Experiment: Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02874 and MPMX20_02875 are separated by 12 nucleotides MPMX20_02875 and MPMX20_02876 are separated by 57 nucleotides MPMX20_02876 and MPMX20_02877 are separated by 62 nucleotides
MPMX20_02874: MPMX20_02874 - hypothetical protein, at 3,027,635 to 3,030,565
_02874
MPMX20_02875: MPMX20_02875 - hypothetical protein, at 3,030,578 to 3,031,249
_02875
MPMX20_02876: MPMX20_02876 - hypothetical protein, at 3,031,307 to 3,032,050
_02876
MPMX20_02877: MPMX20_02877 - hypothetical protein, at 3,032,113 to 3,032,496
_02877
Position (kb)
3030
3031
3032 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3029.631 kb on - strand, within MPMX20_02874 at 3029.650 kb on - strand, within MPMX20_02874 at 3029.681 kb on + strand, within MPMX20_02874 at 3029.681 kb on + strand, within MPMX20_02874 at 3029.681 kb on - strand, within MPMX20_02874 at 3029.689 kb on - strand, within MPMX20_02874 at 3029.726 kb on + strand, within MPMX20_02874 at 3029.905 kb on + strand, within MPMX20_02874 at 3029.913 kb on - strand, within MPMX20_02874 at 3029.913 kb on - strand, within MPMX20_02874 at 3029.938 kb on + strand, within MPMX20_02874 at 3029.982 kb on + strand, within MPMX20_02874 at 3029.990 kb on - strand, within MPMX20_02874 at 3029.990 kb on - strand, within MPMX20_02874 at 3029.990 kb on - strand, within MPMX20_02874 at 3029.990 kb on - strand, within MPMX20_02874 at 3030.002 kb on + strand, within MPMX20_02874 at 3030.002 kb on + strand, within MPMX20_02874 at 3030.145 kb on + strand, within MPMX20_02874 at 3030.150 kb on + strand, within MPMX20_02874 at 3030.298 kb on + strand at 3030.301 kb on - strand at 3030.306 kb on - strand at 3030.306 kb on - strand at 3030.337 kb on - strand at 3030.354 kb on + strand at 3030.415 kb on + strand at 3030.415 kb on + strand at 3030.415 kb on + strand at 3030.423 kb on - strand at 3030.443 kb on + strand at 3030.462 kb on + strand at 3030.597 kb on - strand at 3030.597 kb on - strand at 3030.597 kb on - strand at 3030.623 kb on + strand at 3030.670 kb on - strand, within MPMX20_02875 at 3030.772 kb on - strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.777 kb on + strand, within MPMX20_02875 at 3030.778 kb on - strand, within MPMX20_02875 at 3030.784 kb on + strand, within MPMX20_02875 at 3030.785 kb on - strand, within MPMX20_02875 at 3030.785 kb on - strand, within MPMX20_02875 at 3030.785 kb on - strand, within MPMX20_02875 at 3030.789 kb on + strand, within MPMX20_02875 at 3030.828 kb on + strand, within MPMX20_02875 at 3030.836 kb on - strand, within MPMX20_02875 at 3030.836 kb on - strand, within MPMX20_02875 at 3030.863 kb on - strand, within MPMX20_02875 at 3030.864 kb on - strand, within MPMX20_02875 at 3030.933 kb on - strand, within