Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02880 and MPMX20_02881 are separated by 104 nucleotides MPMX20_02881 and MPMX20_02882 overlap by 1 nucleotides MPMX20_02882 and MPMX20_02883 are separated by 2 nucleotides MPMX20_02883 and MPMX20_02884 are separated by 11 nucleotides
MPMX20_02880: MPMX20_02880 - hypothetical protein, at 3,033,310 to 3,033,978
_02880
MPMX20_02881: MPMX20_02881 - hypothetical protein, at 3,034,083 to 3,034,253
_02881
MPMX20_02882: MPMX20_02882 - hypothetical protein, at 3,034,253 to 3,034,633
_02882
MPMX20_02883: MPMX20_02883 - hypothetical protein, at 3,034,636 to 3,035,001
_02883
MPMX20_02884: MPMX20_02884 - hypothetical protein, at 3,035,013 to 3,036,098
_02884
Position (kb)
3034
3035
3036 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3033.636 kb on + strand, within MPMX20_02880 at 3033.636 kb on + strand, within MPMX20_02880 at 3033.638 kb on - strand, within MPMX20_02880 at 3033.644 kb on - strand, within MPMX20_02880 at 3033.646 kb on + strand, within MPMX20_02880 at 3033.686 kb on - strand, within MPMX20_02880 at 3033.725 kb on - strand, within MPMX20_02880 at 3033.738 kb on - strand, within MPMX20_02880 at 3033.795 kb on - strand, within MPMX20_02880 at 3033.795 kb on - strand, within MPMX20_02880 at 3033.802 kb on + strand, within MPMX20_02880 at 3033.815 kb on - strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.825 kb on + strand, within MPMX20_02880 at 3033.826 kb on - strand, within MPMX20_02880 at 3033.833 kb on - strand, within MPMX20_02880 at 3033.839 kb on + strand, within MPMX20_02880 at 3033.859 kb on - strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.875 kb on + strand, within MPMX20_02880 at 3033.898 kb on - strand, within MPMX20_02880 at 3033.917 kb on - strand at 3033.952 kb on - strand at 3033.952 kb on - strand at 3033.972 kb on - strand at 3033.974 kb on + strand at 3033.981 kb on - strand at 3033.982 kb on - strand at 3034.003 kb on - strand at 3034.005 kb on + strand at 3034.111 kb on - strand, within MPMX20_02881 at 3034.111 kb on - strand, within MPMX20_02881 at 3034.171 kb on + strand, within MPMX20_02881 at 3034.206 kb on - strand, within MPMX20_02881 at 3034.240 kb on + strand at 3034.267 kb on - strand at 3034.268 kb on - strand at 3034.287 kb on + strand at 3034.287 kb on - strand at 3034.295 kb on - strand, within MPMX20_02882 at 3034.350 kb on - strand, within MPMX20_02882 at 3034.367 kb on + strand, within MPMX20_02882 at 3034.378 kb on - strand, within MPMX20_02882 at 3034.452 kb on - strand, within MPMX20_02882 at 3034.488 kb on - strand, within MPMX20_02882 at 3034.496 kb on - strand, within MPMX20_02882 at 3034.503 kb on - strand, within MPMX20_02882 at 3034.503 kb on - strand, within MPMX20_02882 at 3034.504 kb on - strand, within MPMX20_02882 at 3034.570 kb on + strand, within MPMX20_02882 at 3034.570 kb on + strand, within MPMX20_02882 at 3034.580 kb on + strand, within MPMX20_02882 at 3034.588 kb on - strand, within MPMX20_02882 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.678 kb on - strand, within MPMX20_02883 at 3034.683 kb