.0 3,047,960 + MPMX20_02904 0.11 -0.8 3,047,967 - MPMX20_02904 0.13 -1.5 3,047,997 - MPMX20_02904 0.20 -0.3 3,048,014 - MPMX20_02904 0.23 -0.5 3,048,018 + MPMX20_02904 0.24 -1.1 3,048,084 + MPMX20_02904 0.39 -1.2 3,048,084 + MPMX20_02904 0.39 -1.0 3,048,092 - MPMX20_02904 0.40 -1.2 3,048,092 - MPMX20_02904 0.40 -0.5 3,048,092 - MPMX20_02904 0.40 -0.5 3,048,092 - MPMX20_02904 0.40 -0.7 3,048,097 - MPMX20_02904 0.41 -0.6 3,048,097 - MPMX20_02904 0.41 +0.2 3,048,118 + MPMX20_02904 0.46 -0.4 3,048,126 - MPMX20_02904 0.48 -0.6 3,048,142 - MPMX20_02904 0.51 -0.9 3,048,169 - MPMX20_02904 0.57 -0.4 3,048,169 - MPMX20_02904 0.57 -0.2 3,048,212 - MPMX20_02904 0.67 -0.5 3,048,253 - MPMX20_02904 0.76 -0.8 3,048,253 - MPMX20_02904 0.76 -1.4 3,048,259 - MPMX20_02904 0.77 -0.4 3,048,259 - MPMX20_02904 0.77 -2.7 3,048,379 - -0.9 3,048,429 + -1.6 3,048,464 + -1.3 3,048,493 + -0.0 3,048,496 - -1.0 3,048,501 - -0.3 3,048,569 + -0.8 3,048,569 + -1.9 3,048,569 + -0.7 3,048,577 - +0.7 3,048,577 - +0.2 3,048,577 - +2.0 3,048,577 - +0.5 3,048,584 + -1.8 3,048,594 + -0.5 3,048,594 + -1.0 3,048,594 + -0.8 3,048,594 + -0.6 3,048,594 + -1.8 3,048,602 - -0.3 3,048,602 - +1.9 3,048,602 - -0.6 3,048,602 - -1.1 3,048,625 + MPMX20_02905 0.11 +1.0 3,048,643 - MPMX20_02905 0.13 -0.8 3,048,659 - MPMX20_02905 0.15 -1.8 3,048,659 - MPMX20_02905 0.15 +0.0 3,048,672 + MPMX20_02905 0.17 -1.2 3,048,740 - MPMX20_02905 0.27 -0.3 3,048,740 - MPMX20_02905 0.27 -1.3 3,048,837 - MPMX20_02905 0.41 -0.6 3,048,839 + MPMX20_02905 0.41 -1.2 3,048,902 + MPMX20_02905 0.50 -0.5 3,048,902 + MPMX20_02905 0.50 -1.6
Or see this region's nucleotide sequence