MPMX20_02875 at 3030.933 kb on - strand, within MPMX20_02875 at 3031.033 kb on - strand, within MPMX20_02875 at 3031.044 kb on - strand, within MPMX20_02875 at 3031.078 kb on + strand, within MPMX20_02875 at 3031.080 kb on + strand, within MPMX20_02875 at 3031.080 kb on + strand, within MPMX20_02875 at 3031.080 kb on + strand, within MPMX20_02875 at 3031.080 kb on + strand, within MPMX20_02875 at 3031.080 kb on + strand, within MPMX20_02875 at 3031.085 kb on - strand, within MPMX20_02875 at 3031.088 kb on - strand, within MPMX20_02875 at 3031.088 kb on - strand, within MPMX20_02875 at 3031.124 kb on - strand, within MPMX20_02875 at 3031.124 kb on - strand, within MPMX20_02875 at 3031.169 kb on - strand, within MPMX20_02875 at 3031.181 kb on - strand, within MPMX20_02875 at 3031.214 kb on + strand at 3031.214 kb on + strand at 3031.214 kb on + strand at 3031.253 kb on - strand at 3031.253 kb on - strand at 3031.253 kb on - strand at 3031.278 kb on + strand at 3031.281 kb on - strand at 3031.281 kb on - strand at 3031.315 kb on + strand at 3031.322 kb on + strand at 3031.323 kb on - strand at 3031.323 kb on - strand at 3031.323 kb on - strand at 3031.438 kb on + strand, within MPMX20_02876 at 3031.570 kb on - strand, within MPMX20_02876 at 3031.608 kb on + strand, within MPMX20_02876 at 3031.616 kb on - strand, within MPMX20_02876 at 3031.620 kb on + strand, within MPMX20_02876 at 3031.728 kb on + strand, within MPMX20_02876 at 3031.740 kb on + strand, within MPMX20_02876 at 3031.740 kb on + strand, within MPMX20_02876 at 3031.742 kb on + strand, within MPMX20_02876 at 3031.748 kb on - strand, within MPMX20_02876 at 3031.899 kb on - strand, within MPMX20_02876 at 3031.906 kb on + strand, within MPMX20_02876 at 3031.940 kb on - strand, within MPMX20_02876 at 3031.956 kb on + strand, within MPMX20_02876 at 3031.956 kb on + strand, within MPMX20_02876 at 3032.026 kb on + strand at 3032.197 kb on + strand, within MPMX20_02877 at 3032.197 kb on - strand, within MPMX20_02877 at 3032.206 kb on - strand, within MPMX20_02877 at 3032.233 kb on - strand, within MPMX20_02877 at 3032.239 kb on - strand, within MPMX20_02877 at 3032.244 kb on - strand, within MPMX20_02877
Per-strain Table
Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5 remove 3,029,631 - MPMX20_02874 0.68 -0.5 3,029,650 - MPMX20_02874 0.69 +0.2 3,029,681 + MPMX20_02874 0.70 +0.2 3,029,681 + MPMX20_02874 0.70 -0.5 3,029,681 - MPMX20_02874 0.70 -1.1 3,029,689 - MPMX20_02874 0.70 -1.2 3,029,726 + MPMX20_02874 0.71 -1.1 3,029,905 + MPMX20_02874 0.77 +2.0 3,029,913 - MPMX20_02874 0.78 -1.9 3,029,913 - MPMX20_02874 0.78 -0.1 3,029,938 + MPMX20_02874 0.79 -1.2 3,029,982 + MPMX20_02874 0.80 +1.0 3,029,990 - MPMX20_02874 0.80 -1.0 3,029,990 - MPMX20_02874 0.80 -1.1 3,029,990 - MPMX20_02874 