on - strand, within MPMX20_02883 at 3034.721 kb on + strand, within MPMX20_02883 at 3034.723 kb on - strand, within MPMX20_02883 at 3034.728 kb on - strand, within MPMX20_02883 at 3034.760 kb on - strand, within MPMX20_02883 at 3034.764 kb on + strand, within MPMX20_02883 at 3034.803 kb on + strand, within MPMX20_02883 at 3034.823 kb on + strand, within MPMX20_02883 at 3034.823 kb on + strand, within MPMX20_02883 at 3034.880 kb on - strand, within MPMX20_02883 at 3034.899 kb on + strand, within MPMX20_02883 at 3034.961 kb on - strand, within MPMX20_02883 at 3034.963 kb on + strand, within MPMX20_02883 at 3034.972 kb on - strand at 3034.977 kb on - strand at 3035.009 kb on + strand at 3035.036 kb on - strand at 3035.036 kb on - strand at 3035.047 kb on - strand at 3035.078 kb on + strand at 3035.086 kb on - strand at 3035.120 kb on - strand at 3035.203 kb on + strand, within MPMX20_02884 at 3035.236 kb on + strand, within MPMX20_02884 at 3035.264 kb on + strand, within MPMX20_02884 at 3035.277 kb on - strand, within MPMX20_02884 at 3035.279 kb on + strand, within MPMX20_02884 at 3035.335 kb on - strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.337 kb on + strand, within MPMX20_02884 at 3035.340 kb on - strand, within MPMX20_02884 at 3035.345 kb on - strand, within MPMX20_02884 at 3035.366 kb on + strand, within MPMX20_02884 at 3035.374 kb on + strand, within MPMX20_02884 at 3035.374 kb on + strand, within MPMX20_02884 at 3035.382 kb on - strand, within MPMX20_02884 at 3035.416 kb on + strand, within MPMX20_02884 at 3035.424 kb on - strand, within MPMX20_02884 at 3035.447 kb on + strand, within MPMX20_02884 at 3035.447 kb on + strand, within MPMX20_02884 at 3035.490 kb on + strand, within MPMX20_02884 at 3035.493 kb on - strand, within MPMX20_02884 at 3035.535 kb on - strand, within MPMX20_02884 at 3035.551 kb on + strand, within MPMX20_02884 at 3035.585 kb on + strand, within MPMX20_02884 at 3035.599 kb on - strand, within MPMX20_02884 at 3035.630 kb on - strand, within MPMX20_02884 at 3035.635 kb on - strand, within MPMX20_02884 at 3035.687 kb on - strand, within MPMX20_02884 at 3035.702 kb on + strand, within MPMX20_02884 at 3035.734 kb on + strand, within MPMX20_02884 at 3035.793 kb on + strand, within MPMX20_02884 at 3035.852 kb on + strand, within MPMX20_02884 at 3035.879 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.989 kb on + strand, within MPMX20_02884 at 3035.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,033,636 + MPMX20_02880 0.49 -0.2 3,033,636 + MPMX20_02880 0.49 +0.6 3,033,638 - MPMX20_02880 0.49 -0.7 3,033,644 - MPMX20_02880 0.50 -0.6 3,033,646 + MPMX20_02880 0.50 -1.1 3,033,686 - MPMX20_02880 0.56 -2.0 3,033,725 - MPMX20_02880 0.62 -2.8 3,033,738 - MPMX20_02880 0.64 -0.4 3,033,795 - MPMX20_02880 0.72 -1.6 3,033,795 - MPMX20_02880 0.72 -1.9 3,033,802 + MPMX20_02880 0.74 -0.2 3,033,815 - MPMX20_02880 0.75 -1.1 3,033,825 + MPMX20_02880 0.77 -2.4 3,033,825 + MPMX20_02880 0.77 -0.8 3,033,825 + MPMX20_02880 0.77 -0.3 3,033,825 + MPMX20_02880 0.77 -2.1 3,033,826 - MPMX20_02880 0.77 -1.4 3,033,833 - MPMX20_02880 0.78 -1.3 3,033,839 + MPMX20_02880 0.79 +0.6 3,033,859 - MPMX20_02880 0.82 -0.4 3,033,875 + MPMX20_02880 0.84 -1.0 3,033,875 + MPMX20_02880 0.84 -0.7 3,033,875 + MPMX20_02880 0.84 -0.2 3,033,898 - MPMX20_02880 0.88 -1.7 3,033,917 - +0.8 3,033,952 - -2.5 3,033,952 - -0.9 3,033,972 - -1.1 3,033,974 + -0.3 3,033,981 - -0.2 3,033,982 - -2.4 3,034,003 - -1.3 3,034,005 + -0.7 3,034,111 - MPMX20_02881 0.16 -1.6 3,034,111 - MPMX20_02881 0.16 -0.6 3,034,171 + MPMX20_02881 0.51 +0.1 3,034,206 - MPMX20_02881 0.72 -0.6 3,034,240 + -0.6 3,034,267 - -1.2 3,034,268 - -0.6 3,034,287 + -1.1 3,034,287 - -1.0 3,034,295 - MPMX20_02882 0.11 -1.4 3,034,350 - MPMX20_02882 0.25 -1.4 3,034,367 + MPMX20_02882 0.30 -2.1 3,034,378 - MPMX20_02882 0.33 -2.5 3,034,452 - MPMX20_02882 0.52 -1.1 3,034,488 - MPMX20_02882 0.62 -1.6 3,034,496 - MPMX20_02882 0.64 -0.7 3,034,503 - MPMX20_02882 0.66 -0.8 3,034,503 - MPMX20_02882 0.66 -1.2 3,034,504 - MPMX20_02882 0.66 -1.5 3,034,570 + MPMX20_02882 0.83 -0.8 3,034,570 + MPMX20_02882 0.83 -1.8 3,034,580 + MPMX20_02882 0.86 -1.3 3,034,588 - MPMX20_02882 0.88 -1.5 3,034,678 - MPMX20_02883 0.11 -2.5 3,034,678 - MPMX20_02883 0.11 -0.2 3,034,678 - MPMX20_02883 0.11 -0.8 3,034,683 - MPMX20_02883 0.13 -0.7 3,034,721 + MPMX20_02883 0.23 -0.7 3,034,723 - MPMX20_02883 0.24 -0.7 3,034,728 - MPMX20_02883 0.25 -0.7 3,034,760 - MPMX20_02883 0.34 -1.3 3,034,764 + MPMX20_02883 0.35 -1.3 3,034,803 + MPMX20_02883 0.46 -2.0 3,034,823 + MPMX20_02883 0.51 -1.5 3,034,823 + MPMX20_02883 0.51 -3.8 3,034,880 - MPMX20_02883 0.67 -1.5 3,034,899 + MPMX20_02883 0.72 -1.1 3,034,961 - MPMX20_02883 0.89 -0.5 3,034,963 + MPMX20_02883 0.89 -2.0 3,034,972 - -1.7 3,034,977 - -0.6 3,035,009 + -0.7 3,035,036 - -0.8 3,035,036 - -0.4 3,035,047 - -2.2 3,035,078 + -0.8 3,035,086 - -1.4 3,035,120 - -0.6 3,035,203 + MPMX20_02884 0.17 -0.7 3,035,236 + MPMX20_02884 0.21 -1.8 3,035,264 + MPMX20_02884 0.23 -1.2 3,035,277 - MPMX20_02884 0.24 -0.4 3,035,279 + MPMX20_02884 0.24 -1.2 3,035,335 - MPMX20_02884 0.30 -0.7 3,035,337 + MPMX20_02884 0.30 -0.4 3,035,337 + MPMX20_02884 0.30 -0.6 3,035,337 + MPMX20_02884 0.30 -1.1 3,035,340 - MPMX20_02884 0.30 -0.5 3,035,345 - MPMX20_02884 0.31 -1.7 3,035,366 + MPMX20_02884 0.33 -1.3 3,035,374 + MPMX20_02884 0.33 -2.8 3,035,374 + MPMX20_02884 0.33 -1.3 3,035,382 - MPMX20_02884 0.34 -1.4 3,035,416 + MPMX20_02884 0.37 -0.9 3,035,424 - MPMX20_02884 0.38 -0.8 3,035,447 + MPMX20_02884 0.40 -0.6 3,035,447 + MPMX20_02884 0.40 -1.4 3,035,490 + MPMX20_02884 0.44 -1.3 3,035,493 - MPMX20_02884 0.44 -2.6 3,035,535 - MPMX20_02884 0.48 -1.5 3,035,551 + MPMX20_02884 0.50 -0.5 3,035,585 + MPMX20_02884 0.53 -3.1 3,035,599 - MPMX20_02884 0.54 -3.2 3,035,630 - MPMX20_02884 0.57 -3.0 3,035,635 - MPMX20_02884 0.57 -0.9 3,035,687 - MPMX20_02884 0.62 -1.2 3,035,702 + MPMX20_02884 0.63 -1.4 3,035,734 + MPMX20_02884 0.66 -0.3 3,035,793 + MPMX20_02884 0.72 -2.2 3,035,852 + MPMX20_02884 0.77 -1.0 3,035,879 + MPMX20_02884 0.80 -0.0 3,035,989 + MPMX20_02884 0.90 -1.0 3,035,989 + MPMX20_02884 0.90 -1.8 3,035,997 - -1.5
Or see this region's nucleotide sequence