0.80 -1.1 3,029,990 - MPMX20_02874 0.80 -0.9 3,030,002 + MPMX20_02874 0.81 -1.4 3,030,002 + MPMX20_02874 0.81 -0.8 3,030,145 + MPMX20_02874 0.86 -1.0 3,030,150 + MPMX20_02874 0.86 -1.5 3,030,298 + -1.3 3,030,301 - -1.0 3,030,306 - -1.2 3,030,306 - -1.4 3,030,337 - -0.7 3,030,354 + -1.0 3,030,415 + -2.0 3,030,415 + -0.2 3,030,415 + -0.8 3,030,423 - -1.2 3,030,443 + +0.2 3,030,462 + -1.6 3,030,597 - -1.5 3,030,597 - -0.9 3,030,597 - -2.0 3,030,623 + -1.0 3,030,670 - MPMX20_02875 0.14 -1.6 3,030,772 - MPMX20_02875 0.29 -0.6 3,030,777 + MPMX20_02875 0.30 -1.1 3,030,777 + MPMX20_02875 0.30 -1.3 3,030,777 + MPMX20_02875 0.30 -1.1 3,030,777 + MPMX20_02875 0.30 -0.3 3,030,777 + MPMX20_02875 0.30 -2.6 3,030,777 + MPMX20_02875 0.30 -1.0 3,030,777 + MPMX20_02875 0.30 -2.9 3,030,778 - MPMX20_02875 0.30 -2.6 3,030,784 + MPMX20_02875 0.31 -1.5 3,030,785 - MPMX20_02875 0.31 -1.0 3,030,785 - MPMX20_02875 0.31 -0.6 3,030,785 - MPMX20_02875 0.31 -1.8 3,030,789 + MPMX20_02875 0.31 -2.4 3,030,828 + MPMX20_02875 0.37 +0.2 3,030,836 - MPMX20_02875 0.38 -2.2 3,030,836 - MPMX20_02875 0.38 -1.7 3,030,863 - MPMX20_02875 0.42 -1.1 3,030,864 - MPMX20_02875 0.43 -1.4 3,030,933 - MPMX20_02875 0.53 -1.0 3,030,933 - MPMX20_02875 0.53 -0.7 3,031,033 - MPMX20_02875 0.68 -1.2 3,031,044 - MPMX20_02875 0.69 -1.8 3,031,078 + MPMX20_02875 0.74 -0.6 3,031,080 + MPMX20_02875 0.75 -1.7 3,031,080 + MPMX20_02875 0.75 -0.8 3,031,080 + MPMX20_02875 0.75 -1.5 3,031,080 + MPMX20_02875 0.75 +0.2 3,031,080 + MPMX20_02875 0.75 -1.5 3,031,085 - MPMX20_02875 0.75 -0.4 3,031,088 - MPMX20_02875 0.76 -1.2 3,031,088 - MPMX20_02875 0.76 -0.5 3,031,124 - MPMX20_02875 0.81 -0.6 3,031,124 - MPMX20_02875 0.81 -1.1 3,031,169 - MPMX20_02875 0.88 -0.9 3,031,181 - MPMX20_02875 0.90 -0.5 3,031,214 + -0.6 3,031,214 + -1.8 3,031,214 + -2.9 3,031,253 - -0.4 3,031,253 - -1.6 3,031,253 - -1.3 3,031,278 + -1.1 3,031,281 - -0.7 3,031,281 - -0.5 3,031,315 + -1.1 3,031,322 + +0.5 3,031,323 - -1.2 3,031,323 - -1.3 3,031,323 - -1.4 3,031,438 + MPMX20_02876 0.18 -1.1 3,031,570 - MPMX20_02876 0.35 -1.9 3,031,608 + MPMX20_02876 0.40 -0.8 3,031,616 - MPMX20_02876 0.42 -0.9 3,031,620 + MPMX20_02876 0.42 -0.4 3,031,728 + MPMX20_02876 0.57 -2.9 3,031,740 + MPMX20_02876 0.58 -3.1 3,031,740 + MPMX20_02876 0.58 -0.2 3,031,742 + MPMX20_02876 0.58 -3.3 3,031,748 - MPMX20_02876 0.59 -0.2 3,031,899 - MPMX20_02876 0.80 -0.9 3,031,906 + MPMX20_02876 0.81 -1.8 3,031,940 - MPMX20_02876 0.85 -1.9 3,031,956 + MPMX20_02876 0.87 -0.4 3,031,956 + MPMX20_02876 0.87 -1.3 3,032,026 + -0.8 3,032,197 + MPMX20_02877 0.22 -1.3 3,032,197 - MPMX20_02877 0.22 -0.9 3,032,206 - MPMX20_02877 0.24 -1.0 3,032,233 - MPMX20_02877 0.31 +0.0 3,032,239 - MPMX20_02877 0.33 -1.1 3,032,244 - MPMX20_02877 0.34 -0.3
Or see this region's nucleotide sequence